HEADER PLANT PROTEIN 26-OCT-17 6ETF TITLE THE STRUCTURE OF THE MO-INSERTASE DOMAIN CNX1E FROM ARABIDOPSIS TITLE 2 THALIANA IN COMPLEX WITH AMP AND MOLYBDATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1; COMPND 5 EC: 2.10.1.1,2.7.7.75; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CNX1, AT5G20990, F22D1.6, T10F18.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RK5204; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGPLUS-CNX1E KEYWDS ARABIDOPSIS, ARABIDOPSIS PROTEINS, COENZYMES, METALLOPROTEINS, KEYWDS 2 CATALYTIC DOMAIN, NUCLEOTIDE BINDING, ENTROPIC ENZYME, ADENOSINE KEYWDS 3 MONOPHOSPHATE, MOLYBDATE, ALTERNATE BINDING, INSERTION MECHANISM, KEYWDS 4 PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE REVDAT 2 17-JAN-24 6ETF 1 LINK REVDAT 1 18-JUL-18 6ETF 0 JRNL AUTH J.KRAUSZE,T.W.HERCHER,D.ZWERSCHKE,M.L.KIRK,W.BLANKENFELDT, JRNL AUTH 2 R.R.MENDEL,T.KRUSE JRNL TITL THE FUNCTIONAL PRINCIPLE OF EUKARYOTIC MOLYBDENUM JRNL TITL 2 INSERTASES. JRNL REF BIOCHEM. J. V. 475 1739 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29717023 JRNL DOI 10.1042/BCJ20170935 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.5 REMARK 3 NUMBER OF REFLECTIONS : 34550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.02 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 136 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4038 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 128 REMARK 3 BIN R VALUE (WORKING SET) : 0.4007 REMARK 3 BIN FREE R VALUE : 0.4499 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11670 REMARK 3 B22 (A**2) : 0.58920 REMARK 3 B33 (A**2) : -0.47250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.166 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.258 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.144 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6550 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11937 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1437 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 993 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6550 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 450 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7138 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.65 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.53 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|16 - 192 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.7543 17.6926 27.0374 REMARK 3 T TENSOR REMARK 3 T11: -0.0587 T22: -0.0606 REMARK 3 T33: -0.0908 T12: -0.0378 REMARK 3 T13: 0.0384 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.7778 L22: 0.5539 REMARK 3 L33: 2.0136 L12: -0.0515 REMARK 3 L13: 0.7262 L23: -0.0869 REMARK 3 S TENSOR REMARK 3 S11: 0.0814 S12: -0.2396 S13: 0.1378 REMARK 3 S21: 0.2179 S22: -0.0959 S23: 0.0041 REMARK 3 S31: -0.2052 S32: -0.2690 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|193 - 442 } REMARK 3 ORIGIN FOR THE GROUP (A): 26.1303 20.7559 -16.9207 REMARK 3 T TENSOR REMARK 3 T11: -0.0584 T22: -0.0748 REMARK 3 T33: -0.0647 T12: 0.0714 REMARK 3 T13: 0.0001 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.6193 L22: 0.9764 REMARK 3 L33: 1.7371 L12: 0.0706 REMARK 3 L13: -0.1524 L23: 0.3481 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.0794 S13: 0.0784 REMARK 3 S21: -0.1740 S22: -0.0751 S23: 0.1195 REMARK 3 S31: -0.3167 S32: -0.0891 S33: -0.0165 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ETF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77 REMARK 200 MONOCHROMATOR : SI111 DOUBLE CRYSTAL WITH REMARK 200 SAGITAL BENDER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 1, 2016 REMARK 200 DATA SCALING SOFTWARE : STARANISO 1.0.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.781 REMARK 200 RESOLUTION RANGE LOW (A) : 45.072 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.6 REMARK 200 DATA REDUNDANCY : 15.38 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5580 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.72 REMARK 200 R MERGE FOR SHELL (I) : 1.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.527 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5G2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (V/V) 1,2-ETHANEDIOL; 10 % (W/V) REMARK 280 PEG 8000; 0.3 M MGCL2; 0.3 M CACL2; 0.1 M TRIS/BICINE, PH 7.4, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.89500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.89500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.89500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.89500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.11000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 982 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 SER A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 CYS A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 GLU A 15 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 LEU A 313 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LEU A 447 REMARK 465 SER A 448 REMARK 465 GLU A 449 REMARK 465 PRO A 450 REMARK 465 GLY A 451 REMARK 465 SER A 452 REMARK 465 THR A 453 REMARK 465 SER A 454 REMARK 465 GLY A 455 REMARK 465 GLY A 456 REMARK 465 SER A 457 REMARK 465 ALA A 458 REMARK 465 TRP A 459 REMARK 465 SER A 460 REMARK 465 HIS A 461 REMARK 465 PRO A 462 REMARK 465 GLN A 463 REMARK 465 PHE A 464 REMARK 465 GLU A 465 REMARK 465 LYS A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 135 CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 145 CD CE NZ REMARK 470 LYS A 245 CD CE NZ REMARK 470 LYS A 290 CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 ILE A 436 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 41 O HOH A 601 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ILE A 436 CB ILE A 436 3655 1.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 269 -140.98 -95.68 REMARK 500 LYS A 297 -54.99 175.32 REMARK 500 ASP A 435 105.70 -29.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1024 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1025 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1026 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1027 DISTANCE = 7.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A 501 O2P REMARK 620 2 HOH A 613 O 93.0 REMARK 620 3 HOH A 654 O 91.7 175.2 REMARK 620 4 HOH A 666 O 173.7 91.4 83.8 REMARK 620 5 HOH A 778 O 90.5 90.2 90.7 94.1 REMARK 620 6 HOH A 838 O 97.2 84.6 93.8 78.7 171.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDCM8 RELATED DB: SASBDB DBREF 6ETF A 1 452 UNP Q39054 CNX1_ARATH 1 452 SEQADV 6ETF MET A -4 UNP Q39054 INITIATING METHIONINE SEQADV 6ETF SER A -3 UNP Q39054 EXPRESSION TAG SEQADV 6ETF ARG A -2 UNP Q39054 EXPRESSION TAG SEQADV 6ETF GLY A -1 UNP Q39054 EXPRESSION TAG SEQADV 6ETF SER A 0 UNP Q39054 EXPRESSION TAG SEQADV 6ETF THR A 453 UNP Q39054 EXPRESSION TAG SEQADV 6ETF SER A 454 UNP Q39054 EXPRESSION TAG SEQADV 6ETF GLY A 455 UNP Q39054 EXPRESSION TAG SEQADV 6ETF GLY A 456 UNP Q39054 EXPRESSION TAG SEQADV 6ETF SER A 457 UNP Q39054 EXPRESSION TAG SEQADV 6ETF ALA A 458 UNP Q39054 EXPRESSION TAG SEQADV 6ETF TRP A 459 UNP Q39054 EXPRESSION TAG SEQADV 6ETF SER A 460 UNP Q39054 EXPRESSION TAG SEQADV 6ETF HIS A 461 UNP Q39054 EXPRESSION TAG SEQADV 6ETF PRO A 462 UNP Q39054 EXPRESSION TAG SEQADV 6ETF GLN A 463 UNP Q39054 EXPRESSION TAG SEQADV 6ETF PHE A 464 UNP Q39054 EXPRESSION TAG SEQADV 6ETF GLU A 465 UNP Q39054 EXPRESSION TAG SEQADV 6ETF LYS A 466 UNP Q39054 EXPRESSION TAG SEQRES 1 A 471 MET SER ARG GLY SER MET GLU GLY GLN GLY CYS CYS GLY SEQRES 2 A 471 GLY GLY GLY GLY LYS THR GLU MET ILE PRO THR GLU GLU SEQRES 3 A 471 ALA LEU ARG ILE VAL PHE GLY VAL SER LYS ARG LEU PRO SEQRES 4 A 471 PRO VAL ILE VAL SER LEU TYR GLU ALA LEU GLY LYS VAL SEQRES 5 A 471 LEU ALA GLU ASP ILE ARG ALA PRO ASP PRO LEU PRO PRO SEQRES 6 A 471 TYR PRO ALA SER VAL LYS ASP GLY TYR ALA VAL VAL ALA SEQRES 7 A 471 SER ASP GLY PRO GLY GLU TYR PRO VAL ILE THR GLU SER SEQRES 8 A 471 ARG ALA GLY ASN ASP GLY LEU GLY VAL THR VAL THR PRO SEQRES 9 A 471 GLY THR VAL ALA TYR VAL THR THR GLY GLY PRO ILE PRO SEQRES 10 A 471 ASP GLY ALA ASP ALA VAL VAL GLN VAL GLU ASP THR LYS SEQRES 11 A 471 VAL ILE GLY ASP VAL SER THR GLU SER LYS ARG VAL LYS SEQRES 12 A 471 ILE LEU ILE GLN THR LYS LYS GLY THR ASP ILE ARG ARG SEQRES 13 A 471 VAL GLY CYS ASP ILE GLU LYS ASP ALA THR VAL LEU THR SEQRES 14 A 471 THR GLY GLU ARG ILE GLY ALA SER GLU ILE GLY LEU LEU SEQRES 15 A 471 ALA THR ALA GLY VAL THR MET VAL LYS VAL TYR PRO MET SEQRES 16 A 471 PRO ILE VAL ALA ILE LEU SER THR GLY ASP GLU LEU VAL SEQRES 17 A 471 GLU PRO THR ALA GLY THR LEU GLY ARG GLY GLN ILE ARG SEQRES 18 A 471 ASP SER ASN ARG ALA MET LEU VAL ALA ALA VAL MET GLN SEQRES 19 A 471 GLN GLN CYS LYS VAL VAL ASP LEU GLY ILE VAL ARG ASP SEQRES 20 A 471 ASP ARG LYS GLU LEU GLU LYS VAL LEU ASP GLU ALA VAL SEQRES 21 A 471 SER SER GLY VAL ASP ILE ILE LEU THR SER GLY GLY VAL SEQRES 22 A 471 SER MET GLY ASP ARG ASP PHE VAL LYS PRO LEU LEU GLU SEQRES 23 A 471 GLU LYS GLY LYS VAL TYR PHE SER LYS VAL LEU MET LYS SEQRES 24 A 471 PRO GLY LYS PRO LEU THR PHE ALA GLU ILE ARG ALA LYS SEQRES 25 A 471 PRO THR GLU SER MET LEU GLY LYS THR VAL LEU ALA PHE SEQRES 26 A 471 GLY LEU PRO GLY ASN PRO VAL SER CYS LEU VAL CYS PHE SEQRES 27 A 471 ASN ILE PHE VAL VAL PRO THR ILE ARG GLN LEU ALA GLY SEQRES 28 A 471 TRP THR SER PRO HIS PRO LEU ARG VAL ARG LEU ARG LEU SEQRES 29 A 471 GLN GLU PRO ILE LYS SER ASP PRO ILE ARG PRO GLU PHE SEQRES 30 A 471 HIS ARG ALA ILE ILE LYS TRP LYS ASP ASN ASP GLY SER SEQRES 31 A 471 GLY THR PRO GLY PHE VAL ALA GLU SER THR GLY HIS GLN SEQRES 32 A 471 MET SER SER ARG LEU LEU SER MET ARG SER ALA ASN ALA SEQRES 33 A 471 LEU LEU GLU LEU PRO ALA THR GLY ASN VAL LEU SER ALA SEQRES 34 A 471 GLY SER SER VAL SER ALA ILE ILE VAL SER ASP ILE SER SEQRES 35 A 471 ALA PHE SER ILE ASP LYS LYS ALA SER LEU SER GLU PRO SEQRES 36 A 471 GLY SER THR SER GLY GLY SER ALA TRP SER HIS PRO GLN SEQRES 37 A 471 PHE GLU LYS HET AMP A 501 35 HET MG A 502 1 HET MOO A 503 10 HET EDO A 504 10 HET EDO A 505 10 HET EDO A 506 10 HET EDO A 507 10 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MOO MOLYBDATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN MOO MOLYBDATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 MG MG 2+ FORMUL 4 MOO MO O4 2- FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *427(H2 O) HELIX 1 AA1 THR A 19 SER A 30 1 12 HELIX 2 AA2 VAL A 72 GLY A 76 5 5 HELIX 3 AA3 GLY A 170 ALA A 180 1 11 HELIX 4 AA4 SER A 218 GLN A 230 1 13 HELIX 5 AA5 ASP A 243 SER A 257 1 15 HELIX 6 AA6 PHE A 275 GLY A 284 1 10 HELIX 7 AA7 ASN A 325 ALA A 345 1 21 HELIX 8 AA8 ARG A 402 ARG A 407 5 6 HELIX 9 AA9 ASP A 435 PHE A 439 5 5 SHEET 1 AA1 2 ILE A 17 PRO A 18 0 SHEET 2 AA1 2 VAL A 291 LEU A 292 1 O LEU A 292 N ILE A 17 SHEET 1 AA2 3 VAL A 36 SER A 39 0 SHEET 2 AA2 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38 SHEET 3 AA2 3 VAL A 47 LEU A 48 -1 N VAL A 47 O TYR A 188 SHEET 1 AA3 2 ILE A 52 ARG A 53 0 SHEET 2 AA3 2 THR A 161 LEU A 163 -1 O LEU A 163 N ILE A 52 SHEET 1 AA4 2 ALA A 63 SER A 64 0 SHEET 2 AA4 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63 SHEET 1 AA5 6 ALA A 117 GLN A 120 0 SHEET 2 AA5 6 GLY A 68 VAL A 71 -1 N VAL A 71 O ALA A 117 SHEET 3 AA5 6 VAL A 102 VAL A 105 -1 O VAL A 105 N GLY A 68 SHEET 4 AA5 6 GLY A 78 SER A 86 1 N SER A 86 O TYR A 104 SHEET 5 AA5 6 ARG A 136 ILE A 139 -1 O VAL A 137 N TYR A 80 SHEET 6 AA5 6 THR A 124 ILE A 127 -1 N LYS A 125 O LYS A 138 SHEET 1 AA6 6 LYS A 233 VAL A 240 0 SHEET 2 AA6 6 ILE A 192 THR A 198 1 N ILE A 195 O LEU A 237 SHEET 3 AA6 6 ILE A 261 SER A 265 1 O LEU A 263 N ALA A 194 SHEET 4 AA6 6 LYS A 315 LEU A 322 1 O LEU A 318 N ILE A 262 SHEET 5 AA6 6 THR A 300 ALA A 306 -1 N ALA A 302 O ALA A 319 SHEET 6 AA6 6 LYS A 285 PHE A 288 -1 N LYS A 285 O GLU A 303 SHEET 1 AA7 2 LEU A 202 VAL A 203 0 SHEET 2 AA7 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203 SHEET 1 AA8 6 ARG A 354 LEU A 359 0 SHEET 2 AA8 6 GLY A 389 SER A 394 1 O ALA A 392 N ARG A 358 SHEET 3 AA8 6 GLU A 371 LYS A 380 -1 N LYS A 380 O GLY A 389 SHEET 4 AA8 6 ALA A 411 LEU A 415 -1 O LEU A 413 N HIS A 373 SHEET 5 AA8 6 SER A 427 ILE A 432 -1 O SER A 429 N GLU A 414 SHEET 6 AA8 6 ARG A 354 LEU A 359 -1 N LEU A 357 O VAL A 428 SHEET 1 AA9 2 ILE A 363 LYS A 364 0 SHEET 2 AA9 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363 LINK O2P AMP A 501 MG MG A 502 1555 1555 2.02 LINK MG MG A 502 O HOH A 613 1555 1555 2.05 LINK MG MG A 502 O HOH A 654 1555 1555 2.16 LINK MG MG A 502 O HOH A 666 1555 1555 2.18 LINK MG MG A 502 O HOH A 778 1555 1555 2.13 LINK MG MG A 502 O HOH A 838 1555 3655 2.13 CISPEP 1 LEU A 58 PRO A 59 0 -9.98 CISPEP 2 LYS A 294 PRO A 295 0 -2.80 CISPEP 3 LYS A 294 PRO A 295 0 5.05 SITE 1 AC1 25 THR A 107 GLY A 108 SER A 197 GLU A 201 SITE 2 AC1 25 LEU A 202 ILE A 215 ASP A 217 SER A 218 SITE 3 AC1 25 ASN A 219 GLY A 266 GLY A 267 SER A 269 SITE 4 AC1 25 GLY A 324 ASN A 325 MG A 502 HOH A 604 SITE 5 AC1 25 HOH A 612 HOH A 613 HOH A 623 HOH A 654 SITE 6 AC1 25 HOH A 684 HOH A 735 HOH A 763 HOH A 778 SITE 7 AC1 25 HOH A 807 SITE 1 AC2 6 AMP A 501 HOH A 613 HOH A 654 HOH A 666 SITE 2 AC2 6 HOH A 778 HOH A 838 SITE 1 AC3 14 LYS A 294 PRO A 295 GLY A 296 LYS A 297 SITE 2 AC3 14 PRO A 298 ASN A 325 SER A 328 ARG A 369 SITE 3 AC3 14 SER A 400 HOH A 607 HOH A 669 HOH A 729 SITE 4 AC3 14 HOH A 800 HOH A 835 SITE 1 AC4 4 GLY A 166 TRP A 347 THR A 348 SER A 349 SITE 1 AC5 6 GLY A 170 SER A 172 GLU A 173 ALA A 409 SITE 2 AC5 6 SER A 434 HOH A 686 SITE 1 AC6 3 ARG A 53 VAL A 182 HOH A 658 SITE 1 AC7 4 GLU A 85 TYR A 104 ASP A 272 HOH A 637 CRYST1 67.110 123.570 131.790 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014901 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007588 0.00000