HEADER LYASE 01-NOV-17 6EVA TITLE STRUCTURE OF E277Q A. NIGER FDC1 IN COMPLEX WITH A PHENYLPYRUVATE TITLE 2 DERIVED ADDUCT TO THE PRENYLATED FLAVIN COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERULIC ACID DECARBOXYLASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHENACRYLATE DECARBOXYLASE; COMPND 5 EC: 4.1.1.102; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 GENE: FDC1, AN03G06590; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.S.BAILEY,L.DAVID,K.A.P.PAYNE REVDAT 6 17-JAN-24 6EVA 1 COMPND HETNAM LINK REVDAT 5 28-FEB-18 6EVA 1 JRNL REVDAT 4 31-JAN-18 6EVA 1 REMARK REVDAT 3 03-JAN-18 6EVA 1 JRNL REVDAT 2 27-DEC-17 6EVA 1 JRNL REVDAT 1 20-DEC-17 6EVA 0 JRNL AUTH S.S.BAILEY,K.A.P.PAYNE,K.FISHER,S.A.MARSHALL,M.J.CLIFF, JRNL AUTH 2 R.SPIESS,D.A.PARKER,S.E.J.RIGBY,D.LEYS JRNL TITL THE ROLE OF CONSERVED RESIDUES IN FDC DECARBOXYLASE IN JRNL TITL 2 PRENYLATED FLAVIN MONONUCLEOTIDE OXIDATIVE MATURATION, JRNL TITL 3 COFACTOR ISOMERIZATION, AND CATALYSIS. JRNL REF J. BIOL. CHEM. V. 293 2272 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29259125 JRNL DOI 10.1074/JBC.RA117.000881 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3376 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4642 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.638 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4280 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3891 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5873 ; 2.127 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9077 ; 1.185 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 6.408 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.560 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;12.090 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4913 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 855 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2161 ; 1.497 ; 1.413 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2159 ; 1.493 ; 1.414 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2749 ; 2.075 ; 2.113 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2748 ; 2.070 ; 2.115 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 2.583 ; 1.646 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2120 ; 2.582 ; 1.646 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3125 ; 3.730 ; 2.371 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4962 ; 6.523 ;18.302 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4963 ; 6.522 ;18.301 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 53.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZA4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, BIS-TRIS REMARK 280 PROPANE PH 6.5, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.13500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.13500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 500 REMARK 465 LEU A 501 REMARK 465 GLU A 502 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 75 CD CE NZ REMARK 470 ASP A 129 OD1 OD2 REMARK 470 LYS A 179 CE NZ REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 293 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 412 CE NZ REMARK 470 ARG A 470 CZ NH1 NH2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 SER A 499 CB OG REMARK 470 HIS A 506 C O CB CG ND1 CD2 CE1 REMARK 470 HIS A 506 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 706 O HOH A 1097 1.55 REMARK 500 O HOH A 793 O HOH A 948 1.60 REMARK 500 O HOH A 793 O HOH A 967 1.71 REMARK 500 O HOH A 901 O HOH A 1014 1.85 REMARK 500 O HOH A 866 O HOH A 1027 2.05 REMARK 500 O HOH A 981 O HOH A 1152 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 894 O HOH A 894 2655 0.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 65 CZ ARG A 65 NH1 -0.118 REMARK 500 GLU A 202 CD GLU A 202 OE2 0.069 REMARK 500 CYS A 316 CA CYS A 316 CB -0.079 REMARK 500 GLU A 377 CD GLU A 377 OE1 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 31 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 163 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 229 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 363 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 363 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 380 CG - CD - NE ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP A 404 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 404 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 435 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 435 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 LEU A 439 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 452 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 452 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 484 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 34 -40.14 73.39 REMARK 500 TYR A 154 19.49 -149.70 REMARK 500 ASP A 178 -166.32 -160.15 REMARK 500 ASN A 180 26.95 -141.95 REMARK 500 ASP A 291 73.45 -106.30 REMARK 500 ASP A 433 51.69 -113.90 REMARK 500 MET A 443 -72.36 -91.31 REMARK 500 THR A 467 -83.14 -121.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 290 ASP A 291 -138.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1255 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 168 OD1 REMARK 620 2 HIS A 191 ND1 89.3 REMARK 620 3 GLU A 233 OE2 97.5 172.9 REMARK 620 4 4MJ A 604 O2 94.2 90.3 91.3 REMARK 620 5 HOH A 737 O 175.6 86.8 86.6 83.8 REMARK 620 6 HOH A 837 O 90.0 86.2 91.7 174.5 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 602 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 169 O REMARK 620 2 ALA A 222 O 97.1 REMARK 620 3 SER A 223 O 75.3 75.4 REMARK 620 4 MET A 225 O 170.1 73.1 102.3 REMARK 620 5 GLU A 233 OE2 69.7 107.1 145.0 111.9 REMARK 620 6 4MJ A 604 O2 79.7 173.4 109.1 110.0 66.3 REMARK 620 7 4MJ A 604 O4 95.0 137.2 68.3 92.9 115.6 49.3 REMARK 620 8 HOH A 737 O 120.4 121.9 151.1 66.1 57.3 56.2 85.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 421 O REMARK 620 2 ASP A 427 OD2 84.3 REMARK 620 3 ASP A 459 O 85.7 97.4 REMARK 620 4 LEU A 461 O 105.6 160.6 99.9 REMARK 620 5 HOH A 706 O 47.5 73.7 132.4 100.4 REMARK 620 6 HOH A 793 O 164.7 110.0 97.2 59.1 130.0 REMARK 620 7 HOH A 967 O 159.0 77.8 86.0 94.7 134.1 36.1 REMARK 620 8 HOH A1097 O 75.7 78.5 161.2 87.7 28.7 101.5 110.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4MJ A 604 DBREF 6EVA A 1 500 UNP A2QHE5 FDC1_ASPNC 1 500 SEQADV 6EVA GLN A 277 UNP A2QHE5 GLU 277 ENGINEERED MUTATION SEQADV 6EVA LEU A 501 UNP A2QHE5 EXPRESSION TAG SEQADV 6EVA GLU A 502 UNP A2QHE5 EXPRESSION TAG SEQADV 6EVA HIS A 503 UNP A2QHE5 EXPRESSION TAG SEQADV 6EVA HIS A 504 UNP A2QHE5 EXPRESSION TAG SEQADV 6EVA HIS A 505 UNP A2QHE5 EXPRESSION TAG SEQADV 6EVA HIS A 506 UNP A2QHE5 EXPRESSION TAG SEQADV 6EVA HIS A 507 UNP A2QHE5 EXPRESSION TAG SEQADV 6EVA HIS A 508 UNP A2QHE5 EXPRESSION TAG SEQRES 1 A 508 MET SER ALA GLN PRO ALA HIS LEU CYS PHE ARG SER PHE SEQRES 2 A 508 VAL GLU ALA LEU LYS VAL ASP ASN ASP LEU VAL GLU ILE SEQRES 3 A 508 ASN THR PRO ILE ASP PRO ASN LEU GLU ALA ALA ALA ILE SEQRES 4 A 508 THR ARG ARG VAL CYS GLU THR ASN ASP LYS ALA PRO LEU SEQRES 5 A 508 PHE ASN ASN LEU ILE GLY MET LYS ASN GLY LEU PHE ARG SEQRES 6 A 508 ILE LEU GLY ALA PRO GLY SER LEU ARG LYS SER SER ALA SEQRES 7 A 508 ASP ARG TYR GLY ARG LEU ALA ARG HIS LEU ALA LEU PRO SEQRES 8 A 508 PRO THR ALA SER MET ARG GLU ILE LEU ASP LYS MET LEU SEQRES 9 A 508 SER ALA SER ASP MET PRO PRO ILE PRO PRO THR ILE VAL SEQRES 10 A 508 PRO THR GLY PRO CYS LYS GLU ASN SER LEU ASP ASP SER SEQRES 11 A 508 GLU PHE ASP LEU THR GLU LEU PRO VAL PRO LEU ILE HIS SEQRES 12 A 508 LYS SER ASP GLY GLY LYS TYR ILE GLN THR TYR GLY MET SEQRES 13 A 508 HIS ILE VAL GLN SER PRO ASP GLY THR TRP THR ASN TRP SEQRES 14 A 508 SER ILE ALA ARG ALA MET VAL HIS ASP LYS ASN HIS LEU SEQRES 15 A 508 THR GLY LEU VAL ILE PRO PRO GLN HIS ILE TRP GLN ILE SEQRES 16 A 508 HIS GLN MET TRP LYS LYS GLU GLY ARG SER ASP VAL PRO SEQRES 17 A 508 TRP ALA LEU ALA PHE GLY VAL PRO PRO ALA ALA ILE MET SEQRES 18 A 508 ALA SER SER MET PRO ILE PRO ASP GLY VAL THR GLU ALA SEQRES 19 A 508 GLY TYR VAL GLY ALA MET THR GLY SER SER LEU GLU LEU SEQRES 20 A 508 VAL LYS CYS ASP THR ASN ASP LEU TYR VAL PRO ALA THR SEQRES 21 A 508 SER GLU ILE VAL LEU GLU GLY THR LEU SER ILE SER GLU SEQRES 22 A 508 THR GLY PRO GLN GLY PRO PHE GLY GLU MET HIS GLY TYR SEQRES 23 A 508 ILE PHE PRO GLY ASP THR HIS LEU GLY ALA LYS TYR LYS SEQRES 24 A 508 VAL ASN ARG ILE THR TYR ARG ASN ASN ALA ILE MET PRO SEQRES 25 A 508 MET SER SER CYS GLY ARG LEU THR ASP GLU THR HIS THR SEQRES 26 A 508 MET ILE GLY SER LEU ALA ALA ALA GLU ILE ARG LYS LEU SEQRES 27 A 508 CYS GLN GLN ASN ASP LEU PRO ILE THR ASP ALA PHE ALA SEQRES 28 A 508 PRO PHE GLU SER GLN VAL THR TRP VAL ALA LEU ARG VAL SEQRES 29 A 508 ASP THR GLU LYS LEU ARG ALA MET LYS THR THR SER GLU SEQRES 30 A 508 GLY PHE ARG LYS ARG VAL GLY ASP VAL VAL PHE ASN HIS SEQRES 31 A 508 LYS ALA GLY TYR THR ILE HIS ARG LEU VAL LEU VAL GLY SEQRES 32 A 508 ASP ASP ILE ASP VAL TYR GLU GLY LYS ASP VAL LEU TRP SEQRES 33 A 508 ALA PHE SER THR ARG CYS ARG PRO GLY MET ASP GLU THR SEQRES 34 A 508 LEU PHE GLU ASP VAL ARG GLY PHE PRO LEU ILE PRO TYR SEQRES 35 A 508 MET GLY HIS GLY ASN GLY PRO ALA HIS ARG GLY GLY LYS SEQRES 36 A 508 VAL VAL SER ASP ALA LEU MET PRO THR GLU TYR THR THR SEQRES 37 A 508 GLY ARG ASN TRP GLU ALA ALA ASP PHE ASN GLN SER TYR SEQRES 38 A 508 PRO GLU ASP LEU LYS GLN LYS VAL LEU ASP ASN TRP THR SEQRES 39 A 508 LYS MET GLY PHE SER ASN LEU GLU HIS HIS HIS HIS HIS SEQRES 40 A 508 HIS HET MN A 601 1 HET K A 602 1 HET K A 603 1 HET 4MJ A 604 45 HETNAM MN MANGANESE (II) ION HETNAM K POTASSIUM ION HETNAM 4MJ 1-DEOXY-5-O-PHOSPHONO-1-[(1S)-3,3,4,5-TETRAMETHYL-9,11- HETNAM 2 4MJ DIOXO-1-(PHENYLACETYL)-2,3,8,9,10,11-HEXAHYDRO-1H,7H- HETNAM 3 4MJ QUINOLINO[1 ,8-FG]PTERIDIN-7-YL]-D-RIBITOL HETSYN 4MJ PHENYLPYRUVATE DERIVED ADDUCT TO PRENYLATED FMN HETSYN 2 4MJ COFACTOR FORMUL 2 MN MN 2+ FORMUL 3 K 2(K 1+) FORMUL 5 4MJ C30 H37 N4 O10 P FORMUL 6 HOH *555(H2 O) HELIX 1 AA1 PRO A 5 LEU A 8 5 4 HELIX 2 AA2 CYS A 9 ASP A 20 1 12 HELIX 3 AA3 LEU A 34 ASN A 47 1 14 HELIX 4 AA4 TYR A 81 ARG A 86 1 6 HELIX 5 AA5 SER A 95 ALA A 106 1 12 HELIX 6 AA6 SER A 107 MET A 109 5 3 HELIX 7 AA7 GLY A 120 GLU A 124 5 5 HELIX 8 AA8 ASP A 133 LEU A 137 5 5 HELIX 9 AA9 GLN A 190 GLY A 203 1 14 HELIX 10 AB1 PRO A 216 SER A 224 1 9 HELIX 11 AB2 THR A 232 GLY A 242 1 11 HELIX 12 AB3 ASP A 321 MET A 326 1 6 HELIX 13 AB4 MET A 326 ASN A 342 1 17 HELIX 14 AB5 PRO A 352 GLN A 356 5 5 HELIX 15 AB6 ASP A 365 LYS A 373 1 9 HELIX 16 AB7 THR A 375 ASN A 389 1 15 HELIX 17 AB8 HIS A 390 TYR A 394 5 5 HELIX 18 AB9 GLU A 410 CYS A 422 1 13 HELIX 19 AC1 ILE A 440 HIS A 445 1 6 HELIX 20 AC2 MET A 462 THR A 467 5 6 HELIX 21 AC3 PRO A 482 GLY A 497 1 16 SHEET 1 AA1 4 LEU A 23 ILE A 26 0 SHEET 2 AA1 4 ALA A 50 PHE A 53 1 O LEU A 52 N VAL A 24 SHEET 3 AA1 4 ARG A 65 GLY A 68 -1 O ILE A 66 N PHE A 53 SHEET 4 AA1 4 ILE A 310 MET A 313 1 O MET A 311 N ARG A 65 SHEET 1 AA2 3 THR A 115 ILE A 116 0 SHEET 2 AA2 3 GLU A 246 LYS A 249 1 O LEU A 247 N THR A 115 SHEET 3 AA2 3 TYR A 256 PRO A 258 -1 O VAL A 257 N VAL A 248 SHEET 1 AA3 6 ASN A 125 ASP A 128 0 SHEET 2 AA3 6 HIS A 293 TYR A 305 -1 O ILE A 303 N LEU A 127 SHEET 3 AA3 6 ILE A 263 GLN A 277 -1 N THR A 268 O LYS A 299 SHEET 4 AA3 6 VAL A 207 PHE A 213 -1 N PHE A 213 O ILE A 263 SHEET 5 AA3 6 MET A 156 GLN A 160 -1 N MET A 156 O ALA A 212 SHEET 6 AA3 6 THR A 167 SER A 170 -1 O SER A 170 N HIS A 157 SHEET 1 AA4 4 ASN A 125 ASP A 128 0 SHEET 2 AA4 4 HIS A 293 TYR A 305 -1 O ILE A 303 N LEU A 127 SHEET 3 AA4 4 HIS A 181 GLY A 184 -1 N LEU A 182 O TYR A 298 SHEET 4 AA4 4 ALA A 174 ASP A 178 -1 N MET A 175 O THR A 183 SHEET 1 AA5 5 ILE A 346 PHE A 350 0 SHEET 2 AA5 5 TRP A 359 VAL A 364 -1 O ALA A 361 N PHE A 350 SHEET 3 AA5 5 ARG A 398 VAL A 402 1 O VAL A 402 N VAL A 364 SHEET 4 AA5 5 LYS A 455 ASP A 459 1 O SER A 458 N LEU A 399 SHEET 5 AA5 5 GLU A 428 PHE A 431 -1 N PHE A 431 O LYS A 455 LINK OD1 ASN A 168 MN MN A 601 1555 1555 2.17 LINK O TRP A 169 K K A 602 1555 1555 3.06 LINK ND1 HIS A 191 MN MN A 601 1555 1555 2.30 LINK O ALA A 222 K K A 602 1555 1555 2.78 LINK O SER A 223 K K A 602 1555 1555 3.14 LINK O MET A 225 K K A 602 1555 1555 2.79 LINK OE2 GLU A 233 MN MN A 601 1555 1555 2.10 LINK OE2 GLU A 233 K K A 602 1555 1555 2.76 LINK O ARG A 421 K K A 603 1555 1555 2.68 LINK OD2 ASP A 427 K K A 603 1555 1555 2.79 LINK O ASP A 459 K K A 603 1555 1555 2.72 LINK O LEU A 461 K K A 603 1555 1555 2.63 LINK MN MN A 601 O2 4MJ A 604 1555 1555 2.18 LINK MN MN A 601 O HOH A 737 1555 1555 2.17 LINK MN MN A 601 O HOH A 837 1555 1555 2.23 LINK K K A 602 O2 4MJ A 604 1555 1555 2.85 LINK K K A 602 O4 4MJ A 604 1555 1555 2.95 LINK K K A 602 O HOH A 737 1555 1555 3.27 LINK K K A 603 O HOH A 706 1555 1555 3.22 LINK K K A 603 O HOH A 793 1555 1555 2.79 LINK K K A 603 O HOH A 967 1555 1555 2.74 LINK K K A 603 O HOH A1097 1555 1555 2.73 CISPEP 1 LEU A 63 PHE A 64 0 -10.06 CISPEP 2 PRO A 188 PRO A 189 0 5.27 CISPEP 3 GLY A 278 PRO A 279 0 1.81 CISPEP 4 LEU A 319 THR A 320 0 -1.42 SITE 1 AC1 7 ASN A 168 HIS A 191 GLU A 233 K A 602 SITE 2 AC1 7 4MJ A 604 HOH A 737 HOH A 837 SITE 1 AC2 7 TRP A 169 ALA A 222 SER A 223 MET A 225 SITE 2 AC2 7 GLU A 233 MN A 601 4MJ A 604 SITE 1 AC3 7 ARG A 421 ASP A 427 ASP A 459 LEU A 461 SITE 2 AC3 7 HOH A 793 HOH A 967 HOH A1097 SITE 1 AC4 27 THR A 153 ASN A 168 SER A 170 ILE A 171 SITE 2 AC4 27 ALA A 172 ARG A 173 LEU A 185 GLN A 190 SITE 3 AC4 27 HIS A 191 SER A 223 SER A 224 MET A 225 SITE 4 AC4 27 PRO A 226 GLU A 233 ILE A 327 LYS A 391 SITE 5 AC4 27 PHE A 437 LEU A 439 MN A 601 K A 602 SITE 6 AC4 27 HOH A 737 HOH A 740 HOH A 754 HOH A 760 SITE 7 AC4 27 HOH A 869 HOH A 875 HOH A 955 CRYST1 96.270 63.730 87.420 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011439 0.00000