HEADER CELL ADHESION 31-OCT-17 6EUP
TITLE CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS NADA VARIANT 3 DOUBLE
TITLE 2 MUTANT A33I-I38L
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ADHESIN A;
COMPND 3 CHAIN: A, B, C;
COMPND 4 SYNONYM: NADA AUTOTRANSPORTER,PUTATIVE ADHESIN/INVASIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS;
SOURCE 3 ORGANISM_TAXID: 487;
SOURCE 4 GENE: NADA, NADA_1, ERS040961_00445;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TRIMERIC AUTOTRANSPORTER ADHESIN, ANTIGEN, DOUBLE MUTANT, CELL
KEYWDS 2 ADHESION
EXPDTA X-RAY DIFFRACTION
AUTHOR L.DELLO IACONO,A.LIGUORI,E.MALITO,M.J.BOTTOMLEY
REVDAT 3 08-MAY-24 6EUP 1 REMARK
REVDAT 2 31-OCT-18 6EUP 1 JRNL
REVDAT 1 10-OCT-18 6EUP 0
JRNL AUTH A.LIGUORI,L.DELLO IACONO,G.MARUGGI,B.BENUCCI,M.MEROLA,
JRNL AUTH 2 P.LO SURDO,J.LOPEZ-SAGASETA,M.PIZZA,E.MALITO,M.J.BOTTOMLEY
JRNL TITL NADA3 STRUCTURES REVEAL UNDECAD COILED COILS AND LOX1
JRNL TITL 2 BINDING REGIONS COMPETED BY MENINGOCOCCUS B VACCINE-ELICITED
JRNL TITL 3 HUMAN ANTIBODIES.
JRNL REF MBIO V. 9 2018
JRNL REFN ESSN 2150-7511
JRNL PMID 30327444
JRNL DOI 10.1128/MBIO.01914-18
REMARK 2
REMARK 2 RESOLUTION. 2.65 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.65
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9
REMARK 3 NUMBER OF REFLECTIONS : 18248
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.200
REMARK 3 R VALUE (WORKING SET) : 0.198
REMARK 3 FREE R VALUE : 0.236
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.450
REMARK 3 FREE R VALUE TEST SET COUNT : 995
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 9
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.81
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.23
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2689
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2190
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2549
REMARK 3 BIN R VALUE (WORKING SET) : 0.2170
REMARK 3 BIN FREE R VALUE : 0.2620
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.21
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3294
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 166
REMARK 3 SOLVENT ATOMS : 53
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 35.35
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.93
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -9.66670
REMARK 3 B22 (A**2) : -9.54710
REMARK 3 B33 (A**2) : 19.21380
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -3.91690
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.486
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.279
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.499
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.285
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3446 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4611 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1256 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 126 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 456 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3446 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 506 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3855 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.14
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.05
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.24
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 8.8481 -1.2145 60.3887
REMARK 3 T TENSOR
REMARK 3 T11: -0.0606 T22: 0.0724
REMARK 3 T33: -0.0909 T12: -0.0651
REMARK 3 T13: -0.0109 T23: -0.0060
REMARK 3 L TENSOR
REMARK 3 L11: 0.1576 L22: 0.0040
REMARK 3 L33: 12.5718 L12: 0.0669
REMARK 3 L13: -1.4420 L23: -0.4449
REMARK 3 S TENSOR
REMARK 3 S11: 0.0348 S12: -0.1744 S13: 0.0511
REMARK 3 S21: 0.0976 S22: 0.0327 S23: 0.0279
REMARK 3 S31: 0.4957 S32: -0.0267 S33: -0.0675
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 13.6814 -2.0940 60.3863
REMARK 3 T TENSOR
REMARK 3 T11: -0.1124 T22: 0.0715
REMARK 3 T33: -0.0830 T12: 0.0578
REMARK 3 T13: -0.0420 T23: 0.0049
REMARK 3 L TENSOR
REMARK 3 L11: 0.1475 L22: 0.0746
REMARK 3 L33: 10.9130 L12: -0.0332
REMARK 3 L13: 0.9408 L23: -0.6272
REMARK 3 S TENSOR
REMARK 3 S11: -0.0024 S12: -0.1396 S13: -0.0618
REMARK 3 S21: 0.1533 S22: 0.0086 S23: 0.0130
REMARK 3 S31: -0.1859 S32: 0.4803 S33: -0.0062
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 12.0217 2.5311 60.4050
REMARK 3 T TENSOR
REMARK 3 T11: 0.0055 T22: -0.0401
REMARK 3 T33: -0.0941 T12: 0.0056
REMARK 3 T13: -0.0304 T23: -0.0105
REMARK 3 L TENSOR
REMARK 3 L11: 0.0347 L22: 0.1325
REMARK 3 L33: 13.7312 L12: 0.0058
REMARK 3 L13: 0.3737 L23: 1.2768
REMARK 3 S TENSOR
REMARK 3 S11: 0.0330 S12: -0.1771 S13: 0.0005
REMARK 3 S21: 0.1166 S22: -0.0213 S23: -0.0896
REMARK 3 S31: -0.3861 S32: -0.4733 S33: -0.0118
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6EUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-17.
REMARK 100 THE DEPOSITION ID IS D_1200007275.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 08-OCT-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : MASSIF-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.966
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18251
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650
REMARK 200 RESOLUTION RANGE LOW (A) : 63.650
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1
REMARK 200 DATA REDUNDANCY : 2.700
REMARK 200 R MERGE (I) : 0.08000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79
REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.40100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.54
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM PHOSPHATE CITRATE PH 3.9,
REMARK 280 5% (W/V) PEG 1K, 33.6-45.9% (V/V) MPD, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.45950
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.87500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.45950
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.87500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 18750 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 24270 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 24
REMARK 465 THR A 25
REMARK 465 ASN A 26
REMARK 465 ASP A 27
REMARK 465 HIS A 175
REMARK 465 HIS A 176
REMARK 465 HIS A 177
REMARK 465 HIS A 178
REMARK 465 HIS A 179
REMARK 465 ALA B 24
REMARK 465 THR B 25
REMARK 465 ASN B 26
REMARK 465 ASP B 27
REMARK 465 HIS B 175
REMARK 465 HIS B 176
REMARK 465 HIS B 177
REMARK 465 HIS B 178
REMARK 465 HIS B 179
REMARK 465 ALA C 24
REMARK 465 THR C 25
REMARK 465 ASN C 26
REMARK 465 ASP C 27
REMARK 465 HIS C 175
REMARK 465 HIS C 176
REMARK 465 HIS C 177
REMARK 465 HIS C 178
REMARK 465 HIS C 179
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 78 57.62 -105.02
REMARK 500 ALA B 78 58.86 -104.58
REMARK 500 ALA C 78 59.33 -104.71
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 208
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 209
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 208
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 209
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 210
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 208
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 209
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 210
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6EUN RELATED DB: PDB
DBREF 6EUP A 24 170 UNP Q8KH85 Q8KH85_NEIME 24 170
DBREF 6EUP B 24 170 UNP Q8KH85 Q8KH85_NEIME 24 170
DBREF 6EUP C 24 170 UNP Q8KH85 Q8KH85_NEIME 24 170
SEQADV 6EUP ILE A 33 UNP Q8KH85 ALA 33 ENGINEERED MUTATION
SEQADV 6EUP LEU A 38 UNP Q8KH85 ILE 38 ENGINEERED MUTATION
SEQADV 6EUP ALA A 171 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP SER A 172 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP LYS A 173 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS A 174 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS A 175 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS A 176 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS A 177 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS A 178 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS A 179 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP ILE B 33 UNP Q8KH85 ALA 33 ENGINEERED MUTATION
SEQADV 6EUP LEU B 38 UNP Q8KH85 ILE 38 ENGINEERED MUTATION
SEQADV 6EUP ALA B 171 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP SER B 172 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP LYS B 173 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS B 174 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS B 175 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS B 176 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS B 177 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS B 178 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS B 179 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP ILE C 33 UNP Q8KH85 ALA 33 ENGINEERED MUTATION
SEQADV 6EUP LEU C 38 UNP Q8KH85 ILE 38 ENGINEERED MUTATION
SEQADV 6EUP ALA C 171 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP SER C 172 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP LYS C 173 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS C 174 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS C 175 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS C 176 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS C 177 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS C 178 UNP Q8KH85 EXPRESSION TAG
SEQADV 6EUP HIS C 179 UNP Q8KH85 EXPRESSION TAG
SEQRES 1 A 156 ALA THR ASN ASP ASP ASP VAL LYS LYS ILE ALA THR VAL
SEQRES 2 A 156 ALA LEU ALA ALA ALA TYR ASN ASN GLY GLN GLU ILE ASN
SEQRES 3 A 156 GLY PHE LYS ALA GLY GLU THR ILE TYR ASP ILE ASP GLU
SEQRES 4 A 156 ASP GLY THR ILE THR LYS LYS ASP ALA THR ALA ALA ASP
SEQRES 5 A 156 VAL GLU ALA ASP ASP PHE LYS GLY LEU GLY LEU LYS LYS
SEQRES 6 A 156 VAL VAL THR ASN LEU THR LYS THR VAL ASN GLU ASN LYS
SEQRES 7 A 156 GLN ASN VAL ASP ALA LYS VAL LYS ALA ALA GLU SER GLU
SEQRES 8 A 156 ILE GLU LYS LEU THR THR LYS LEU ALA ASP THR ASP ALA
SEQRES 9 A 156 ALA LEU ALA ASP THR ASP ALA ALA LEU ASP ALA THR THR
SEQRES 10 A 156 ASN ALA LEU ASN LYS LEU GLY GLU ASN ILE THR THR PHE
SEQRES 11 A 156 ALA GLU GLU THR LYS THR ASN ILE VAL LYS ILE ASP GLU
SEQRES 12 A 156 LYS LEU GLU ALA ALA SER LYS HIS HIS HIS HIS HIS HIS
SEQRES 1 B 156 ALA THR ASN ASP ASP ASP VAL LYS LYS ILE ALA THR VAL
SEQRES 2 B 156 ALA LEU ALA ALA ALA TYR ASN ASN GLY GLN GLU ILE ASN
SEQRES 3 B 156 GLY PHE LYS ALA GLY GLU THR ILE TYR ASP ILE ASP GLU
SEQRES 4 B 156 ASP GLY THR ILE THR LYS LYS ASP ALA THR ALA ALA ASP
SEQRES 5 B 156 VAL GLU ALA ASP ASP PHE LYS GLY LEU GLY LEU LYS LYS
SEQRES 6 B 156 VAL VAL THR ASN LEU THR LYS THR VAL ASN GLU ASN LYS
SEQRES 7 B 156 GLN ASN VAL ASP ALA LYS VAL LYS ALA ALA GLU SER GLU
SEQRES 8 B 156 ILE GLU LYS LEU THR THR LYS LEU ALA ASP THR ASP ALA
SEQRES 9 B 156 ALA LEU ALA ASP THR ASP ALA ALA LEU ASP ALA THR THR
SEQRES 10 B 156 ASN ALA LEU ASN LYS LEU GLY GLU ASN ILE THR THR PHE
SEQRES 11 B 156 ALA GLU GLU THR LYS THR ASN ILE VAL LYS ILE ASP GLU
SEQRES 12 B 156 LYS LEU GLU ALA ALA SER LYS HIS HIS HIS HIS HIS HIS
SEQRES 1 C 156 ALA THR ASN ASP ASP ASP VAL LYS LYS ILE ALA THR VAL
SEQRES 2 C 156 ALA LEU ALA ALA ALA TYR ASN ASN GLY GLN GLU ILE ASN
SEQRES 3 C 156 GLY PHE LYS ALA GLY GLU THR ILE TYR ASP ILE ASP GLU
SEQRES 4 C 156 ASP GLY THR ILE THR LYS LYS ASP ALA THR ALA ALA ASP
SEQRES 5 C 156 VAL GLU ALA ASP ASP PHE LYS GLY LEU GLY LEU LYS LYS
SEQRES 6 C 156 VAL VAL THR ASN LEU THR LYS THR VAL ASN GLU ASN LYS
SEQRES 7 C 156 GLN ASN VAL ASP ALA LYS VAL LYS ALA ALA GLU SER GLU
SEQRES 8 C 156 ILE GLU LYS LEU THR THR LYS LEU ALA ASP THR ASP ALA
SEQRES 9 C 156 ALA LEU ALA ASP THR ASP ALA ALA LEU ASP ALA THR THR
SEQRES 10 C 156 ASN ALA LEU ASN LYS LEU GLY GLU ASN ILE THR THR PHE
SEQRES 11 C 156 ALA GLU GLU THR LYS THR ASN ILE VAL LYS ILE ASP GLU
SEQRES 12 C 156 LYS LEU GLU ALA ALA SER LYS HIS HIS HIS HIS HIS HIS
HET CL A 201 1
HET EDO A 202 4
HET EDO A 203 4
HET EDO A 204 4
HET EDO A 205 4
HET EDO A 206 4
HET EDO A 207 4
HET MPD A 208 8
HET MPD A 209 8
HET EDO B 201 4
HET EDO B 202 4
HET EDO B 203 4
HET EDO B 204 4
HET EDO B 205 4
HET MPD B 206 8
HET P6G B 207 19
HET P6G B 208 19
HET PO4 B 209 5
HET PO4 B 210 5
HET EDO C 201 4
HET EDO C 202 4
HET EDO C 203 4
HET EDO C 204 4
HET EDO C 205 4
HET EDO C 206 4
HET EDO C 207 4
HET MPD C 208 8
HET MPD C 209 8
HET PO4 C 210 5
HETNAM CL CHLORIDE ION
HETNAM EDO 1,2-ETHANEDIOL
HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL
HETNAM P6G HEXAETHYLENE GLYCOL
HETNAM PO4 PHOSPHATE ION
HETSYN EDO ETHYLENE GLYCOL
HETSYN P6G POLYETHYLENE GLYCOL PEG400
FORMUL 4 CL CL 1-
FORMUL 5 EDO 18(C2 H6 O2)
FORMUL 11 MPD 5(C6 H14 O2)
FORMUL 19 P6G 2(C12 H26 O7)
FORMUL 21 PO4 3(O4 P 3-)
FORMUL 33 HOH *53(H2 O)
HELIX 1 AA1 ASP A 28 GLY A 50 1 23
HELIX 2 AA2 THR A 72 ALA A 78 1 7
HELIX 3 AA3 GLY A 85 LYS A 173 1 89
HELIX 4 AA4 ASP B 29 GLY B 50 1 22
HELIX 5 AA5 THR B 72 ALA B 78 1 7
HELIX 6 AA6 LEU B 84 LYS B 173 1 90
HELIX 7 AA7 ASP C 29 GLY C 50 1 22
HELIX 8 AA8 THR C 72 ALA C 78 1 7
HELIX 9 AA9 GLY C 85 LYS C 173 1 89
SHEET 1 AA1 2 THR A 56 ILE A 60 0
SHEET 2 AA1 2 ILE A 66 ASP A 70 -1 O LYS A 69 N ILE A 57
SHEET 1 AA2 2 THR B 56 ILE B 60 0
SHEET 2 AA2 2 ILE B 66 ASP B 70 -1 O LYS B 69 N ILE B 57
SHEET 1 AA3 2 THR C 56 ILE C 60 0
SHEET 2 AA3 2 ILE C 66 ASP C 70 -1 O LYS C 69 N ILE C 57
SITE 1 AC1 6 ALA A 41 ASN A 44 ALA B 41 ASN B 44
SITE 2 AC1 6 ALA C 41 ASN C 44
SITE 1 AC2 2 LEU A 136 EDO A 206
SITE 1 AC3 4 ASN A 49 GLY A 50 LYS A 52 GLU A 55
SITE 1 AC4 1 LYS B 121
SITE 1 AC5 2 EDO A 202 GLU C 166
SITE 1 AC6 8 GLU A 148 THR A 151 THR A 152 GLU A 155
SITE 2 AC6 8 GLU C 148 THR C 151 THR C 152 GLU C 155
SITE 1 AC7 5 PHE A 153 GLU A 156 THR A 157 ASN A 160
SITE 2 AC7 5 ILE C 161
SITE 1 AC8 5 ASN A 149 HOH A 310 THR C 151 EDO C 204
SITE 2 AC8 5 MPD C 209
SITE 1 AC9 1 ASP B 126
SITE 1 AD1 1 ASP B 137
SITE 1 AD2 2 ALA B 154 MPD C 208
SITE 1 AD3 3 ILE A 161 THR B 157 ASN B 160
SITE 1 AD4 2 ASN B 149 P6G B 207
SITE 1 AD5 5 ASN B 144 GLY B 147 GLU B 148 GLU B 155
SITE 2 AD5 5 EDO C 203
SITE 1 AD6 9 ASN A 144 GLY A 147 THR A 151 ALA B 142
SITE 2 AD6 9 LYS B 145 LEU B 146 ASN B 149 EDO B 205
SITE 3 AD6 9 GLU C 155
SITE 1 AD7 6 ASP B 131 ALA B 134 ASP B 137 ALA B 138
SITE 2 AD7 6 ASN B 141 ALA B 142
SITE 1 AD8 2 ASN B 144 ALA C 142
SITE 1 AD9 2 ASN A 144 ALA B 142
SITE 1 AE1 1 LYS A 121
SITE 1 AE2 5 MPD B 206 ALA C 142 LEU C 146 ASN C 149
SITE 2 AE2 5 MPD C 208
SITE 1 AE3 3 MPD A 209 LYS C 158 HOH C 305
SITE 1 AE4 5 ILE B 161 PHE C 153 GLU C 156 THR C 157
SITE 2 AE4 5 ASN C 160
SITE 1 AE5 1 ASP C 131
SITE 1 AE6 5 THR B 151 EDO B 203 LEU C 146 ASN C 149
SITE 2 AE6 5 EDO C 203
SITE 1 AE7 4 GLU A 155 MPD A 209 HOH A 309 ASN C 144
SITE 1 AE8 4 THR C 140 ASN C 144 HOH C 302 HOH C 303
CRYST1 68.919 39.750 255.630 90.00 95.13 90.00 C 1 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014510 0.000000 0.001303 0.00000
SCALE2 0.000000 0.025157 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003928 0.00000