HEADER SIGNALING PROTEIN 12-OCT-17 6EPP TITLE RAS GUANINE EXCHANGE FACTOR SOS1 (REM-CDC25) IN COMPLEX WITH TITLE 2 KRAS(G12C) AND FRAGMENT SCREENING HIT F4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: R; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL G IS A CLONING ARTIFACT; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 10 CHAIN: S; COMPND 11 SYNONYM: SOS-1; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 OTHER_DETAILS: MUTATION K563G IS A CLONING ARTIFACT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, GEF, FRAGMENT SCREEN, GTPASE, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.C.HILLIG,D.MOOSMAYER,A.HILPMANN,B.BADER,J.SCHROEDER,L.WORTMANN, AUTHOR 2 B.SAUTIER,J.KAHMANN,D.WEGENER,H.BRIEM,K.PETERSEN,V.BADOCK REVDAT 4 17-JAN-24 6EPP 1 REMARK REVDAT 3 14-AUG-19 6EPP 1 REMARK REVDAT 2 20-FEB-19 6EPP 1 JRNL REVDAT 1 06-FEB-19 6EPP 0 JRNL AUTH R.C.HILLIG,B.SAUTIER,J.SCHROEDER,D.MOOSMAYER,A.HILPMANN, JRNL AUTH 2 C.M.STEGMANN,N.D.WERBECK,H.BRIEM,U.BOEMER,J.WEISKE,V.BADOCK, JRNL AUTH 3 J.MASTOURI,K.PETERSEN,G.SIEMEISTER,J.D.KAHMANN,D.WEGENER, JRNL AUTH 4 N.BOHNKE,K.EIS,K.GRAHAM,L.WORTMANN,F.VON NUSSBAUM,B.BADER JRNL TITL DISCOVERY OF POTENT SOS1 INHIBITORS THAT BLOCK RAS JRNL TITL 2 ACTIVATION VIA DISRUPTION OF THE RAS-SOS1 INTERACTION. JRNL REF PROC. NATL. ACAD. SCI. V. 116 2551 2019 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30683722 JRNL DOI 10.1073/PNAS.1812963116 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3090 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5355 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5022 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7241 ; 1.517 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11663 ; 1.011 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 5.723 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;35.531 ;23.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 989 ;17.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;17.596 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 789 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5843 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1090 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2528 ; 3.435 ; 3.331 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2527 ; 3.431 ; 3.328 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3161 ; 5.576 ; 7.451 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3162 ; 5.576 ; 7.457 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2827 ; 4.502 ; 3.894 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2828 ; 4.501 ; 3.896 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4079 ; 7.216 ; 8.425 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 21984 ;11.066 ;63.255 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 21983 ;11.064 ;63.249 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 1 R 167 REMARK 3 ORIGIN FOR THE GROUP (A): 178.7690 141.1150 262.1990 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.1225 REMARK 3 T33: 0.0124 T12: -0.0422 REMARK 3 T13: 0.0115 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.3259 L22: 3.5503 REMARK 3 L33: 1.8640 L12: 0.2640 REMARK 3 L13: -0.0938 L23: -0.5982 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0509 S13: -0.0059 REMARK 3 S21: -0.0458 S22: -0.0665 S23: -0.1845 REMARK 3 S31: -0.0798 S32: 0.2903 S33: 0.0748 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : S 568 S 743 REMARK 3 ORIGIN FOR THE GROUP (A): 162.6360 118.7880 226.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.2725 REMARK 3 T33: 0.0330 T12: 0.0707 REMARK 3 T13: 0.0015 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 4.0908 L22: 2.4258 REMARK 3 L33: 3.0130 L12: 0.5748 REMARK 3 L13: -1.3531 L23: 0.6587 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: 0.6725 S13: -0.3096 REMARK 3 S21: -0.5228 S22: -0.1043 S23: -0.0082 REMARK 3 S31: -0.1148 S32: -0.3178 S33: 0.2086 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : S 752 S 1044 REMARK 3 ORIGIN FOR THE GROUP (A): 172.3830 115.5220 268.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.1059 REMARK 3 T33: 0.0214 T12: 0.0374 REMARK 3 T13: 0.0143 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.8094 L22: 1.0007 REMARK 3 L33: 2.2566 L12: -0.0627 REMARK 3 L13: 0.2663 L23: -0.4388 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0725 S13: -0.1037 REMARK 3 S21: 0.0062 S22: 0.0123 S23: -0.0512 REMARK 3 S31: 0.2363 S32: 0.0385 S33: 0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44844 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1BKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS MADE FROM KRAS SOS1 COMPLEX REMARK 280 (14.4 MG/ML IN 5 MM TRIS PH 7.5, 100MM NACL) AND RESERVOIR REMARK 280 SOLUTION (2.9 TO 3.4 M SODIUM FORMATE, 100 MM MES PH 6.5). REMARK 280 FRAGMENT SOAKED AT 25 MM FOR THREE DAYS AT 277 K USING A 500 MM REMARK 280 FRAGMENT STOCK SOLUTION IN DMSO. CRYO BUFFER 0.1 M MES PH 6.5, REMARK 280 3.5 M SODIUM FORMATE, 20 GLYCEROL, 25 MM FRAGMENT, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 74.99000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.18500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 74.99000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.18500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 74.99000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.18500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 74.99000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.18500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.99000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.18500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.99000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.18500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 74.99000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.18500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 74.99000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 74.99000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.18500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY R 0 REMARK 465 LYS R 169 REMARK 465 GLY S 563 REMARK 465 GLU S 564 REMARK 465 THR S 656 REMARK 465 GLU S 657 REMARK 465 ALA S 658 REMARK 465 ASP S 659 REMARK 465 ARG S 660 REMARK 465 ILE S 661 REMARK 465 ALA S 662 REMARK 465 ILE S 663 REMARK 465 GLU S 664 REMARK 465 ASN S 665 REMARK 465 GLY S 666 REMARK 465 ASP S 667 REMARK 465 GLN S 668 REMARK 465 PRO S 669 REMARK 465 LEU S 670 REMARK 465 ARG S 744 REMARK 465 ASP S 745 REMARK 465 ASN S 746 REMARK 465 GLY S 747 REMARK 465 PRO S 748 REMARK 465 GLY S 749 REMARK 465 HIS S 750 REMARK 465 ASN S 751 REMARK 465 PRO S 1047 REMARK 465 GLY S 1048 REMARK 465 THR S 1049 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG S 568 O GLU S 654 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR R 32 124.67 -172.76 REMARK 500 ALA R 59 128.57 -39.98 REMARK 500 SER R 118 -96.99 -112.60 REMARK 500 PRO R 121 -179.75 -67.55 REMARK 500 ARG R 149 -10.42 68.79 REMARK 500 GLN S 566 -158.09 -73.14 REMARK 500 ARG S 568 91.79 58.69 REMARK 500 LYS S 595 -33.19 71.93 REMARK 500 ALA S 672 -88.37 79.59 REMARK 500 THR S 753 148.20 54.13 REMARK 500 HIS S 764 -101.58 -113.68 REMARK 500 PRO S 924 154.23 -46.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL R 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BOQ S 1101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EPL RELATED DB: PDB REMARK 900 RELATED ID: 6EPM RELATED DB: PDB REMARK 900 RELATED ID: 6EPN RELATED DB: PDB REMARK 900 RELATED ID: 6EPO RELATED DB: PDB DBREF 6EPP R 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6EPP S 563 1049 UNP Q07889 SOS1_HUMAN 563 1049 SEQADV 6EPP GLY R 0 UNP P01116 EXPRESSION TAG SEQADV 6EPP CYS R 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 6EPP SER R 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 6EPP GLU R 126 UNP P01116 ASP 126 ENGINEERED MUTATION SEQADV 6EPP SER R 127 UNP P01116 THR 127 ENGINEERED MUTATION SEQADV 6EPP ARG R 128 UNP P01116 LYS 128 ENGINEERED MUTATION SEQADV 6EPP GLY S 563 UNP Q07889 LYS 563 CONFLICT SEQRES 1 R 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 R 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 R 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 R 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 R 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 R 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 R 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 R 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 R 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 R 170 LYS SER ASP LEU PRO SER ARG THR VAL GLU SER ARG GLN SEQRES 11 R 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 R 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 R 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 R 170 LYS SEQRES 1 S 487 GLY GLU GLU GLN MET ARG LEU PRO SER ALA ASP VAL TYR SEQRES 2 S 487 ARG PHE ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE SEQRES 3 S 487 GLU GLU ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE SEQRES 4 S 487 LYS ALA GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR SEQRES 5 S 487 TYR HIS MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE SEQRES 6 S 487 LEU THR THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU SEQRES 7 S 487 LEU SER LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO SEQRES 8 S 487 GLU PRO THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY SEQRES 9 S 487 ASP GLN PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS SEQRES 10 S 487 GLU TYR ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL SEQRES 11 S 487 CYS ARG HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU SEQRES 12 S 487 ARG ASP ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE SEQRES 13 S 487 GLY THR VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SEQRES 14 S 487 SER ILE THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG SEQRES 15 S 487 ASP ASN GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER SEQRES 16 S 487 PRO PRO THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS SEQRES 17 S 487 ILE GLU THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU SEQRES 18 S 487 ILE ALA ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR SEQRES 19 S 487 ARG ALA VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP SEQRES 20 S 487 THR LYS GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU SEQRES 21 S 487 LYS MET ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE SEQRES 22 S 487 GLU LYS CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG SEQRES 23 S 487 VAL ALA VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL SEQRES 24 S 487 PHE GLN GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL SEQRES 25 S 487 VAL SER ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP SEQRES 26 S 487 HIS THR PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE SEQRES 27 S 487 LEU GLU GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS SEQRES 28 S 487 LYS TYR LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS SEQRES 29 S 487 VAL PRO PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS SEQRES 30 S 487 THR GLU GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY SEQRES 31 S 487 LYS GLU LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA SEQRES 32 S 487 GLU ILE THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO SEQRES 33 S 487 TYR CYS LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE SEQRES 34 S 487 GLU ASN LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU SEQRES 35 S 487 PHE THR ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU SEQRES 36 S 487 PRO ARG ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS SEQRES 37 S 487 TYR SER TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER SEQRES 38 S 487 ASN PRO ARG PRO GLY THR HET GOL R 201 6 HET BOQ S1101 16 HETNAM GOL GLYCEROL HETNAM BOQ ETHYL 2-(AMINOMETHYL)-5-~{TERT}-BUTYL-FURAN-3- HETNAM 2 BOQ CARBOXYLATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 BOQ C12 H19 N O3 FORMUL 5 HOH *299(H2 O) HELIX 1 AA1 GLY R 15 GLN R 25 1 11 HELIX 2 AA2 ILE R 36 SER R 39 5 4 HELIX 3 AA3 TYR R 64 ALA R 66 5 3 HELIX 4 AA4 MET R 67 THR R 74 1 8 HELIX 5 AA5 ASN R 86 ASP R 92 1 7 HELIX 6 AA6 ASP R 92 LYS R 104 1 13 HELIX 7 AA7 GLU R 126 GLY R 138 1 13 HELIX 8 AA8 GLY R 151 GLU R 168 1 18 HELIX 9 AA9 TYR S 575 GLU S 579 5 5 HELIX 10 AB1 THR S 605 THR S 614 1 10 HELIX 11 AB2 ASP S 620 TYR S 631 1 12 HELIX 12 AB3 ARG S 632 PHE S 634 5 3 HELIX 13 AB4 LYS S 636 GLU S 649 1 14 HELIX 14 AB5 ALA S 672 TYR S 681 1 10 HELIX 15 AB6 TYR S 681 HIS S 700 1 20 HELIX 16 AB7 PHE S 701 ASP S 707 1 7 HELIX 17 AB8 ASP S 707 VAL S 721 1 15 HELIX 18 AB9 GLY S 723 ILE S 742 1 20 HELIX 19 AC1 HIS S 770 PHE S 774 5 5 HELIX 20 AC2 HIS S 780 VAL S 799 1 20 HELIX 21 AC3 GLN S 800 LYS S 811 5 12 HELIX 22 AC4 ASP S 813 SER S 818 1 6 HELIX 23 AC5 SER S 818 GLU S 841 1 24 HELIX 24 AC6 ASN S 844 LEU S 865 1 22 HELIX 25 AC7 ASN S 867 SER S 880 1 14 HELIX 26 AC8 SER S 880 ARG S 885 1 6 HELIX 27 AC9 LEU S 886 ILE S 893 1 8 HELIX 28 AD1 PRO S 894 LEU S 907 1 14 HELIX 29 AD2 SER S 908 ILE S 922 1 15 HELIX 30 AD3 PHE S 930 GLY S 943 1 14 HELIX 31 AD4 PHE S 958 TYR S 974 1 17 HELIX 32 AD5 GLU S 984 ASN S 993 1 10 HELIX 33 AD6 MET S 1001 GLU S 1017 1 17 SHEET 1 AA1 6 ARG R 41 ILE R 46 0 SHEET 2 AA1 6 GLU R 49 ASP R 57 -1 O CYS R 51 N VAL R 44 SHEET 3 AA1 6 GLU R 3 GLY R 10 1 N TYR R 4 O LEU R 52 SHEET 4 AA1 6 GLY R 77 ALA R 83 1 O LEU R 79 N VAL R 9 SHEET 5 AA1 6 MET R 111 LYS R 117 1 O ASN R 116 N PHE R 82 SHEET 6 AA1 6 PHE R 141 SER R 145 1 O THR R 144 N GLY R 115 SHEET 1 AA2 4 ILE S 586 MET S 592 0 SHEET 2 AA2 4 PRO S 599 GLY S 604 -1 O ALA S 603 N ILE S 587 SHEET 3 AA2 4 LYS S 953 ASN S 957 -1 O ILE S 956 N GLY S 604 SHEET 4 AA2 4 VAL S 947 ARG S 950 -1 N ARG S 950 O LYS S 953 CISPEP 1 LEU R 120 PRO R 121 0 9.71 CISPEP 2 PRO S 924 PRO S 925 0 0.56 CISPEP 3 ASN S 1020 PRO S 1021 0 10.34 SITE 1 AC1 3 ARG R 68 HIS R 95 GLN R 99 SITE 1 AC2 5 VAL S 883 TYR S 884 ASP S 887 PHE S 890 SITE 2 AC2 5 HOH S1249 CRYST1 149.980 149.980 200.370 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004991 0.00000