HEADER CELL ADHESION 31-OCT-17 6EUP TITLE CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS NADA VARIANT 3 DOUBLE TITLE 2 MUTANT A33I-I38L COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESIN A; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NADA AUTOTRANSPORTER,PUTATIVE ADHESIN/INVASIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: NADA, NADA_1, ERS040961_00445; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIMERIC AUTOTRANSPORTER ADHESIN, ANTIGEN, DOUBLE MUTANT, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR L.DELLO IACONO,A.LIGUORI,E.MALITO,M.J.BOTTOMLEY REVDAT 3 08-MAY-24 6EUP 1 REMARK REVDAT 2 31-OCT-18 6EUP 1 JRNL REVDAT 1 10-OCT-18 6EUP 0 JRNL AUTH A.LIGUORI,L.DELLO IACONO,G.MARUGGI,B.BENUCCI,M.MEROLA, JRNL AUTH 2 P.LO SURDO,J.LOPEZ-SAGASETA,M.PIZZA,E.MALITO,M.J.BOTTOMLEY JRNL TITL NADA3 STRUCTURES REVEAL UNDECAD COILED COILS AND LOX1 JRNL TITL 2 BINDING REGIONS COMPETED BY MENINGOCOCCUS B VACCINE-ELICITED JRNL TITL 3 HUMAN ANTIBODIES. JRNL REF MBIO V. 9 2018 JRNL REFN ESSN 2150-7511 JRNL PMID 30327444 JRNL DOI 10.1128/MBIO.01914-18 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 18248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.450 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.23 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2689 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2190 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2549 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.21 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.66670 REMARK 3 B22 (A**2) : -9.54710 REMARK 3 B33 (A**2) : 19.21380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.91690 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.486 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.279 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.499 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.285 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3446 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4611 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1256 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 126 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 456 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3446 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 506 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3855 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.8481 -1.2145 60.3887 REMARK 3 T TENSOR REMARK 3 T11: -0.0606 T22: 0.0724 REMARK 3 T33: -0.0909 T12: -0.0651 REMARK 3 T13: -0.0109 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1576 L22: 0.0040 REMARK 3 L33: 12.5718 L12: 0.0669 REMARK 3 L13: -1.4420 L23: -0.4449 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: -0.1744 S13: 0.0511 REMARK 3 S21: 0.0976 S22: 0.0327 S23: 0.0279 REMARK 3 S31: 0.4957 S32: -0.0267 S33: -0.0675 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 13.6814 -2.0940 60.3863 REMARK 3 T TENSOR REMARK 3 T11: -0.1124 T22: 0.0715 REMARK 3 T33: -0.0830 T12: 0.0578 REMARK 3 T13: -0.0420 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.1475 L22: 0.0746 REMARK 3 L33: 10.9130 L12: -0.0332 REMARK 3 L13: 0.9408 L23: -0.6272 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.1396 S13: -0.0618 REMARK 3 S21: 0.1533 S22: 0.0086 S23: 0.0130 REMARK 3 S31: -0.1859 S32: 0.4803 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.0217 2.5311 60.4050 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: -0.0401 REMARK 3 T33: -0.0941 T12: 0.0056 REMARK 3 T13: -0.0304 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0347 L22: 0.1325 REMARK 3 L33: 13.7312 L12: 0.0058 REMARK 3 L13: 0.3737 L23: 1.2768 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.1771 S13: 0.0005 REMARK 3 S21: 0.1166 S22: -0.0213 S23: -0.0896 REMARK 3 S31: -0.3861 S32: -0.4733 S33: -0.0118 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 63.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM PHOSPHATE CITRATE PH 3.9, REMARK 280 5% (W/V) PEG 1K, 33.6-45.9% (V/V) MPD, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.45950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.45950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 24 REMARK 465 THR A 25 REMARK 465 ASN A 26 REMARK 465 ASP A 27 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 ALA B 24 REMARK 465 THR B 25 REMARK 465 ASN B 26 REMARK 465 ASP B 27 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 ALA C 24 REMARK 465 THR C 25 REMARK 465 ASN C 26 REMARK 465 ASP C 27 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 HIS C 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 57.62 -105.02 REMARK 500 ALA B 78 58.86 -104.58 REMARK 500 ALA C 78 59.33 -104.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EUN RELATED DB: PDB DBREF 6EUP A 24 170 UNP Q8KH85 Q8KH85_NEIME 24 170 DBREF 6EUP B 24 170 UNP Q8KH85 Q8KH85_NEIME 24 170 DBREF 6EUP C 24 170 UNP Q8KH85 Q8KH85_NEIME 24 170 SEQADV 6EUP ILE A 33 UNP Q8KH85 ALA 33 ENGINEERED MUTATION SEQADV 6EUP LEU A 38 UNP Q8KH85 ILE 38 ENGINEERED MUTATION SEQADV 6EUP ALA A 171 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP SER A 172 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP LYS A 173 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS A 174 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS A 175 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS A 176 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS A 177 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS A 178 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS A 179 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP ILE B 33 UNP Q8KH85 ALA 33 ENGINEERED MUTATION SEQADV 6EUP LEU B 38 UNP Q8KH85 ILE 38 ENGINEERED MUTATION SEQADV 6EUP ALA B 171 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP SER B 172 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP LYS B 173 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS B 174 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS B 175 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS B 176 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS B 177 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS B 178 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS B 179 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP ILE C 33 UNP Q8KH85 ALA 33 ENGINEERED MUTATION SEQADV 6EUP LEU C 38 UNP Q8KH85 ILE 38 ENGINEERED MUTATION SEQADV 6EUP ALA C 171 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP SER C 172 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP LYS C 173 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS C 174 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS C 175 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS C 176 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS C 177 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS C 178 UNP Q8KH85 EXPRESSION TAG SEQADV 6EUP HIS C 179 UNP Q8KH85 EXPRESSION TAG SEQRES 1 A 156 ALA THR ASN ASP ASP ASP VAL LYS LYS ILE ALA THR VAL SEQRES 2 A 156 ALA LEU ALA ALA ALA TYR ASN ASN GLY GLN GLU ILE ASN SEQRES 3 A 156 GLY PHE LYS ALA GLY GLU THR ILE TYR ASP ILE ASP GLU SEQRES 4 A 156 ASP GLY THR ILE THR LYS LYS ASP ALA THR ALA ALA ASP SEQRES 5 A 156 VAL GLU ALA ASP ASP PHE LYS GLY LEU GLY LEU LYS LYS SEQRES 6 A 156 VAL VAL THR ASN LEU THR LYS THR VAL ASN GLU ASN LYS SEQRES 7 A 156 GLN ASN VAL ASP ALA LYS VAL LYS ALA ALA GLU SER GLU SEQRES 8 A 156 ILE GLU LYS LEU THR THR LYS LEU ALA ASP THR ASP ALA SEQRES 9 A 156 ALA LEU ALA ASP THR ASP ALA ALA LEU ASP ALA THR THR SEQRES 10 A 156 ASN ALA LEU ASN LYS LEU GLY GLU ASN ILE THR THR PHE SEQRES 11 A 156 ALA GLU GLU THR LYS THR ASN ILE VAL LYS ILE ASP GLU SEQRES 12 A 156 LYS LEU GLU ALA ALA SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 156 ALA THR ASN ASP ASP ASP VAL LYS LYS ILE ALA THR VAL SEQRES 2 B 156 ALA LEU ALA ALA ALA TYR ASN ASN GLY GLN GLU ILE ASN SEQRES 3 B 156 GLY PHE LYS ALA GLY GLU THR ILE TYR ASP ILE ASP GLU SEQRES 4 B 156 ASP GLY THR ILE THR LYS LYS ASP ALA THR ALA ALA ASP SEQRES 5 B 156 VAL GLU ALA ASP ASP PHE LYS GLY LEU GLY LEU LYS LYS SEQRES 6 B 156 VAL VAL THR ASN LEU THR LYS THR VAL ASN GLU ASN LYS SEQRES 7 B 156 GLN ASN VAL ASP ALA LYS VAL LYS ALA ALA GLU SER GLU SEQRES 8 B 156 ILE GLU LYS LEU THR THR LYS LEU ALA ASP THR ASP ALA SEQRES 9 B 156 ALA LEU ALA ASP THR ASP ALA ALA LEU ASP ALA THR THR SEQRES 10 B 156 ASN ALA LEU ASN LYS LEU GLY GLU ASN ILE THR THR PHE SEQRES 11 B 156 ALA GLU GLU THR LYS THR ASN ILE VAL LYS ILE ASP GLU SEQRES 12 B 156 LYS LEU GLU ALA ALA SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 156 ALA THR ASN ASP ASP ASP VAL LYS LYS ILE ALA THR VAL SEQRES 2 C 156 ALA LEU ALA ALA ALA TYR ASN ASN GLY GLN GLU ILE ASN SEQRES 3 C 156 GLY PHE LYS ALA GLY GLU THR ILE TYR ASP ILE ASP GLU SEQRES 4 C 156 ASP GLY THR ILE THR LYS LYS ASP ALA THR ALA ALA ASP SEQRES 5 C 156 VAL GLU ALA ASP ASP PHE LYS GLY LEU GLY LEU LYS LYS SEQRES 6 C 156 VAL VAL THR ASN LEU THR LYS THR VAL ASN GLU ASN LYS SEQRES 7 C 156 GLN ASN VAL ASP ALA LYS VAL LYS ALA ALA GLU SER GLU SEQRES 8 C 156 ILE GLU LYS LEU THR THR LYS LEU ALA ASP THR ASP ALA SEQRES 9 C 156 ALA LEU ALA ASP THR ASP ALA ALA LEU ASP ALA THR THR SEQRES 10 C 156 ASN ALA LEU ASN LYS LEU GLY GLU ASN ILE THR THR PHE SEQRES 11 C 156 ALA GLU GLU THR LYS THR ASN ILE VAL LYS ILE ASP GLU SEQRES 12 C 156 LYS LEU GLU ALA ALA SER LYS HIS HIS HIS HIS HIS HIS HET CL A 201 1 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET MPD A 208 8 HET MPD A 209 8 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET MPD B 206 8 HET P6G B 207 19 HET P6G B 208 19 HET PO4 B 209 5 HET PO4 B 210 5 HET EDO C 201 4 HET EDO C 202 4 HET EDO C 203 4 HET EDO C 204 4 HET EDO C 205 4 HET EDO C 206 4 HET EDO C 207 4 HET MPD C 208 8 HET MPD C 209 8 HET PO4 C 210 5 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 4 CL CL 1- FORMUL 5 EDO 18(C2 H6 O2) FORMUL 11 MPD 5(C6 H14 O2) FORMUL 19 P6G 2(C12 H26 O7) FORMUL 21 PO4 3(O4 P 3-) FORMUL 33 HOH *53(H2 O) HELIX 1 AA1 ASP A 28 GLY A 50 1 23 HELIX 2 AA2 THR A 72 ALA A 78 1 7 HELIX 3 AA3 GLY A 85 LYS A 173 1 89 HELIX 4 AA4 ASP B 29 GLY B 50 1 22 HELIX 5 AA5 THR B 72 ALA B 78 1 7 HELIX 6 AA6 LEU B 84 LYS B 173 1 90 HELIX 7 AA7 ASP C 29 GLY C 50 1 22 HELIX 8 AA8 THR C 72 ALA C 78 1 7 HELIX 9 AA9 GLY C 85 LYS C 173 1 89 SHEET 1 AA1 2 THR A 56 ILE A 60 0 SHEET 2 AA1 2 ILE A 66 ASP A 70 -1 O LYS A 69 N ILE A 57 SHEET 1 AA2 2 THR B 56 ILE B 60 0 SHEET 2 AA2 2 ILE B 66 ASP B 70 -1 O LYS B 69 N ILE B 57 SHEET 1 AA3 2 THR C 56 ILE C 60 0 SHEET 2 AA3 2 ILE C 66 ASP C 70 -1 O LYS C 69 N ILE C 57 SITE 1 AC1 6 ALA A 41 ASN A 44 ALA B 41 ASN B 44 SITE 2 AC1 6 ALA C 41 ASN C 44 SITE 1 AC2 2 LEU A 136 EDO A 206 SITE 1 AC3 4 ASN A 49 GLY A 50 LYS A 52 GLU A 55 SITE 1 AC4 1 LYS B 121 SITE 1 AC5 2 EDO A 202 GLU C 166 SITE 1 AC6 8 GLU A 148 THR A 151 THR A 152 GLU A 155 SITE 2 AC6 8 GLU C 148 THR C 151 THR C 152 GLU C 155 SITE 1 AC7 5 PHE A 153 GLU A 156 THR A 157 ASN A 160 SITE 2 AC7 5 ILE C 161 SITE 1 AC8 5 ASN A 149 HOH A 310 THR C 151 EDO C 204 SITE 2 AC8 5 MPD C 209 SITE 1 AC9 1 ASP B 126 SITE 1 AD1 1 ASP B 137 SITE 1 AD2 2 ALA B 154 MPD C 208 SITE 1 AD3 3 ILE A 161 THR B 157 ASN B 160 SITE 1 AD4 2 ASN B 149 P6G B 207 SITE 1 AD5 5 ASN B 144 GLY B 147 GLU B 148 GLU B 155 SITE 2 AD5 5 EDO C 203 SITE 1 AD6 9 ASN A 144 GLY A 147 THR A 151 ALA B 142 SITE 2 AD6 9 LYS B 145 LEU B 146 ASN B 149 EDO B 205 SITE 3 AD6 9 GLU C 155 SITE 1 AD7 6 ASP B 131 ALA B 134 ASP B 137 ALA B 138 SITE 2 AD7 6 ASN B 141 ALA B 142 SITE 1 AD8 2 ASN B 144 ALA C 142 SITE 1 AD9 2 ASN A 144 ALA B 142 SITE 1 AE1 1 LYS A 121 SITE 1 AE2 5 MPD B 206 ALA C 142 LEU C 146 ASN C 149 SITE 2 AE2 5 MPD C 208 SITE 1 AE3 3 MPD A 209 LYS C 158 HOH C 305 SITE 1 AE4 5 ILE B 161 PHE C 153 GLU C 156 THR C 157 SITE 2 AE4 5 ASN C 160 SITE 1 AE5 1 ASP C 131 SITE 1 AE6 5 THR B 151 EDO B 203 LEU C 146 ASN C 149 SITE 2 AE6 5 EDO C 203 SITE 1 AE7 4 GLU A 155 MPD A 209 HOH A 309 ASN C 144 SITE 1 AE8 4 THR C 140 ASN C 144 HOH C 302 HOH C 303 CRYST1 68.919 39.750 255.630 90.00 95.13 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014510 0.000000 0.001303 0.00000 SCALE2 0.000000 0.025157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003928 0.00000