HEADER OXIDOREDUCTASE 11-OCT-17 6EP8 TITLE INHA Y158F MUTANT IN COMPLEX WITH NADH FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENOYL-ACP REDUCTASE,FAS-II ENOYL-ACP REDUCTASE,NADH- COMPND 5 DEPENDENT 2-TRANS-ENOYL-ACP REDUCTASE; COMPND 6 EC: 1.3.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE 6-HIS TAG HAS BEEN CLEAVED BY THE THROMBIN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 ATCC: /; SOURCE 5 ORGAN: /; SOURCE 6 TISSUE: /; SOURCE 7 CELL: /; SOURCE 8 GENE: INHA, RV1484, MTCY277.05; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MYCOLIC ACID BIOSYNTHETIC PROCESS, OXIDOREDUCTASE, THERAPEUTIC KEYWDS 2 TARGET, ISONIAZID, MUTATION, CATALYTIC MECHANISM, ENOYL THIOESTER KEYWDS 3 REDUCTASES, TUBERCULOSIS EXPDTA X-RAY DIFFRACTION AUTHOR T.WAGNER,B.VOEGELI,R.G.ROSENTHAL,G.STOFFEL,S.SHIMA,P.KIEFER, AUTHOR 2 N.CORTINA,T.J.ERB REVDAT 4 17-JAN-24 6EP8 1 LINK REVDAT 3 14-NOV-18 6EP8 1 JRNL REVDAT 2 26-SEP-18 6EP8 1 JRNL REVDAT 1 19-SEP-18 6EP8 0 JRNL AUTH B.VOGELI,R.G.ROSENTHAL,G.M.M.STOFFEL,T.WAGNER,P.KIEFER, JRNL AUTH 2 N.S.CORTINA,S.SHIMA,T.J.ERB JRNL TITL INHA, THE ENOYL-THIOESTER REDUCTASE FROMMYCOBACTERIUM JRNL TITL 2 TUBERCULOSISFORMS A COVALENT ADDUCT DURING CATALYSIS. JRNL REF J. BIOL. CHEM. V. 293 17200 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30217823 JRNL DOI 10.1074/JBC.RA118.005405 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5653 - 4.2311 0.99 2972 174 0.1550 0.1791 REMARK 3 2 4.2311 - 3.3588 1.00 2818 149 0.1329 0.1580 REMARK 3 3 3.3588 - 2.9344 1.00 2780 153 0.1408 0.1563 REMARK 3 4 2.9344 - 2.6661 1.00 2756 132 0.1328 0.1775 REMARK 3 5 2.6661 - 2.4750 1.00 2735 144 0.1380 0.1421 REMARK 3 6 2.4750 - 2.3291 1.00 2738 142 0.1242 0.1810 REMARK 3 7 2.3291 - 2.2125 1.00 2731 133 0.1245 0.1670 REMARK 3 8 2.2125 - 2.1162 1.00 2706 147 0.1391 0.1565 REMARK 3 9 2.1162 - 2.0347 1.00 2699 135 0.1510 0.2106 REMARK 3 10 2.0347 - 1.9645 1.00 2690 142 0.1633 0.1990 REMARK 3 11 1.9645 - 1.9031 1.00 2687 157 0.1861 0.2201 REMARK 3 12 1.9031 - 1.8487 1.00 2682 142 0.2044 0.2641 REMARK 3 13 1.8487 - 1.8000 1.00 2684 134 0.2361 0.3111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2220 REMARK 3 ANGLE : 1.129 3026 REMARK 3 CHIRALITY : 0.061 337 REMARK 3 PLANARITY : 0.007 391 REMARK 3 DIHEDRAL : 13.166 1335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3725 -40.8402 16.6173 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.5943 REMARK 3 T33: 0.3264 T12: -0.0081 REMARK 3 T13: -0.0203 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 1.4729 L22: 1.9788 REMARK 3 L33: 1.0971 L12: -0.0106 REMARK 3 L13: 0.0602 L23: 0.9519 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: 0.1085 S13: -0.0802 REMARK 3 S21: -0.1473 S22: -0.2196 S23: 0.3708 REMARK 3 S31: -0.1211 S32: -0.7714 S33: 0.0237 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2972 -32.5083 24.8810 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.6122 REMARK 3 T33: 0.3469 T12: 0.0886 REMARK 3 T13: -0.0053 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 1.3808 L22: 1.5405 REMARK 3 L33: 1.2094 L12: 0.2695 REMARK 3 L13: -0.0612 L23: -0.3043 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.1523 S13: 0.1865 REMARK 3 S21: 0.1365 S22: -0.0328 S23: 0.3749 REMARK 3 S31: -0.2292 S32: -0.7976 S33: 0.0576 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1220 -20.8997 8.5998 REMARK 3 T TENSOR REMARK 3 T11: 0.6256 T22: 0.3960 REMARK 3 T33: 0.3442 T12: 0.0246 REMARK 3 T13: -0.0478 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 6.8598 L22: 2.5502 REMARK 3 L33: 1.3444 L12: 0.8459 REMARK 3 L13: -0.2848 L23: -1.1161 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 1.1599 S13: 0.0331 REMARK 3 S21: -1.1628 S22: 0.2205 S23: 0.7736 REMARK 3 S31: 0.0580 S32: -0.8199 S33: -0.0013 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0670 -33.1402 23.9338 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.2402 REMARK 3 T33: 0.2205 T12: 0.0208 REMARK 3 T13: -0.0139 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.6612 L22: 1.3461 REMARK 3 L33: 1.6952 L12: 0.4317 REMARK 3 L13: -0.2273 L23: -0.1550 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.0350 S13: 0.0381 REMARK 3 S21: 0.0325 S22: -0.0141 S23: 0.1334 REMARK 3 S31: -0.1711 S32: -0.2941 S33: 0.0014 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8629 -37.1379 11.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: 0.3622 REMARK 3 T33: 0.3235 T12: -0.0159 REMARK 3 T13: -0.0291 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.0639 L22: 0.9311 REMARK 3 L33: 2.0102 L12: 0.0101 REMARK 3 L13: 0.4761 L23: 0.5726 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.2360 S13: 0.1968 REMARK 3 S21: -0.2346 S22: 0.0732 S23: 0.1046 REMARK 3 S31: -0.2335 S32: -0.2606 S33: 0.1042 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9298 -41.5920 2.9461 REMARK 3 T TENSOR REMARK 3 T11: 0.2902 T22: 0.4226 REMARK 3 T33: 0.2917 T12: -0.0762 REMARK 3 T13: -0.0433 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.7380 L22: 2.7820 REMARK 3 L33: 2.6216 L12: -0.1704 REMARK 3 L13: 0.4608 L23: -0.8550 REMARK 3 S TENSOR REMARK 3 S11: -0.2388 S12: 0.2847 S13: 0.1379 REMARK 3 S21: -0.3459 S22: 0.0505 S23: -0.1565 REMARK 3 S31: -0.1275 S32: 0.0509 S33: 0.0803 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0385 -48.5237 19.7959 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.2443 REMARK 3 T33: 0.2463 T12: -0.0582 REMARK 3 T13: -0.0072 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.1487 L22: 1.2658 REMARK 3 L33: 2.1914 L12: 0.0113 REMARK 3 L13: 0.4551 L23: 0.1135 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.0820 S13: -0.0019 REMARK 3 S21: -0.0242 S22: -0.0200 S23: 0.0471 REMARK 3 S31: 0.1021 S32: -0.2398 S33: 0.0140 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07244 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37644 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.80 REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4TRO REMARK 200 REMARK 200 REMARK: BI-PYRAMIDAL SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THROMBIN CLEAVED INHA AT 10 MG/ML WITH REMARK 280 3 TO 10 MM OF NADH WAS CRYSTALLIZED IN A 24-WELL CRYSTAL PLATE, REMARK 280 COMBICLOVER JUNIOR (JENA BIOSCIENCE). THE BEST CRYSTALS APPEARED REMARK 280 IN DROPS OF 2 UL OF ENZYME SOLUTION, 1 UL OF THE RESERVOIR REMARK 280 SOLUTION AND 1 UL OF DISTILLED WATER. THE RESERVOIR SOLUTION REMARK 280 CONTAINED 100 MM HEPES/NAOH PH 7.5, 50 MM SODIUM CITRATE PH 6.5, REMARK 280 7-9 % 2-METHYL-2,4-PENTANEDIOL. CRYSTALS APPEARED TYPICALLY REMARK 280 WITHIN TWO TO THREE WEEKS IN THIS CONDITION., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.22400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.61200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.22400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.61200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.22400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 46.61200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.22400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.61200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -327.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 49.13650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -85.10691 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 46.61200 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 49.13650 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -85.10691 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 46.61200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 16 -32.69 -131.90 REMARK 500 ASP A 42 -61.61 76.18 REMARK 500 ALA A 124 -58.50 -128.32 REMARK 500 ALA A 157 -45.96 81.77 REMARK 500 ASN A 159 -111.33 33.08 REMARK 500 ALA A 260 74.33 -108.19 REMARK 500 LEU A 268 71.57 -114.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 664 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 19 O REMARK 620 2 HOH A 529 O 123.3 REMARK 620 3 HOH A 545 O 147.4 84.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 68 OE1 REMARK 620 2 GLU A 68 OE2 48.7 REMARK 620 3 HOH A 461 O 89.7 58.9 REMARK 620 4 HOH A 548 O 101.5 68.2 94.0 REMARK 620 5 HOH A 601 O 98.2 144.7 118.7 141.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 O REMARK 620 2 GLN A 224 O 78.3 REMARK 620 3 ALA A 226 O 90.8 103.9 REMARK 620 4 HOH A 595 O 99.9 167.5 88.5 REMARK 620 5 HOH A 598 O 157.0 80.2 86.5 102.9 REMARK 620 6 HOH A 605 O 91.6 83.0 173.1 84.7 93.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 312 DBREF 6EP8 A 1 269 UNP P9WGR1 INHA_MYCTU 1 269 SEQADV 6EP8 GLY A -2 UNP P9WGR1 EXPRESSION TAG SEQADV 6EP8 SER A -1 UNP P9WGR1 EXPRESSION TAG SEQADV 6EP8 HIS A 0 UNP P9WGR1 EXPRESSION TAG SEQADV 6EP8 PHE A 158 UNP P9WGR1 TYR 158 ENGINEERED MUTATION SEQRES 1 A 272 GLY SER HIS MET THR GLY LEU LEU ASP GLY LYS ARG ILE SEQRES 2 A 272 LEU VAL SER GLY ILE ILE THR ASP SER SER ILE ALA PHE SEQRES 3 A 272 HIS ILE ALA ARG VAL ALA GLN GLU GLN GLY ALA GLN LEU SEQRES 4 A 272 VAL LEU THR GLY PHE ASP ARG LEU ARG LEU ILE GLN ARG SEQRES 5 A 272 ILE THR ASP ARG LEU PRO ALA LYS ALA PRO LEU LEU GLU SEQRES 6 A 272 LEU ASP VAL GLN ASN GLU GLU HIS LEU ALA SER LEU ALA SEQRES 7 A 272 GLY ARG VAL THR GLU ALA ILE GLY ALA GLY ASN LYS LEU SEQRES 8 A 272 ASP GLY VAL VAL HIS SER ILE GLY PHE MET PRO GLN THR SEQRES 9 A 272 GLY MET GLY ILE ASN PRO PHE PHE ASP ALA PRO TYR ALA SEQRES 10 A 272 ASP VAL SER LYS GLY ILE HIS ILE SER ALA TYR SER TYR SEQRES 11 A 272 ALA SER MET ALA LYS ALA LEU LEU PRO ILE MET ASN PRO SEQRES 12 A 272 GLY GLY SER ILE VAL GLY MET ASP PHE ASP PRO SER ARG SEQRES 13 A 272 ALA MET PRO ALA PHE ASN TRP MET THR VAL ALA LYS SER SEQRES 14 A 272 ALA LEU GLU SER VAL ASN ARG PHE VAL ALA ARG GLU ALA SEQRES 15 A 272 GLY LYS TYR GLY VAL ARG SER ASN LEU VAL ALA ALA GLY SEQRES 16 A 272 PRO ILE ARG THR LEU ALA MET SER ALA ILE VAL GLY GLY SEQRES 17 A 272 ALA LEU GLY GLU GLU ALA GLY ALA GLN ILE GLN LEU LEU SEQRES 18 A 272 GLU GLU GLY TRP ASP GLN ARG ALA PRO ILE GLY TRP ASN SEQRES 19 A 272 MET LYS ASP ALA THR PRO VAL ALA LYS THR VAL CYS ALA SEQRES 20 A 272 LEU LEU SER ASP TRP LEU PRO ALA THR THR GLY ASP ILE SEQRES 21 A 272 ILE TYR ALA ASP GLY GLY ALA HIS THR GLN LEU LEU HET NA A 301 1 HET NAD A 302 44 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET GOL A 306 6 HET GOL A 307 6 HET GOL A 308 6 HET GOL A 309 6 HET GOL A 310 6 HET GOL A 311 6 HET MPD A 312 8 HETNAM NA SODIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 4(NA 1+) FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 7 GOL 6(C3 H8 O3) FORMUL 13 MPD C6 H14 O2 FORMUL 14 HOH *264(H2 O) HELIX 1 AA1 SER A 20 GLN A 32 1 13 HELIX 2 AA2 ARG A 43 ASP A 52 1 10 HELIX 3 AA3 ASN A 67 GLY A 83 1 17 HELIX 4 AA4 PRO A 99 MET A 103 5 5 HELIX 5 AA5 PRO A 107 ALA A 111 5 5 HELIX 6 AA6 PRO A 112 ALA A 124 1 13 HELIX 7 AA7 ALA A 124 LEU A 135 1 12 HELIX 8 AA8 PHE A 158 LYS A 181 1 24 HELIX 9 AA9 THR A 196 GLY A 204 1 9 HELIX 10 AB1 GLY A 208 ALA A 226 1 19 HELIX 11 AB2 ALA A 235 SER A 247 1 13 HELIX 12 AB3 GLY A 263 GLN A 267 5 5 SHEET 1 AA1 7 LEU A 60 GLU A 62 0 SHEET 2 AA1 7 GLN A 35 GLY A 40 1 N LEU A 38 O LEU A 61 SHEET 3 AA1 7 ARG A 9 SER A 13 1 N VAL A 12 O VAL A 37 SHEET 4 AA1 7 LEU A 88 HIS A 93 1 O ASP A 89 N ARG A 9 SHEET 5 AA1 7 MET A 138 ASP A 148 1 O VAL A 145 N HIS A 93 SHEET 6 AA1 7 ARG A 185 ALA A 191 1 O VAL A 189 N ASP A 148 SHEET 7 AA1 7 ASP A 256 ALA A 260 1 O ILE A 258 N LEU A 188 LINK O SER A 19 NA NA A 303 1555 1555 2.93 LINK OE1 GLU A 68 NA NA A 305 1555 1555 2.88 LINK OE2 GLU A 68 NA NA A 305 1555 1555 2.31 LINK O ASP A 223 NA NA A 301 1555 1555 2.58 LINK O GLN A 224 NA NA A 301 1555 1555 2.84 LINK O ALA A 226 NA NA A 301 1555 1555 2.52 LINK NA NA A 301 O HOH A 595 1555 1555 2.34 LINK NA NA A 301 O HOH A 598 1555 1555 2.39 LINK NA NA A 301 O HOH A 605 1555 1555 2.46 LINK NA NA A 303 O HOH A 529 1555 1555 3.13 LINK NA NA A 303 O HOH A 545 1555 1555 3.15 LINK NA NA A 304 O HOH A 480 1555 1555 2.28 LINK NA NA A 305 O HOH A 461 1555 1555 3.03 LINK NA NA A 305 O HOH A 548 1555 1555 2.82 LINK NA NA A 305 O HOH A 601 1555 1555 2.83 SITE 1 AC1 6 ASP A 223 GLN A 224 ALA A 226 HOH A 595 SITE 2 AC1 6 HOH A 598 HOH A 605 SITE 1 AC2 35 GLY A 14 ILE A 15 ILE A 16 SER A 20 SITE 2 AC2 35 ILE A 21 PHE A 41 LEU A 63 ASP A 64 SITE 3 AC2 35 VAL A 65 SER A 94 ILE A 95 GLY A 96 SITE 4 AC2 35 ILE A 122 MET A 147 ASP A 148 PHE A 149 SITE 5 AC2 35 LYS A 165 ALA A 191 GLY A 192 PRO A 193 SITE 6 AC2 35 ILE A 194 THR A 196 HOH A 418 HOH A 423 SITE 7 AC2 35 HOH A 443 HOH A 504 HOH A 510 HOH A 511 SITE 8 AC2 35 HOH A 514 HOH A 520 HOH A 528 HOH A 551 SITE 9 AC2 35 HOH A 552 HOH A 576 HOH A 578 SITE 1 AC3 2 SER A 19 HIS A 24 SITE 1 AC4 5 GLN A 30 ALA A 34 LEU A 36 LYS A 57 SITE 2 AC4 5 HOH A 480 SITE 1 AC5 5 GLU A 68 LEU A 71 HOH A 461 HOH A 548 SITE 2 AC5 5 HOH A 601 SITE 1 AC6 2 GLN A 30 HOH A 462 SITE 1 AC7 7 THR A 2 LEU A 4 GLN A 32 TRP A 249 SITE 2 AC7 7 HOH A 403 HOH A 485 HOH A 488 SITE 1 AC8 3 LEU A 61 GLU A 62 ARG A 77 SITE 1 AC9 8 GLY A 141 GLY A 183 PRO A 251 HOH A 471 SITE 2 AC9 8 HOH A 479 HOH A 508 HOH A 543 HOH A 549 SITE 1 AD1 6 GLU A 68 PHE A 109 ASP A 110 PRO A 112 SITE 2 AD1 6 TYR A 125 LYS A 132 SITE 1 AD2 5 ASP A 42 ARG A 43 LEU A 44 ARG A 45 SITE 2 AD2 5 LEU A 46 SITE 1 AD3 1 LYS A 181 CRYST1 98.273 98.273 139.836 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010176 0.005875 0.000000 0.00000 SCALE2 0.000000 0.011750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007151 0.00000