HEADER HYDROLASE 30-OCT-17 6EUG TITLE THE GH43, BETA 1,3 GALACTOSIDASE, BT3683 WITH GALACTOIMIDAZOLE CAVEAT 6EUG GIM A 401 HAS WRONG CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCANASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOSYL HYDROLASE FAMILY 16; COMPND 5 EC: 3.2.1.73; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BGLA_4, BJP75_03275, BTHETA7330_04612, ERS852430_04551, SOURCE 5 HMPREF2534_02351; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABIOGALACTAN, GH43, BETA 1, 3 GALACTOSIDASE, HYDROLASE, KEYWDS 2 HEXASACCHARIDE EXPDTA X-RAY DIFFRACTION AUTHOR A.CARTMELL,H.J.GILBERT REVDAT 4 08-MAY-24 6EUG 1 REMARK REVDAT 3 16-OCT-19 6EUG 1 REMARK REVDAT 2 01-MAY-19 6EUG 1 JRNL REVDAT 1 17-OCT-18 6EUG 0 JRNL AUTH A.CARTMELL,J.MUNOZ-MUNOZ,J.A.BRIGGS,D.A.NDEH,E.C.LOWE, JRNL AUTH 2 A.BASLE,N.TERRAPON,K.STOTT,T.HEUNIS,J.GRAY,L.YU,P.DUPREE, JRNL AUTH 3 P.Z.FERNANDES,S.SHAH,S.J.WILLIAMS,A.LABOUREL,M.TROST, JRNL AUTH 4 B.HENRISSAT,H.J.GILBERT JRNL TITL A SURFACE ENDOGALACTANASE IN BACTEROIDES THETAIOTAOMICRON JRNL TITL 2 CONFERS KEYSTONE STATUS FOR ARABINOGALACTAN DEGRADATION. JRNL REF NAT MICROBIOL V. 3 1314 2018 JRNL REFN ESSN 2058-5276 JRNL PMID 30349080 JRNL DOI 10.1038/S41564-018-0258-8 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2255 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2936 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2573 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3998 ; 1.532 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5973 ; 0.989 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 6.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;31.976 ;23.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;12.764 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.538 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3351 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 666 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1432 ; 1.921 ; 1.813 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1431 ; 1.897 ; 1.811 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1804 ; 2.319 ; 2.722 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1805 ; 2.333 ; 2.724 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 2.457 ; 2.078 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1505 ; 2.456 ; 2.078 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2195 ; 2.740 ; 3.016 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3222 ; 3.293 ;21.626 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3223 ; 3.293 ;21.624 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5509 ; 1.693 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 310 ;21.312 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5509 ; 7.531 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 25.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350 0.2 M AMMONIUM FORMATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.70100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.08719 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.23167 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 67.70100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 39.08719 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.23167 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 67.70100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 39.08719 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.23167 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.17438 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.46333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 78.17438 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.46333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 78.17438 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.46333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ASP A 221 CG OD1 OD2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 ASP A 291 CG OD1 OD2 REMARK 470 LYS A 292 CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 LYS A 337 NZ REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 86 CG - SD - CE ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 22 71.19 -154.44 REMARK 500 LYS A 50 -39.58 -132.25 REMARK 500 ILE A 133 -63.45 -105.84 REMARK 500 ARG A 190 -107.96 -115.62 REMARK 500 THR A 299 -34.05 -132.22 REMARK 500 SER A 321 68.57 -158.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 906 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 907 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 908 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 909 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 910 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GIM A 401 DBREF1 6EUG A 1 351 UNP A0A0P0F4Y6_BACT4 DBREF2 6EUG A A0A0P0F4Y6 281 631 SEQADV 6EUG MET A -22 UNP A0A0P0F4Y INITIATING METHIONINE SEQADV 6EUG GLY A -21 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG SER A -20 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG SER A -19 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG HIS A -18 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG HIS A -17 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG HIS A -16 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG HIS A -15 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG HIS A -14 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG HIS A -13 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG SER A -12 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG SER A -11 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG GLY A -10 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG LEU A -9 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG VAL A -8 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG PRO A -7 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG ARG A -6 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG GLY A -5 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG SER A -4 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG HIS A -3 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG MET A -2 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG ALA A -1 UNP A0A0P0F4Y EXPRESSION TAG SEQADV 6EUG SER A 0 UNP A0A0P0F4Y EXPRESSION TAG SEQRES 1 A 374 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 374 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLN LYS GLU SEQRES 3 A 374 LYS GLY ILE ALA SER GLY LYS VAL TRP ARG ASP THR ASP SEQRES 4 A 374 GLY ASN VAL ILE ASN ALA HIS GLY GLY GLY ILE LEU PHE SEQRES 5 A 374 HIS GLU GLY LYS TYR TYR TRP PHE GLY GLU HIS ARG PRO SEQRES 6 A 374 ALA SER GLY PHE VAL THR GLU LYS GLY ILE ASN CYS TYR SEQRES 7 A 374 SER SER THR ASP LEU TYR ASN TRP LYS SER GLU GLY ILE SEQRES 8 A 374 ALA LEU ALA VAL SER GLU GLU GLU GLY HIS ASP ILE GLU SEQRES 9 A 374 LYS GLY CYS ILE MET GLU ARG PRO LYS VAL ILE TYR ASN SEQRES 10 A 374 ALA LYS THR GLY LYS PHE VAL MET TRP LEU HIS LEU GLU SEQRES 11 A 374 LEU LYS GLY GLN GLY TYR GLY PRO ALA ARG ALA ALA VAL SEQRES 12 A 374 ALA VAL SER ASP SER PRO ALA GLY PRO TYR ARG PHE ILE SEQRES 13 A 374 ARG SER GLY ARG VAL ASN PRO GLY ALA TYR PRO LEU ASN SEQRES 14 A 374 MET THR ARG LYS GLU ARG LYS MET LYS TRP ASN PRO GLU SEQRES 15 A 374 GLU TYR LYS GLU TRP TRP THR PRO LYS TRP TYR GLU ALA SEQRES 16 A 374 ILE ALA LYS GLY MET PHE VAL LYS ARG ASP LEU LYS ASP SEQRES 17 A 374 GLY GLN MET SER ARG ASP MET THR LEU PHE VAL ASP ASP SEQRES 18 A 374 ASP GLY LYS ALA TYR HIS ILE TYR SER SER GLU ASP ASN SEQRES 19 A 374 LEU THR LEU GLN ILE ALA GLU LEU ALA ASP ASP TYR LEU SEQRES 20 A 374 SER HIS THR GLY LYS TYR ILE ARG ILE PHE PRO GLY GLY SEQRES 21 A 374 HIS ASN GLU ALA PRO ALA ILE PHE LYS LYS GLU GLY THR SEQRES 22 A 374 TYR TRP MET ILE THR SER GLY CYS THR GLY TRP ASP PRO SEQRES 23 A 374 ASN LYS ALA ARG LEU LEU THR ALA ASP SER MET LEU GLY SEQRES 24 A 374 GLU TRP LYS GLN LEU PRO ASN PRO CYS VAL GLY GLU ASP SEQRES 25 A 374 ALA ASP LYS THR PHE GLY GLY GLN SER THR TYR ILE LEU SEQRES 26 A 374 PRO LEU PRO GLU LYS GLY GLN PHE PHE PHE MET ALA ASP SEQRES 27 A 374 MET TRP ARG PRO LYS SER LEU ALA ASP SER ARG TYR ILE SEQRES 28 A 374 TRP LEU PRO VAL GLN PHE ASP ASP LYS GLY VAL PRO PHE SEQRES 29 A 374 ILE LYS TRP MET ASP ARG TRP ASN PHE ASP HET GIM A 401 14 HETNAM GIM GLUCOIMIDAZOLE HETSYN GIM (5S,6S,7R,8R)-5-(HYDROXYMETHYL)-1,5,6,7,8,8A- HETSYN 2 GIM HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL FORMUL 2 GIM C8 H13 N2 O4 1+ FORMUL 3 HOH *410(H2 O) HELIX 1 AA1 THR A 148 MET A 154 1 7 HELIX 2 AA2 ASN A 157 TYR A 161 5 5 HELIX 3 AA3 THR A 166 LYS A 175 1 10 HELIX 4 AA4 GLY A 176 LEU A 183 1 8 HELIX 5 AA5 ASP A 289 GLY A 296 5 8 HELIX 6 AA6 PRO A 305 GLY A 308 5 4 HELIX 7 AA7 SER A 321 SER A 325 5 5 SHEET 1 AA1 4 HIS A 23 HIS A 30 0 SHEET 2 AA1 4 LYS A 33 GLU A 39 -1 O GLU A 39 N HIS A 23 SHEET 3 AA1 4 GLY A 51 SER A 57 -1 O SER A 57 N TYR A 34 SHEET 4 AA1 4 LYS A 64 ALA A 71 -1 O LYS A 64 N SER A 56 SHEET 1 AA2 4 ILE A 85 ASN A 94 0 SHEET 2 AA2 4 LYS A 99 GLU A 107 -1 O VAL A 101 N ILE A 92 SHEET 3 AA2 4 ARG A 117 SER A 123 -1 O SER A 123 N PHE A 100 SHEET 4 AA2 4 ARG A 131 GLY A 136 -1 O ARG A 131 N VAL A 122 SHEET 1 AA3 4 MET A 192 VAL A 196 0 SHEET 2 AA3 4 ALA A 202 SER A 208 -1 O TYR A 203 N PHE A 195 SHEET 3 AA3 4 THR A 213 LEU A 219 -1 O THR A 213 N SER A 208 SHEET 4 AA3 4 HIS A 226 ILE A 233 -1 O ILE A 233 N LEU A 214 SHEET 1 AA4 4 GLU A 240 LYS A 247 0 SHEET 2 AA4 4 THR A 250 SER A 256 -1 O TRP A 252 N PHE A 245 SHEET 3 AA4 4 ARG A 267 ALA A 271 -1 O LEU A 269 N MET A 253 SHEET 4 AA4 4 LYS A 279 LEU A 281 -1 O LEU A 281 N LEU A 268 SHEET 1 AA5 3 GLN A 297 LEU A 304 0 SHEET 2 AA5 3 GLN A 309 MET A 316 -1 O MET A 313 N THR A 299 SHEET 3 AA5 3 ARG A 326 PRO A 331 -1 O LEU A 330 N PHE A 312 SHEET 1 AA6 2 GLN A 333 PHE A 334 0 SHEET 2 AA6 2 PRO A 340 PHE A 341 -1 O PHE A 341 N GLN A 333 CISPEP 1 GLY A 128 PRO A 129 0 12.74 SITE 1 AC1 11 GLU A 87 ARG A 88 TYR A 113 ASP A 191 SITE 2 AC1 11 GLU A 240 GLY A 260 TRP A 261 GLN A 297 SITE 3 AC1 11 HOH A 510 HOH A 546 HOH A 725 CRYST1 135.402 135.402 51.695 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007385 0.004264 0.000000 0.00000 SCALE2 0.000000 0.008528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019344 0.00000