HEADER OXIDOREDUCTASE 17-OCT-17 6ER5 TITLE X-RAY STRUCTURE OF TRYPANOTHIONE REDUCTASE FROM LEISHMANIA INFANTUM IN TITLE 2 COMPLEX WITH 2-(DIETHYLAMINO)ETHYL 4-((3-(4-NITROPHENYL)-3- TITLE 3 OXOPROPYL)AMINO)BENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPANOTHIONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA INFANTUM; SOURCE 3 ORGANISM_TAXID: 5671; SOURCE 4 GENE: TRYR, LINJ_05_0350; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRYPANOTHIONE, TRYPANOTHIONE REDUCTASE, LEISHMANIA INFANTUM KEYWDS 2 TRYPANOTHIONE REDUCTASE INHIBITORS., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ILARI,A.FIORILLO REVDAT 4 17-JAN-24 6ER5 1 REMARK REVDAT 3 23-OCT-19 6ER5 1 COMPND FORMUL REVDAT 2 12-JUN-19 6ER5 1 JRNL REVDAT 1 31-OCT-18 6ER5 0 JRNL AUTH L.TURCANO,E.TORRENTE,A.MISSINEO,M.ANDREINI,M.GRAMICCIA, JRNL AUTH 2 T.DI MUCCIO,I.GENOVESE,A.FIORILLO,S.HARPER,A.BRESCIANI, JRNL AUTH 3 G.COLOTTI,A.ILARI JRNL TITL IDENTIFICATION AND BINDING MODE OF A NOVEL LEISHMANIA JRNL TITL 2 TRYPANOTHIONE REDUCTASE INHIBITOR FROM HIGH THROUGHPUT JRNL TITL 3 SCREENING. JRNL REF PLOS NEGL TROP DIS V. 12 06969 2018 JRNL REFN ESSN 1935-2735 JRNL PMID 30475811 JRNL DOI 10.1371/JOURNAL.PNTD.0006969 REMARK 2 REMARK 2 RESOLUTION. 3.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.4110 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 132.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.40000 REMARK 3 B22 (A**2) : 8.40000 REMARK 3 B33 (A**2) : -16.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.462 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.405 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.934 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3866 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3623 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5245 ; 1.424 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8352 ; 1.066 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 6.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;36.330 ;24.331 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;18.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.892 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4368 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 854 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 6.148 ;12.972 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1950 ; 6.144 ;12.970 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2437 ; 9.833 ;19.454 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2438 ; 9.833 ;19.456 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1915 ; 5.565 ;13.601 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1908 ; 5.567 ;13.594 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2797 ; 9.268 ;20.148 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4309 ;13.187 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4310 ;13.186 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ER5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0-8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.073 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15365 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.370 REMARK 200 RESOLUTION RANGE LOW (A) : 73.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 25.38 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 26.29 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2JK6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 1.4-1.7 M, TRIS-HCL REMARK 280 BUFFER PH=8.0-8.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.77500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.66500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.88750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.66500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 143.66250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.88750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.66250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 462 C - N - CD ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 32.00 -90.67 REMARK 500 ASP A 84 106.23 -42.72 REMARK 500 LEU A 227 69.47 64.58 REMARK 500 THR A 256 -61.09 -121.41 REMARK 500 ALA A 284 53.04 -112.13 REMARK 500 ARG A 290 56.93 -110.92 REMARK 500 GLN A 295 71.10 61.79 REMARK 500 MET A 333 40.47 78.19 REMARK 500 THR A 348 -71.57 -54.73 REMARK 500 VAL A 349 -72.26 -74.25 REMARK 500 PHE A 367 58.81 -91.41 REMARK 500 SER A 394 104.42 -166.13 REMARK 500 LEU A 399 -50.67 -24.56 REMARK 500 SER A 406 60.62 -108.06 REMARK 500 ARG A 414 109.41 -161.79 REMARK 500 ARG A 472 -54.52 -120.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BVN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 DBREF 6ER5 A 1 488 UNP A4HSF7 A4HSF7_LEIIN 1 488 SEQRES 1 A 488 MET SER ARG ALA TYR ASP LEU VAL VAL LEU GLY ALA GLY SEQRES 2 A 488 SER GLY GLY LEU GLU ALA GLY TRP ASN ALA ALA VAL THR SEQRES 3 A 488 HIS LYS LYS LYS VAL ALA VAL VAL ASP VAL GLN ALA THR SEQRES 4 A 488 HIS GLY PRO PRO LEU PHE ALA ALA LEU GLY GLY THR CYS SEQRES 5 A 488 VAL ASN VAL GLY CYS VAL PRO LYS LYS LEU MET VAL THR SEQRES 6 A 488 GLY ALA GLN TYR MET ASP LEU ILE ARG GLU SER GLY GLY SEQRES 7 A 488 PHE GLY TRP GLU MET ASP ARG GLU SER LEU CYS PRO ASN SEQRES 8 A 488 TRP LYS THR LEU ILE ALA ALA LYS ASN LYS VAL VAL ASN SEQRES 9 A 488 SER ILE ASN GLU SER TYR LYS SER MET PHE ALA ASP THR SEQRES 10 A 488 GLU GLY LEU SER PHE HIS MET GLY PHE GLY ALA LEU GLN SEQRES 11 A 488 ASP ALA HIS THR VAL VAL VAL ARG LYS SER GLU ASP PRO SEQRES 12 A 488 HIS SER ASP VAL LEU GLU THR LEU ASP THR GLU TYR ILE SEQRES 13 A 488 LEU ILE ALA THR GLY SER TRP PRO THR ARG LEU GLY VAL SEQRES 14 A 488 PRO GLY ASP GLU PHE CYS ILE THR SER ASN GLU ALA PHE SEQRES 15 A 488 TYR LEU GLU ASP ALA PRO LYS ARG MET LEU CYS VAL GLY SEQRES 16 A 488 GLY GLY TYR ILE ALA VAL GLU PHE ALA GLY ILE PHE ASN SEQRES 17 A 488 GLY TYR LYS PRO CYS GLY GLY TYR VAL ASP LEU CYS TYR SEQRES 18 A 488 ARG GLY ASP LEU ILE LEU ARG GLY PHE ASP THR GLU VAL SEQRES 19 A 488 ARG LYS SER LEU THR LYS GLN LEU GLY ALA ASN GLY ILE SEQRES 20 A 488 ARG VAL ARG THR ASN LEU ASN PRO THR LYS ILE THR LYS SEQRES 21 A 488 ASN GLU ASP GLY SER ASN HIS VAL HIS PHE ASN ASP GLY SEQRES 22 A 488 THR GLU GLU ASP TYR ASP GLN VAL MET LEU ALA ILE GLY SEQRES 23 A 488 ARG VAL PRO ARG SER GLN ALA LEU GLN LEU ASP LYS ALA SEQRES 24 A 488 GLY VAL ARG THR GLY LYS ASN GLY ALA VAL GLN VAL ASP SEQRES 25 A 488 ALA TYR SER LYS THR SER VAL ASP ASN ILE TYR ALA ILE SEQRES 26 A 488 GLY ASP VAL THR ASN ARG VAL MET LEU THR PRO VAL ALA SEQRES 27 A 488 ILE ASN GLU GLY ALA ALA PHE VAL GLU THR VAL PHE GLY SEQRES 28 A 488 GLY LYS PRO ARG ALA THR ASP HIS THR LYS VAL ALA CYS SEQRES 29 A 488 ALA VAL PHE SER ILE PRO PRO ILE GLY THR CYS GLY MET SEQRES 30 A 488 THR GLU GLU GLU ALA ALA LYS ASN TYR GLU THR VAL ALA SEQRES 31 A 488 VAL TYR ALA SER SER PHE THR PRO LEU MET HIS ASN ILE SEQRES 32 A 488 SER GLY SER LYS HIS LYS GLU PHE MET ILE ARG ILE ILE SEQRES 33 A 488 THR ASN GLU SER ASN GLY GLU VAL LEU GLY VAL HIS MET SEQRES 34 A 488 LEU GLY ASP SER ALA PRO GLU ILE ILE GLN SER VAL GLY SEQRES 35 A 488 ILE CYS MET LYS MET GLY ALA LYS ILE SER ASP PHE HIS SEQRES 36 A 488 SER THR ILE GLY VAL HIS PRO THR SER ALA GLU GLU LEU SEQRES 37 A 488 CYS SER MET ARG THR PRO ALA TYR PHE TYR GLU SER GLY SEQRES 38 A 488 LYS ARG VAL GLU LYS LEU SER HET FAD A 501 53 HET BVN A 502 30 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM BVN 2-(DIETHYLAMINO)ETHYL 4-((3-(4-NITROPHENYL)-3- HETNAM 2 BVN OXOPROPYL)AMINO)BENZOATE HETNAM SO4 SULFATE ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 BVN C22 H27 N3 O5 FORMUL 4 SO4 2(O4 S 2-) HELIX 1 AA1 GLY A 13 HIS A 27 1 15 HELIX 2 AA2 GLY A 49 GLY A 56 1 8 HELIX 3 AA3 GLY A 56 GLY A 77 1 22 HELIX 4 AA4 GLY A 78 GLY A 80 5 3 HELIX 5 AA5 ASN A 91 THR A 117 1 27 HELIX 6 AA6 GLY A 171 CYS A 175 5 5 HELIX 7 AA7 THR A 177 PHE A 182 1 6 HELIX 8 AA8 GLY A 197 LYS A 211 1 15 HELIX 9 AA9 ASP A 231 ASN A 245 1 15 HELIX 10 AB1 LEU A 296 GLY A 300 5 5 HELIX 11 AB2 GLY A 304 ALA A 308 5 5 HELIX 12 AB3 LEU A 334 VAL A 349 1 16 HELIX 13 AB4 THR A 378 TYR A 386 1 9 HELIX 14 AB5 MET A 400 GLY A 405 1 6 HELIX 15 AB6 SER A 433 MET A 447 1 15 HELIX 16 AB7 LYS A 450 THR A 457 1 8 HELIX 17 AB8 THR A 463 CYS A 469 5 7 SHEET 1 AA1 6 LEU A 120 MET A 124 0 SHEET 2 AA1 6 VAL A 31 ASP A 35 1 N VAL A 33 O SER A 121 SHEET 3 AA1 6 TYR A 5 LEU A 10 1 N VAL A 9 O VAL A 34 SHEET 4 AA1 6 VAL A 147 ILE A 158 1 O LEU A 157 N LEU A 10 SHEET 5 AA1 6 THR A 134 ARG A 138 -1 N VAL A 135 O LEU A 151 SHEET 6 AA1 6 PHE A 126 ASP A 131 -1 N GLN A 130 O THR A 134 SHEET 1 AA2 5 LEU A 120 MET A 124 0 SHEET 2 AA2 5 VAL A 31 ASP A 35 1 N VAL A 33 O SER A 121 SHEET 3 AA2 5 TYR A 5 LEU A 10 1 N VAL A 9 O VAL A 34 SHEET 4 AA2 5 VAL A 147 ILE A 158 1 O LEU A 157 N LEU A 10 SHEET 5 AA2 5 ILE A 322 ALA A 324 1 O TYR A 323 N ILE A 158 SHEET 1 AA3 2 SER A 162 PRO A 164 0 SHEET 2 AA3 2 ARG A 287 PRO A 289 -1 O VAL A 288 N TRP A 163 SHEET 1 AA4 4 ARG A 248 ARG A 250 0 SHEET 2 AA4 4 TYR A 216 CYS A 220 1 N VAL A 217 O ARG A 248 SHEET 3 AA4 4 ARG A 190 VAL A 194 1 N CYS A 193 O ASP A 218 SHEET 4 AA4 4 GLN A 280 LEU A 283 1 O MET A 282 N VAL A 194 SHEET 1 AA5 3 LYS A 257 LYS A 260 0 SHEET 2 AA5 3 ASN A 266 HIS A 269 -1 O HIS A 267 N THR A 259 SHEET 3 AA5 3 GLU A 275 TYR A 278 -1 O GLU A 276 N VAL A 268 SHEET 1 AA6 5 ALA A 363 VAL A 366 0 SHEET 2 AA6 5 ILE A 372 GLY A 376 -1 O THR A 374 N CYS A 364 SHEET 3 AA6 5 GLU A 423 LEU A 430 -1 O MET A 429 N GLY A 373 SHEET 4 AA6 5 PHE A 411 ASN A 418 -1 N ILE A 416 O GLY A 426 SHEET 5 AA6 5 SER A 394 PHE A 396 -1 N PHE A 396 O PHE A 411 SHEET 1 AA7 7 ALA A 363 VAL A 366 0 SHEET 2 AA7 7 ILE A 372 GLY A 376 -1 O THR A 374 N CYS A 364 SHEET 3 AA7 7 GLU A 423 LEU A 430 -1 O MET A 429 N GLY A 373 SHEET 4 AA7 7 PHE A 411 ASN A 418 -1 N ILE A 416 O GLY A 426 SHEET 5 AA7 7 THR A 388 VAL A 391 -1 N ALA A 390 O THR A 417 SHEET 6 AA7 7 TYR A 476 GLU A 479 -1 O TYR A 476 N VAL A 391 SHEET 7 AA7 7 ARG A 483 VAL A 484 -1 O VAL A 484 N PHE A 477 SSBOND 1 CYS A 52 CYS A 57 1555 1555 2.03 SSBOND 2 CYS A 89 CYS A 213 1555 1555 2.06 SITE 1 AC1 32 GLY A 11 GLY A 13 SER A 14 GLY A 15 SITE 2 AC1 32 GLY A 16 ASP A 35 VAL A 36 ALA A 46 SITE 3 AC1 32 ALA A 47 GLY A 50 THR A 51 CYS A 52 SITE 4 AC1 32 GLY A 56 CYS A 57 LYS A 60 GLY A 127 SITE 5 AC1 32 ALA A 159 THR A 160 GLY A 161 TYR A 198 SITE 6 AC1 32 ILE A 199 ARG A 287 ARG A 290 ILE A 325 SITE 7 AC1 32 GLY A 326 ASP A 327 MET A 333 LEU A 334 SITE 8 AC1 32 THR A 335 PRO A 336 HIS A 461 PRO A 462 SITE 1 AC2 5 TYR A 221 ARG A 222 ARG A 228 ILE A 285 SITE 2 AC2 5 SO4 A 504 SITE 1 AC3 1 ARG A 3 SITE 1 AC4 5 GLY A 197 ILE A 199 ILE A 285 GLY A 286 SITE 2 AC4 5 BVN A 502 CRYST1 103.330 103.330 191.550 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005221 0.00000