HEADER HYDROLASE 23-OCT-17 6ESM TITLE CRYSTAL STRUCTURE OF MMP9 IN COMPLEX WITH INHIBITOR BE4. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX METALLOPROTEINASE-9,MATRIX METALLOPROTEINASE-9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE, COMPND 5 GELATINASE B,GELB,MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE, COMPND 6 GELATINASE B,GELB; COMPND 7 EC: 3.4.24.35,3.4.24.35; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: CATALYTIC DOMAIN OF MMP-9 WITHOUT THE FIBRONECTIN COMPND 11 DOMAINS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP9, CLG4B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METZINCIN, CARBOXYLATE INHIBITOR ALTERNATIVE ZINC-BINDING GROUPS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CICCONE,L.TEPSHI,E.NUTI,A.ROSSELLO,E.A.STURA REVDAT 3 17-JAN-24 6ESM 1 LINK REVDAT 2 06-JUN-18 6ESM 1 JRNL ATOM REVDAT 1 16-MAY-18 6ESM 0 JRNL AUTH E.NUTI,D.CUFFARO,E.BERNARDINI,C.CAMODECA,L.PANELLI,S.CHAVES, JRNL AUTH 2 L.CICCONE,L.TEPSHI,L.VERA,E.ORLANDINI,S.NENCETTI,E.A.STURA, JRNL AUTH 3 M.A.SANTOS,V.DIVE,A.ROSSELLO JRNL TITL DEVELOPMENT OF THIOARYL-BASED MATRIX METALLOPROTEINASE-12 JRNL TITL 2 INHIBITORS WITH ALTERNATIVE ZINC-BINDING GROUPS: SYNTHESIS, JRNL TITL 3 POTENTIOMETRIC, NMR, AND CRYSTALLOGRAPHIC STUDIES. JRNL REF J. MED. CHEM. V. 61 4421 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29727184 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00096 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 114452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7034 - 3.4294 1.00 3687 190 0.1431 0.1523 REMARK 3 2 3.4294 - 2.7225 1.00 3682 191 0.1435 0.1432 REMARK 3 3 2.7225 - 2.3785 1.00 3657 193 0.1458 0.1443 REMARK 3 4 2.3785 - 2.1611 1.00 3662 194 0.1333 0.1364 REMARK 3 5 2.1611 - 2.0062 1.00 3667 189 0.1273 0.1532 REMARK 3 6 2.0062 - 1.8879 1.00 3647 191 0.1277 0.1558 REMARK 3 7 1.8879 - 1.7934 1.00 3684 195 0.1238 0.1335 REMARK 3 8 1.7934 - 1.7153 1.00 3642 197 0.1279 0.1597 REMARK 3 9 1.7153 - 1.6493 1.00 3661 191 0.1274 0.1603 REMARK 3 10 1.6493 - 1.5924 1.00 3673 191 0.1294 0.1470 REMARK 3 11 1.5924 - 1.5426 1.00 3694 194 0.1308 0.1418 REMARK 3 12 1.5426 - 1.4985 1.00 3689 192 0.1346 0.1616 REMARK 3 13 1.4985 - 1.4591 1.00 3617 187 0.1373 0.1605 REMARK 3 14 1.4591 - 1.4235 1.00 3696 196 0.1412 0.1621 REMARK 3 15 1.4235 - 1.3911 1.00 3722 195 0.1521 0.1982 REMARK 3 16 1.3911 - 1.3615 1.00 3602 188 0.1681 0.2217 REMARK 3 17 1.3615 - 1.3343 1.00 3703 193 0.1758 0.2004 REMARK 3 18 1.3343 - 1.3091 1.00 3666 196 0.1814 0.2111 REMARK 3 19 1.3091 - 1.2857 1.00 3638 193 0.2048 0.2351 REMARK 3 20 1.2857 - 1.2639 1.00 3688 196 0.2127 0.2159 REMARK 3 21 1.2639 - 1.2435 1.00 3608 193 0.2407 0.2410 REMARK 3 22 1.2435 - 1.2244 1.00 3748 198 0.2599 0.2724 REMARK 3 23 1.2244 - 1.2064 1.00 3584 185 0.2454 0.2644 REMARK 3 24 1.2064 - 1.1894 1.00 3742 192 0.2334 0.2509 REMARK 3 25 1.1894 - 1.1733 1.00 3615 191 0.2440 0.2538 REMARK 3 26 1.1733 - 1.1581 1.00 3738 198 0.2416 0.2303 REMARK 3 27 1.1581 - 1.1436 1.00 3595 188 0.2524 0.2633 REMARK 3 28 1.1436 - 1.1298 1.00 3637 192 0.2645 0.2633 REMARK 3 29 1.1298 - 1.1167 1.00 3719 191 0.2818 0.3689 REMARK 3 30 1.1167 - 1.1041 0.66 2385 124 0.3279 0.4391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1395 REMARK 3 ANGLE : 0.802 1905 REMARK 3 CHIRALITY : 0.077 185 REMARK 3 PLANARITY : 0.006 252 REMARK 3 DIHEDRAL : 16.761 484 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ESM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.738001 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 54.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14700 REMARK 200 FOR THE DATA SET : 9.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.19000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5I12 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: HUMAN MMP9 E402Q 300 MICRO-M REMARK 280 PRECIPITANT: 31.5% MPEG 5K; .14 M IMIDAZOLE PIPERIDINE; PH 8.5 REMARK 280 CRYOPROTECTANT: 40% CM2 (25% DI-ETHYLENE GLYCOL + 25% GLYCEROL + REMARK 280 25% 1,2-PROPANEDIOL), 10% PEG 10K, 200 MILLI-M NACL, 100MILLI-M REMARK 280 PCTP 50/50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.55333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.55333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.10667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 658 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 110 REMARK 465 GLU A 111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 160 67.96 -116.96 REMARK 500 ALA A 173 -134.63 51.59 REMARK 500 ASP A 185 -165.54 64.79 REMARK 500 ASP A 185 -165.54 68.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 660 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 131 OD2 50.0 REMARK 620 3 ASP A 206 O 152.3 151.5 REMARK 620 4 ASP A 206 OD1 92.9 90.1 75.1 REMARK 620 5 GLU A 208 O 125.8 79.8 81.8 108.0 REMARK 620 6 HOH A 550 O 72.9 122.5 81.4 86.2 154.3 REMARK 620 7 HOH A 564 O 85.2 95.9 102.4 170.2 80.7 84.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 O REMARK 620 2 GLY A 197 O 170.9 REMARK 620 3 GLN A 199 O 101.6 85.7 REMARK 620 4 ASP A 201 OD1 87.8 97.1 94.6 REMARK 620 5 HOH A 407 O 89.3 82.5 163.9 97.6 REMARK 620 6 HOH A 413 O 85.7 90.2 81.5 171.5 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 ASP A 177 OD2 109.7 REMARK 620 3 HIS A 190 NE2 112.4 116.4 REMARK 620 4 HIS A 203 ND1 108.0 94.2 114.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 GLY A 183 O 87.1 REMARK 620 3 ASP A 185 O 85.9 92.6 REMARK 620 4 LEU A 187 O 89.6 175.6 90.0 REMARK 620 5 LEU A 187 O 87.6 170.4 95.0 5.5 REMARK 620 6 ASP A 205 OD2 93.1 85.7 178.1 91.6 86.6 REMARK 620 7 GLU A 208 OE2 171.3 94.8 85.6 88.9 91.6 95.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 226 NE2 REMARK 620 2 HIS A 230 NE2 100.9 REMARK 620 3 HIS A 236 NE2 112.0 99.8 REMARK 620 4 B9Z A 306 O24 99.8 87.5 145.2 REMARK 620 5 B9Z A 306 O25 114.6 131.0 97.1 55.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B9Z A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZE A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I12 RELATED DB: PDB REMARK 900 MMP9 (SAME POLYMORPH) REMARK 900 RELATED ID: 6ELA RELATED DB: PDB REMARK 900 MMP12 WITH SAME LIGAND DBREF 6ESM A 110 216 UNP P14780 MMP9_HUMAN 110 216 DBREF 6ESM A 217 269 UNP P14780 MMP9_HUMAN 392 444 SEQADV 6ESM GLN A 227 UNP P14780 GLU 402 ENGINEERED MUTATION SEQRES 1 A 160 PHE GLU GLY ASP LEU LYS TRP HIS HIS HIS ASN ILE THR SEQRES 2 A 160 TYR TRP ILE GLN ASN TYR SER GLU ASP LEU PRO ARG ALA SEQRES 3 A 160 VAL ILE ASP ASP ALA PHE ALA ARG ALA PHE ALA LEU TRP SEQRES 4 A 160 SER ALA VAL THR PRO LEU THR PHE THR ARG VAL TYR SER SEQRES 5 A 160 ARG ASP ALA ASP ILE VAL ILE GLN PHE GLY VAL ALA GLU SEQRES 6 A 160 HIS GLY ASP GLY TYR PRO PHE ASP GLY LYS ASP GLY LEU SEQRES 7 A 160 LEU ALA HIS ALA PHE PRO PRO GLY PRO GLY ILE GLN GLY SEQRES 8 A 160 ASP ALA HIS PHE ASP ASP ASP GLU LEU TRP SER LEU GLY SEQRES 9 A 160 LYS GLY VAL GLY TYR SER LEU PHE LEU VAL ALA ALA HIS SEQRES 10 A 160 GLN PHE GLY HIS ALA LEU GLY LEU ASP HIS SER SER VAL SEQRES 11 A 160 PRO GLU ALA LEU MET TYR PRO MET TYR ARG PHE THR GLU SEQRES 12 A 160 GLY PRO PRO LEU HIS LYS ASP ASP VAL ASN GLY ILE ARG SEQRES 13 A 160 HIS LEU TYR GLY HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET B9Z A 306 30 HET PZE A 307 12 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM B9Z (2~{S})-2-[2-[4-(4-METHOXYPHENYL) HETNAM 2 B9Z PHENYL]SULFANYLPHENYL]PENTANEDIOIC ACID HETNAM PZE PIPERAZINE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 B9Z C24 H22 O5 S FORMUL 8 PZE C4 H10 N2 FORMUL 9 HOH *261(H2 O) HELIX 1 AA1 PRO A 133 ALA A 150 1 18 HELIX 2 AA2 LEU A 220 LEU A 232 1 13 HELIX 3 AA3 HIS A 257 GLY A 269 1 13 SHEET 1 AA1 5 THR A 155 ARG A 158 0 SHEET 2 AA1 5 ASN A 120 ILE A 125 1 N ILE A 121 O THR A 157 SHEET 3 AA1 5 ILE A 166 GLY A 171 1 O ILE A 168 N TRP A 124 SHEET 4 AA1 5 ALA A 202 ASP A 205 1 O PHE A 204 N GLN A 169 SHEET 5 AA1 5 ALA A 189 ALA A 191 -1 N HIS A 190 O HIS A 203 SHEET 1 AA2 2 TRP A 210 SER A 211 0 SHEET 2 AA2 2 TYR A 218 SER A 219 1 O TYR A 218 N SER A 211 LINK OD1 ASP A 131 CA CA A 305 1555 1555 2.71 LINK OD2 ASP A 131 CA CA A 305 1555 1555 2.40 LINK O ASP A 165 CA CA A 304 1555 1555 2.36 LINK NE2 HIS A 175 ZN ZN A 302 1555 1555 2.01 LINK OD2 ASP A 177 ZN ZN A 302 1555 1555 1.93 LINK OD1 ASP A 182 CA CA A 303 1555 1555 2.34 LINK O GLY A 183 CA CA A 303 1555 1555 2.25 LINK O ASP A 185 CA CA A 303 1555 1555 2.38 LINK O ALEU A 187 CA CA A 303 1555 1555 2.24 LINK O BLEU A 187 CA CA A 303 1555 1555 2.34 LINK NE2 HIS A 190 ZN ZN A 302 1555 1555 2.02 LINK O GLY A 197 CA CA A 304 1555 1555 2.30 LINK O GLN A 199 CA CA A 304 1555 1555 2.33 LINK OD1 ASP A 201 CA CA A 304 1555 1555 2.38 LINK ND1 HIS A 203 ZN ZN A 302 1555 1555 2.04 LINK OD2 ASP A 205 CA CA A 303 1555 1555 2.33 LINK O ASP A 206 CA CA A 305 1555 1555 2.40 LINK OD1 ASP A 206 CA CA A 305 1555 1555 2.43 LINK OE2 GLU A 208 CA CA A 303 1555 1555 2.25 LINK O GLU A 208 CA CA A 305 1555 1555 2.35 LINK NE2 HIS A 226 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 230 ZN ZN A 301 1555 1555 2.09 LINK NE2 HIS A 236 ZN ZN A 301 1555 1555 2.03 LINK ZN ZN A 301 O24 B9Z A 306 1555 1555 2.60 LINK ZN ZN A 301 O25 B9Z A 306 1555 1555 1.99 LINK CA CA A 304 O HOH A 407 1555 1555 2.36 LINK CA CA A 304 O HOH A 413 1555 1555 2.38 LINK CA CA A 305 O HOH A 550 1555 1555 2.37 LINK CA CA A 305 O HOH A 564 1555 1555 2.41 SITE 1 AC1 4 HIS A 226 HIS A 230 HIS A 236 B9Z A 306 SITE 1 AC2 4 HIS A 175 ASP A 177 HIS A 190 HIS A 203 SITE 1 AC3 6 ASP A 182 GLY A 183 ASP A 185 LEU A 187 SITE 2 AC3 6 ASP A 205 GLU A 208 SITE 1 AC4 6 ASP A 165 GLY A 197 GLN A 199 ASP A 201 SITE 2 AC4 6 HOH A 407 HOH A 413 SITE 1 AC5 5 ASP A 131 ASP A 206 GLU A 208 HOH A 550 SITE 2 AC5 5 HOH A 564 SITE 1 AC6 19 GLY A 186 LEU A 187 ALA A 189 HIS A 226 SITE 2 AC6 19 GLN A 227 HIS A 230 HIS A 236 LEU A 243 SITE 3 AC6 19 TYR A 245 PRO A 246 MET A 247 TYR A 248 SITE 4 AC6 19 ARG A 249 ZN A 301 PZE A 307 HOH A 408 SITE 5 AC6 19 HOH A 419 HOH A 463 HOH A 526 SITE 1 AC7 5 TYR A 179 HIS A 190 ALA A 191 PHE A 192 SITE 2 AC7 5 B9Z A 306 CRYST1 39.690 39.690 163.660 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025195 0.014546 0.000000 0.00000 SCALE2 0.000000 0.029093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006110 0.00000