HEADER TRANSFERASE 12-OCT-17 6EQ9 TITLE CRYSTAL STRUCTURE OF JNK3 IN COMPLEX WITH AMP-PCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 10; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAPK 10,MAP KINASE P49 3F12,STRESS-ACTIVATED PROTEIN KINASE COMPND 5 1B,SAPK1B,STRESS-ACTIVATED PROTEIN KINASE JNK3,C-JUN N-TERMINAL COMPND 6 KINASE 3; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK10, JNK3, JNK3A, PRKM10, SAPK1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN KINASE ACTIVIY MAP KINASE ACTIVITY ATP BINDING PROTEIN KEYWDS 2 PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.T.MACEDO,T.STEHLE,B.S.BLAUM REVDAT 3 17-JAN-24 6EQ9 1 LINK REVDAT 2 22-AUG-18 6EQ9 1 JRNL REVDAT 1 08-AUG-18 6EQ9 0 JRNL AUTH F.ANSIDERI,J.T.MACEDO,M.EITEL,A.EL-GOKHA,D.S.ZINAD, JRNL AUTH 2 C.SCARPELLINI,M.KUDOLO,D.SCHOLLMEYER,F.M.BOECKLER,B.S.BLAUM, JRNL AUTH 3 S.A.LAUFER,P.KOCH JRNL TITL STRUCTURAL OPTIMIZATION OF A PYRIDINYLIMIDAZOLE SCAFFOLD: JRNL TITL 2 SHIFTING THE SELECTIVITY FROM P38 ALPHA MITOGEN-ACTIVATED JRNL TITL 3 PROTEIN KINASE TO C-JUN N-TERMINAL KINASE 3. JRNL REF ACS OMEGA V. 3 7809 2018 JRNL REFN ESSN 2470-1343 JRNL PMID 30087925 JRNL DOI 10.1021/ACSOMEGA.8B00668 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 66375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 391 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : 2.23000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.348 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5671 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5199 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7716 ; 1.440 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12070 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 707 ; 6.529 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.176 ;24.280 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 948 ;13.780 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.122 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 862 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6189 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1101 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2753 ; 2.637 ; 3.600 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2752 ; 2.636 ; 3.598 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3440 ; 3.797 ; 5.377 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3441 ; 3.797 ; 5.378 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2918 ; 2.889 ; 3.781 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2918 ; 2.888 ; 3.781 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4262 ; 4.360 ; 5.584 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6566 ; 6.528 ;42.625 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6567 ; 6.528 ;42.629 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 47.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4X21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 5.5, 200 MM NACL, REMARK 280 29% PEG 3350, 1 MM AMP-PCP, 0.4 MM ZWITTERGENT 3-14, 10% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 78.36450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.36450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 MET A 39 REMARK 465 SER A 40 REMARK 465 LYS A 41 REMARK 465 SER A 42 REMARK 465 LYS A 43 REMARK 465 VAL A 44 REMARK 465 ASP A 45 REMARK 465 MET A 220 REMARK 465 THR A 221 REMARK 465 PRO A 222 REMARK 465 TYR A 223 REMARK 465 VAL A 224 REMARK 465 SER A 401 REMARK 465 GLU A 402 REMARK 465 GLY B 36 REMARK 465 GLY B 37 REMARK 465 SER B 38 REMARK 465 MET B 39 REMARK 465 SER B 40 REMARK 465 LYS B 41 REMARK 465 SER B 42 REMARK 465 LYS B 43 REMARK 465 VAL B 44 REMARK 465 ASP B 45 REMARK 465 ASN B 46 REMARK 465 ALA B 211 REMARK 465 ARG B 212 REMARK 465 THR B 213 REMARK 465 ALA B 214 REMARK 465 GLY B 215 REMARK 465 THR B 216 REMARK 465 SER B 217 REMARK 465 PHE B 218 REMARK 465 MET B 219 REMARK 465 MET B 220 REMARK 465 THR B 221 REMARK 465 PRO B 222 REMARK 465 TYR B 223 REMARK 465 VAL B 224 REMARK 465 ILE B 375 REMARK 465 TYR B 376 REMARK 465 ASP B 377 REMARK 465 LYS B 378 REMARK 465 GLN B 379 REMARK 465 LEU B 380 REMARK 465 ASP B 381 REMARK 465 GLU B 382 REMARK 465 SER B 401 REMARK 465 GLU B 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CE NZ REMARK 470 GLN A 100 OE1 NE2 REMARK 470 ARG A 107 CZ NH1 NH2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 GLU A 138 OE1 OE2 REMARK 470 LYS A 198 NZ REMARK 470 ARG A 212 CD NE CZ NH1 NH2 REMARK 470 VAL A 225 CG1 CG2 REMARK 470 LYS A 241 CE NZ REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 274 CE NZ REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 THR A 293 OG1 CG2 REMARK 470 ARG A 295 CD NE CZ NH1 NH2 REMARK 470 LYS A 326 CD CE NZ REMARK 470 TYR A 376 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 GLN A 379 CD OE1 NE2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 ARG A 383 CD NE CZ NH1 NH2 REMARK 470 GLU A 388 CG CD OE1 OE2 REMARK 470 LYS A 391 CE NZ REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 GLN B 47 CG CD OE1 NE2 REMARK 470 VAL B 51 CG1 CG2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 VAL B 53 CG1 CG2 REMARK 470 ASP B 55 CG OD1 OD2 REMARK 470 SER B 56 OG REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 ASN B 66 OD1 ND2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 ILE B 77 CG1 CG2 CD1 REMARK 470 VAL B 85 CG1 CG2 REMARK 470 GLN B 102 CG CD OE1 NE2 REMARK 470 LYS B 106 CD CE NZ REMARK 470 ARG B 107 CZ NH1 NH2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 ASN B 119 CG OD1 ND2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 134 CD CE NZ REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 198 CE NZ REMARK 470 VAL B 225 CG1 CG2 REMARK 470 VAL B 234 CG1 CG2 REMARK 470 LYS B 260 CG CD CE NZ REMARK 470 GLU B 285 CG CD OE1 OE2 REMARK 470 LYS B 288 CD CE NZ REMARK 470 GLU B 323 CG CD OE1 OE2 REMARK 470 ARG B 383 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 384 CG CD OE1 OE2 REMARK 470 GLU B 392 CG CD OE1 OE2 REMARK 470 LYS B 396 CE NZ REMARK 470 ASN B 400 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 160 O HOH A 601 2.15 REMARK 500 NE2 GLN A 331 O HOH A 602 2.17 REMARK 500 O HOH B 695 O HOH B 738 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 68.81 -118.24 REMARK 500 GLN A 140 -42.75 -134.79 REMARK 500 ARG A 188 -15.02 72.96 REMARK 500 GLU A 285 -18.16 -48.64 REMARK 500 LYS A 288 -55.76 -17.40 REMARK 500 PRO A 292 -72.44 -27.40 REMARK 500 ASN B 66 62.06 37.15 REMARK 500 GLN B 75 40.93 -90.81 REMARK 500 ASP B 87 59.32 -98.51 REMARK 500 GLN B 140 -55.32 -126.50 REMARK 500 GLU B 285 -74.19 -46.56 REMARK 500 THR B 308 147.62 89.62 REMARK 500 ALA B 320 37.95 -148.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 O REMARK 620 2 ILE A 123 O 61.4 REMARK 620 3 HOH A 693 O 148.6 99.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 ACP A 505 O2B 174.6 REMARK 620 3 ACP A 505 O3G 92.0 93.1 REMARK 620 4 HOH A 654 O 100.6 74.9 162.9 REMARK 620 5 HOH A 738 O 82.2 99.4 95.4 75.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 281 OG1 REMARK 620 2 PRO A 302 O 94.9 REMARK 620 3 HOH A 717 O 112.3 99.7 REMARK 620 4 HOH A 722 O 126.2 134.1 84.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C15 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 504 DBREF 6EQ9 A 39 402 UNP P53779 MK10_HUMAN 39 402 DBREF 6EQ9 B 39 402 UNP P53779 MK10_HUMAN 39 402 SEQADV 6EQ9 GLY A 36 UNP P53779 EXPRESSION TAG SEQADV 6EQ9 GLY A 37 UNP P53779 EXPRESSION TAG SEQADV 6EQ9 SER A 38 UNP P53779 EXPRESSION TAG SEQADV 6EQ9 GLY B 36 UNP P53779 EXPRESSION TAG SEQADV 6EQ9 GLY B 37 UNP P53779 EXPRESSION TAG SEQADV 6EQ9 SER B 38 UNP P53779 EXPRESSION TAG SEQRES 1 A 367 GLY GLY SER MET SER LYS SER LYS VAL ASP ASN GLN PHE SEQRES 2 A 367 TYR SER VAL GLU VAL GLY ASP SER THR PHE THR VAL LEU SEQRES 3 A 367 LYS ARG TYR GLN ASN LEU LYS PRO ILE GLY SER GLY ALA SEQRES 4 A 367 GLN GLY ILE VAL CYS ALA ALA TYR ASP ALA VAL LEU ASP SEQRES 5 A 367 ARG ASN VAL ALA ILE LYS LYS LEU SER ARG PRO PHE GLN SEQRES 6 A 367 ASN GLN THR HIS ALA LYS ARG ALA TYR ARG GLU LEU VAL SEQRES 7 A 367 LEU MET LYS CYS VAL ASN HIS LYS ASN ILE ILE SER LEU SEQRES 8 A 367 LEU ASN VAL PHE THR PRO GLN LYS THR LEU GLU GLU PHE SEQRES 9 A 367 GLN ASP VAL TYR LEU VAL MET GLU LEU MET ASP ALA ASN SEQRES 10 A 367 LEU CYS GLN VAL ILE GLN MET GLU LEU ASP HIS GLU ARG SEQRES 11 A 367 MET SER TYR LEU LEU TYR GLN MET LEU CYS GLY ILE LYS SEQRES 12 A 367 HIS LEU HIS SER ALA GLY ILE ILE HIS ARG ASP LEU LYS SEQRES 13 A 367 PRO SER ASN ILE VAL VAL LYS SER ASP CYS THR LEU LYS SEQRES 14 A 367 ILE LEU ASP PHE GLY LEU ALA ARG THR ALA GLY THR SER SEQRES 15 A 367 PHE MET MET THR PRO TYR VAL VAL THR ARG TYR TYR ARG SEQRES 16 A 367 ALA PRO GLU VAL ILE LEU GLY MET GLY TYR LYS GLU ASN SEQRES 17 A 367 VAL ASP ILE TRP SER VAL GLY CYS ILE MET GLY GLU MET SEQRES 18 A 367 VAL ARG HIS LYS ILE LEU PHE PRO GLY ARG ASP TYR ILE SEQRES 19 A 367 ASP GLN TRP ASN LYS VAL ILE GLU GLN LEU GLY THR PRO SEQRES 20 A 367 CYS PRO GLU PHE MET LYS LYS LEU GLN PRO THR VAL ARG SEQRES 21 A 367 ASN TYR VAL GLU ASN ARG PRO LYS TYR ALA GLY LEU THR SEQRES 22 A 367 PHE PRO LYS LEU PHE PRO ASP SER LEU PHE PRO ALA ASP SEQRES 23 A 367 SER GLU HIS ASN LYS LEU LYS ALA SER GLN ALA ARG ASP SEQRES 24 A 367 LEU LEU SER LYS MET LEU VAL ILE ASP PRO ALA LYS ARG SEQRES 25 A 367 ILE SER VAL ASP ASP ALA LEU GLN HIS PRO TYR ILE ASN SEQRES 26 A 367 VAL TRP TYR ASP PRO ALA GLU VAL GLU ALA PRO PRO PRO SEQRES 27 A 367 GLN ILE TYR ASP LYS GLN LEU ASP GLU ARG GLU HIS THR SEQRES 28 A 367 ILE GLU GLU TRP LYS GLU LEU ILE TYR LYS GLU VAL MET SEQRES 29 A 367 ASN SER GLU SEQRES 1 B 367 GLY GLY SER MET SER LYS SER LYS VAL ASP ASN GLN PHE SEQRES 2 B 367 TYR SER VAL GLU VAL GLY ASP SER THR PHE THR VAL LEU SEQRES 3 B 367 LYS ARG TYR GLN ASN LEU LYS PRO ILE GLY SER GLY ALA SEQRES 4 B 367 GLN GLY ILE VAL CYS ALA ALA TYR ASP ALA VAL LEU ASP SEQRES 5 B 367 ARG ASN VAL ALA ILE LYS LYS LEU SER ARG PRO PHE GLN SEQRES 6 B 367 ASN GLN THR HIS ALA LYS ARG ALA TYR ARG GLU LEU VAL SEQRES 7 B 367 LEU MET LYS CYS VAL ASN HIS LYS ASN ILE ILE SER LEU SEQRES 8 B 367 LEU ASN VAL PHE THR PRO GLN LYS THR LEU GLU GLU PHE SEQRES 9 B 367 GLN ASP VAL TYR LEU VAL MET GLU LEU MET ASP ALA ASN SEQRES 10 B 367 LEU CYS GLN VAL ILE GLN MET GLU LEU ASP HIS GLU ARG SEQRES 11 B 367 MET SER TYR LEU LEU TYR GLN MET LEU CYS GLY ILE LYS SEQRES 12 B 367 HIS LEU HIS SER ALA GLY ILE ILE HIS ARG ASP LEU LYS SEQRES 13 B 367 PRO SER ASN ILE VAL VAL LYS SER ASP CYS THR LEU LYS SEQRES 14 B 367 ILE LEU ASP PHE GLY LEU ALA ARG THR ALA GLY THR SER SEQRES 15 B 367 PHE MET MET THR PRO TYR VAL VAL THR ARG TYR TYR ARG SEQRES 16 B 367 ALA PRO GLU VAL ILE LEU GLY MET GLY TYR LYS GLU ASN SEQRES 17 B 367 VAL ASP ILE TRP SER VAL GLY CYS ILE MET GLY GLU MET SEQRES 18 B 367 VAL ARG HIS LYS ILE LEU PHE PRO GLY ARG ASP TYR ILE SEQRES 19 B 367 ASP GLN TRP ASN LYS VAL ILE GLU GLN LEU GLY THR PRO SEQRES 20 B 367 CYS PRO GLU PHE MET LYS LYS LEU GLN PRO THR VAL ARG SEQRES 21 B 367 ASN TYR VAL GLU ASN ARG PRO LYS TYR ALA GLY LEU THR SEQRES 22 B 367 PHE PRO LYS LEU PHE PRO ASP SER LEU PHE PRO ALA ASP SEQRES 23 B 367 SER GLU HIS ASN LYS LEU LYS ALA SER GLN ALA ARG ASP SEQRES 24 B 367 LEU LEU SER LYS MET LEU VAL ILE ASP PRO ALA LYS ARG SEQRES 25 B 367 ILE SER VAL ASP ASP ALA LEU GLN HIS PRO TYR ILE ASN SEQRES 26 B 367 VAL TRP TYR ASP PRO ALA GLU VAL GLU ALA PRO PRO PRO SEQRES 27 B 367 GLN ILE TYR ASP LYS GLN LEU ASP GLU ARG GLU HIS THR SEQRES 28 B 367 ILE GLU GLU TRP LYS GLU LEU ILE TYR LYS GLU VAL MET SEQRES 29 B 367 ASN SER GLU HET MG A 501 1 HET NA A 502 1 HET NA A 503 1 HET BME A 504 4 HET ACP A 505 31 HET C15 A 506 22 HET PEG A 507 7 HET CL B 501 1 HET ACP B 502 31 HET PEG B 503 7 HET PEG B 504 7 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM C15 N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 NA 2(NA 1+) FORMUL 6 BME C2 H6 O S FORMUL 7 ACP 2(C11 H18 N5 O12 P3) FORMUL 8 C15 C17 H38 N O3 S 1+ FORMUL 9 PEG 3(C4 H10 O3) FORMUL 10 CL CL 1- FORMUL 14 HOH *391(H2 O) HELIX 1 AA1 ASN A 101 VAL A 118 1 18 HELIX 2 AA2 LEU A 153 ILE A 157 1 5 HELIX 3 AA3 ASP A 162 ALA A 183 1 22 HELIX 4 AA4 LYS A 191 SER A 193 5 3 HELIX 5 AA5 ALA A 211 GLY A 215 5 5 HELIX 6 AA6 ALA A 231 LEU A 236 1 6 HELIX 7 AA7 ASN A 243 HIS A 259 1 17 HELIX 8 AA8 ASP A 267 GLY A 280 1 14 HELIX 9 AA9 CYS A 283 LYS A 288 1 6 HELIX 10 AB1 GLN A 291 ARG A 301 1 11 HELIX 11 AB2 THR A 308 PHE A 313 1 6 HELIX 12 AB3 PRO A 314 PHE A 318 5 5 HELIX 13 AB4 SER A 322 LEU A 340 1 19 HELIX 14 AB5 ASP A 343 ARG A 347 5 5 HELIX 15 AB6 SER A 349 HIS A 356 1 8 HELIX 16 AB7 HIS A 356 VAL A 361 1 6 HELIX 17 AB8 ASP A 364 GLU A 369 1 6 HELIX 18 AB9 THR A 386 ASN A 400 1 15 HELIX 19 AC1 ASN B 101 VAL B 118 1 18 HELIX 20 AC2 LEU B 153 MET B 159 1 7 HELIX 21 AC3 ASP B 162 ALA B 183 1 22 HELIX 22 AC4 LYS B 191 SER B 193 5 3 HELIX 23 AC5 ALA B 231 LEU B 236 1 6 HELIX 24 AC6 ASN B 243 HIS B 259 1 17 HELIX 25 AC7 ASP B 267 GLY B 280 1 14 HELIX 26 AC8 CYS B 283 LYS B 289 1 7 HELIX 27 AC9 GLN B 291 ARG B 301 1 11 HELIX 28 AD1 THR B 308 PHE B 313 1 6 HELIX 29 AD2 PRO B 314 PHE B 318 5 5 HELIX 30 AD3 SER B 322 LEU B 340 1 19 HELIX 31 AD4 SER B 349 GLN B 355 1 7 HELIX 32 AD5 ILE B 359 TYR B 363 5 5 HELIX 33 AD6 ASP B 364 GLU B 369 1 6 HELIX 34 AD7 THR B 386 ASN B 400 1 15 SHEET 1 AA1 2 PHE A 48 VAL A 53 0 SHEET 2 AA1 2 SER A 56 LEU A 61 -1 O PHE A 58 N VAL A 51 SHEET 1 AA2 5 TYR A 64 SER A 72 0 SHEET 2 AA2 5 GLY A 76 ASP A 83 -1 O VAL A 78 N GLY A 71 SHEET 3 AA2 5 ARG A 88 LEU A 95 -1 O ILE A 92 N CYS A 79 SHEET 4 AA2 5 TYR A 143 GLU A 147 -1 O MET A 146 N ALA A 91 SHEET 5 AA2 5 LEU A 126 PHE A 130 -1 N ASN A 128 O VAL A 145 SHEET 1 AA3 3 ALA A 151 ASN A 152 0 SHEET 2 AA3 3 ILE A 195 VAL A 197 -1 O VAL A 197 N ALA A 151 SHEET 3 AA3 3 LEU A 203 ILE A 205 -1 O LYS A 204 N VAL A 196 SHEET 1 AA4 2 PHE B 48 VAL B 53 0 SHEET 2 AA4 2 SER B 56 LEU B 61 -1 O PHE B 58 N VAL B 51 SHEET 1 AA5 5 TYR B 64 GLY B 73 0 SHEET 2 AA5 5 GLY B 76 ASP B 83 -1 O ALA B 80 N LYS B 68 SHEET 3 AA5 5 ARG B 88 SER B 96 -1 O ILE B 92 N CYS B 79 SHEET 4 AA5 5 ASP B 141 GLU B 147 -1 O VAL B 142 N LEU B 95 SHEET 5 AA5 5 LEU B 126 PHE B 130 -1 N ASN B 128 O VAL B 145 SHEET 1 AA6 3 ALA B 151 ASN B 152 0 SHEET 2 AA6 3 ILE B 195 VAL B 197 -1 O VAL B 197 N ALA B 151 SHEET 3 AA6 3 LEU B 203 ILE B 205 -1 O LYS B 204 N VAL B 196 LINK SG CYS A 201 S2 BME A 504 1555 1555 1.99 LINK O HIS A 120 NA NA A 502 1555 1555 3.13 LINK O ILE A 123 NA NA A 502 1555 1555 2.73 LINK OD2 ASP A 207 MG MG A 501 1555 1555 2.19 LINK OG1 THR A 281 NA NA A 503 1555 1555 2.72 LINK O PRO A 302 NA NA A 503 1555 1555 2.66 LINK MG MG A 501 O2B ACP A 505 1555 1555 2.20 LINK MG MG A 501 O3G ACP A 505 1555 1555 2.18 LINK MG MG A 501 O HOH A 654 1555 1555 2.19 LINK MG MG A 501 O HOH A 738 1555 1555 2.17 LINK NA NA A 502 O HOH A 693 1555 1555 2.82 LINK NA NA A 503 O HOH A 717 1555 1555 2.64 LINK NA NA A 503 O HOH A 722 1555 1555 2.94 SITE 1 AC1 5 GLN A 75 ASP A 207 ACP A 505 HOH A 654 SITE 2 AC1 5 HOH A 738 SITE 1 AC2 6 VAL A 118 ASN A 119 HIS A 120 ILE A 123 SITE 2 AC2 6 ILE A 124 HOH A 693 SITE 1 AC3 5 ILE A 276 THR A 281 PRO A 302 HOH A 717 SITE 2 AC3 5 HOH A 722 SITE 1 AC4 1 CYS A 201 SITE 1 AC5 24 ILE A 70 GLY A 71 GLY A 73 ALA A 74 SITE 2 AC5 24 GLN A 75 GLY A 76 ALA A 91 LYS A 93 SITE 3 AC5 24 MET A 146 GLU A 147 MET A 149 ASN A 152 SITE 4 AC5 24 LYS A 191 SER A 193 ASN A 194 LEU A 206 SITE 5 AC5 24 ASP A 207 MG A 501 HOH A 654 HOH A 686 SITE 6 AC5 24 HOH A 716 HOH A 726 HOH A 738 HOH A 742 SITE 1 AC6 12 GLY A 215 THR A 216 ILE A 235 LEU A 236 SITE 2 AC6 12 GLY A 237 GLY A 239 GLN A 291 VAL A 294 SITE 3 AC6 12 HOH A 681 GLU B 160 ASP B 162 ARG B 165 SITE 1 AC7 4 ILE A 269 TYR A 297 ASP B 150 PEG B 503 SITE 1 AC8 5 HOH A 690 GLU B 242 ASN B 243 VAL B 350 SITE 2 AC8 5 HOH B 620 SITE 1 AC9 23 ILE B 70 SER B 72 GLY B 73 ALA B 74 SITE 2 AC9 23 VAL B 78 ALA B 91 LYS B 93 ILE B 124 SITE 3 AC9 23 MET B 146 GLU B 147 MET B 149 ASN B 152 SITE 4 AC9 23 LYS B 191 SER B 193 ASN B 194 LEU B 206 SITE 5 AC9 23 ASP B 207 HOH B 619 HOH B 626 HOH B 631 SITE 6 AC9 23 HOH B 644 HOH B 659 HOH B 666 SITE 1 AD1 1 PEG A 507 SITE 1 AD2 2 ILE B 269 THR B 293 CRYST1 156.729 110.490 43.951 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022753 0.00000