HEADER TRANSFERASE 07-NOV-17 6EWZ TITLE CRYSTAL STRUCTURE OF RELP (SAS2) FROM STAPHYLOCOCCUS AUREUS BOUND TO TITLE 2 AMPCPP AND GTP IN THE PRE-CATALYTIC STATE CAVEAT 6EWZ APC A 302 HAS WRONG CHIRALITY AT ATOM C2' APC B 302 HAS CAVEAT 2 6EWZ WRONG CHIRALITY AT ATOM C2' COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GTP PYROPHOSPHOKINASE YWAC,RELA/SPOT DOMAIN PROTEIN; COMPND 5 EC: 2.7.6.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: YWAC, BER48_002454, CEJ93_03805, ERS072738_01254, SOURCE 5 ERS073583_01544, ERS074020_00750, HMPREF3211_00175; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MAGIC SPOT, (P)PPGPP, SMALL ALARMONE SYNTHETASE, PERSISTENCE, KEYWDS 2 RESISTANCE, MRSA, STAPHYLOCOCCUS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.MANAV,D.E.BRODERSEN REVDAT 3 17-JAN-24 6EWZ 1 REMARK LINK REVDAT 2 28-MAR-18 6EWZ 1 JRNL REVDAT 1 24-JAN-18 6EWZ 0 JRNL AUTH M.C.MANAV,J.BELJANTSEVA,M.S.BOJER,T.TENSON,H.INGMER, JRNL AUTH 2 V.HAURYLIUK,D.E.BRODERSEN JRNL TITL STRUCTURAL BASIS FOR (P)PPGPP SYNTHESIS BY THESTAPHYLOCOCCUS JRNL TITL 2 AUREUSSMALL ALARMONE SYNTHETASE RELP. JRNL REF J. BIOL. CHEM. V. 293 3254 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29326162 JRNL DOI 10.1074/JBC.RA117.001374 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.9200 - 2.2400 1.00 42042 0 0.0000 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 63.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.05537 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 1.81100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.5 25% (W/V) PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 62.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.53500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.76750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.56000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 164.30250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 164.30250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.76750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 62.56000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.53500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.56000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 109.53500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.56000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 164.30250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 54.76750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.56000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 54.76750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 164.30250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.56000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.53500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 187.68000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 164.30250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 TYR A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 ARG A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 PHE A 18 REMARK 465 LYS A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 PHE A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 465 VAL B 3 REMARK 465 ASP B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 SER B 8 REMARK 465 LEU B 9 REMARK 465 TYR B 10 REMARK 465 LEU B 11 REMARK 465 GLU B 12 REMARK 465 ASP B 13 REMARK 465 LEU B 14 REMARK 465 ARG B 15 REMARK 465 HIS B 16 REMARK 465 ASP B 17 REMARK 465 PHE B 18 REMARK 465 LYS B 19 REMARK 465 ASN B 20 REMARK 465 SER B 21 REMARK 465 LEU B 22 REMARK 465 SER B 23 REMARK 465 LYS B 24 REMARK 465 PHE B 25 REMARK 465 GLU B 26 REMARK 465 ASN B 27 REMARK 465 GLY B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 GLY B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 52 N CA C O CB CG1 CG2 REMARK 480 ILE A 52 CD1 REMARK 480 MET B 184 N CA C O CB CG SD REMARK 480 MET B 184 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 99 O HOH A 401 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 88.71 -64.56 REMARK 500 SER A 153 154.48 176.93 REMARK 500 TYR A 194 33.52 -87.86 REMARK 500 ASN A 196 154.60 58.64 REMARK 500 ASP B 33 60.50 -68.33 REMARK 500 THR B 34 58.61 -69.90 REMARK 500 SER B 153 154.96 176.79 REMARK 500 SER B 153 154.96 179.67 REMARK 500 ASN B 196 103.35 -52.72 REMARK 500 THR B 200 41.85 88.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 465 DISTANCE = 6.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 304 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 51 OE1 REMARK 620 2 HOH A 419 O 69.0 REMARK 620 3 HOH A 433 O 73.6 142.3 REMARK 620 4 HOH A 436 O 74.5 79.0 87.0 REMARK 620 5 HOH A 444 O 82.0 77.5 102.0 151.4 REMARK 620 6 GLU B 51 OE1 139.1 132.0 76.5 76.8 131.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 GTP A 301 O3' 170.5 REMARK 620 3 APC A 302 O3G 99.9 87.3 REMARK 620 4 APC A 302 O2B 92.5 93.0 94.4 REMARK 620 5 HOH A 406 O 86.4 86.3 100.0 165.6 REMARK 620 6 HOH A 424 O 90.0 82.5 169.7 87.8 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 107 OD2 REMARK 620 2 GTP B 301 O3' 171.3 REMARK 620 3 APC B 302 O3G 93.0 82.9 REMARK 620 4 APC B 302 O1B 89.6 82.9 92.0 REMARK 620 5 HOH B 401 O 89.6 98.5 97.3 170.7 REMARK 620 6 HOH B 412 O 96.8 86.6 168.8 82.7 88.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 DBREF 6EWZ A 1 230 UNP W8U368 W8U368_STAAU 1 230 DBREF 6EWZ B 1 230 UNP W8U368 W8U368_STAAU 1 230 SEQADV 6EWZ GLY A 231 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS A 232 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS A 233 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS A 234 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS A 235 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS A 236 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS A 237 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ GLY B 231 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS B 232 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS B 233 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS B 234 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS B 235 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS B 236 UNP W8U368 EXPRESSION TAG SEQADV 6EWZ HIS B 237 UNP W8U368 EXPRESSION TAG SEQRES 1 A 237 MET TYR VAL ASP ARG LYS PRO SER LEU TYR LEU GLU ASP SEQRES 2 A 237 LEU ARG HIS ASP PHE LYS ASN SER LEU SER LYS PHE GLU SEQRES 3 A 237 ASN GLY ASP GLU ALA PHE ASP THR LEU LEU GLY PHE VAL SEQRES 4 A 237 GLU LEU ASP HIS ILE TYR SER SER ALA LEU LYS GLU ILE SEQRES 5 A 237 SER THR LYS LEU SER ILE LEU ASP ASP ASN PHE ASN HIS SEQRES 6 A 237 ILE TYR LYS HIS ASN PRO ILE HIS HIS MET GLU ARG ARG SEQRES 7 A 237 VAL LYS GLU MET ARG SER LEU ILE GLU LYS LEU ASN ARG SEQRES 8 A 237 LYS GLY LEU GLN ILE SER ALA GLU THR ALA LYS GLU HIS SEQRES 9 A 237 ILE LEU ASP ILE ALA GLY ILE ARG VAL VAL CYS ASN TYR SEQRES 10 A 237 LEU ASP ASP ILE TYR LEU ILE GLU GLU MET LEU LEU LYS SEQRES 11 A 237 GLN GLU ASP VAL GLN LEU ILE LYS ARG LYS ASP TYR ILE SEQRES 12 A 237 GLN HIS PRO LYS GLU ASN GLY TYR ARG SER LEU HIS ILE SEQRES 13 A 237 VAL VAL SER ILE PRO VAL PHE LEU ALA GLU ARG VAL GLU SEQRES 14 A 237 VAL LEU PRO VAL GLU ILE GLN ILE ARG THR ILE GLY MET SEQRES 15 A 237 ASP MET TRP ALA SER LEU GLU HIS LYS ILE ARG TYR LYS SEQRES 16 A 237 ASN ASN ALA GLU THR GLU LYS TYR ARG ASP LEU LEU LYS SEQRES 17 A 237 GLU CYS ALA THR GLU ILE THR GLU VAL GLU ASP LYS LEU SEQRES 18 A 237 GLN GLN ILE HIS SER GLU ILE THR GLU GLY HIS HIS HIS SEQRES 19 A 237 HIS HIS HIS SEQRES 1 B 237 MET TYR VAL ASP ARG LYS PRO SER LEU TYR LEU GLU ASP SEQRES 2 B 237 LEU ARG HIS ASP PHE LYS ASN SER LEU SER LYS PHE GLU SEQRES 3 B 237 ASN GLY ASP GLU ALA PHE ASP THR LEU LEU GLY PHE VAL SEQRES 4 B 237 GLU LEU ASP HIS ILE TYR SER SER ALA LEU LYS GLU ILE SEQRES 5 B 237 SER THR LYS LEU SER ILE LEU ASP ASP ASN PHE ASN HIS SEQRES 6 B 237 ILE TYR LYS HIS ASN PRO ILE HIS HIS MET GLU ARG ARG SEQRES 7 B 237 VAL LYS GLU MET ARG SER LEU ILE GLU LYS LEU ASN ARG SEQRES 8 B 237 LYS GLY LEU GLN ILE SER ALA GLU THR ALA LYS GLU HIS SEQRES 9 B 237 ILE LEU ASP ILE ALA GLY ILE ARG VAL VAL CYS ASN TYR SEQRES 10 B 237 LEU ASP ASP ILE TYR LEU ILE GLU GLU MET LEU LEU LYS SEQRES 11 B 237 GLN GLU ASP VAL GLN LEU ILE LYS ARG LYS ASP TYR ILE SEQRES 12 B 237 GLN HIS PRO LYS GLU ASN GLY TYR ARG SER LEU HIS ILE SEQRES 13 B 237 VAL VAL SER ILE PRO VAL PHE LEU ALA GLU ARG VAL GLU SEQRES 14 B 237 VAL LEU PRO VAL GLU ILE GLN ILE ARG THR ILE GLY MET SEQRES 15 B 237 ASP MET TRP ALA SER LEU GLU HIS LYS ILE ARG TYR LYS SEQRES 16 B 237 ASN ASN ALA GLU THR GLU LYS TYR ARG ASP LEU LEU LYS SEQRES 17 B 237 GLU CYS ALA THR GLU ILE THR GLU VAL GLU ASP LYS LEU SEQRES 18 B 237 GLN GLN ILE HIS SER GLU ILE THR GLU GLY HIS HIS HIS SEQRES 19 B 237 HIS HIS HIS HET GTP A 301 44 HET APC A 302 45 HET MG A 303 1 HET FE A 304 1 HET GTP B 301 44 HET APC B 302 45 HET MG B 303 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM MG MAGNESIUM ION HETNAM FE FE (III) ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 APC 2(C11 H18 N5 O12 P3) FORMUL 5 MG 2(MG 2+) FORMUL 6 FE FE 3+ FORMUL 10 HOH *99(H2 O) HELIX 1 AA1 PHE A 32 LYS A 68 1 37 HELIX 2 AA2 GLU A 81 LYS A 92 1 12 HELIX 3 AA3 SER A 97 ILE A 105 1 9 HELIX 4 AA4 TYR A 117 LYS A 130 1 14 HELIX 5 AA5 ILE A 180 TYR A 194 1 15 HELIX 6 AA6 LYS A 195 GLU A 201 1 7 HELIX 7 AA7 TYR A 203 ILE A 228 1 26 HELIX 8 AA8 LEU B 36 LYS B 68 1 33 HELIX 9 AA9 GLU B 81 LYS B 92 1 12 HELIX 10 AB1 SER B 97 ILE B 105 1 9 HELIX 11 AB2 TYR B 117 LYS B 130 1 14 HELIX 12 AB3 ILE B 180 TYR B 194 1 15 HELIX 13 AB4 TYR B 203 THR B 229 1 27 SHEET 1 AA1 5 ILE A 72 VAL A 79 0 SHEET 2 AA1 5 ALA A 109 CYS A 115 -1 O VAL A 114 N HIS A 73 SHEET 3 AA1 5 VAL A 168 THR A 179 1 O ARG A 178 N CYS A 115 SHEET 4 AA1 5 LEU A 154 PHE A 163 -1 N LEU A 154 O ILE A 177 SHEET 5 AA1 5 GLN A 135 ASP A 141 -1 N ILE A 137 O VAL A 157 SHEET 1 AA2 5 ILE B 72 VAL B 79 0 SHEET 2 AA2 5 ALA B 109 CYS B 115 -1 O VAL B 114 N HIS B 73 SHEET 3 AA2 5 VAL B 168 THR B 179 1 O ARG B 178 N CYS B 115 SHEET 4 AA2 5 LEU B 154 PHE B 163 -1 N LEU B 154 O ILE B 177 SHEET 5 AA2 5 GLN B 135 ASP B 141 -1 N ILE B 137 O VAL B 157 LINK OE1 GLU A 51 FE FE A 304 1555 1555 2.40 LINK OD2 ASP A 107 MG MG A 303 1555 1555 2.05 LINK O3' GTP A 301 MG MG A 303 1555 1555 2.40 LINK O3G APC A 302 MG MG A 303 1555 1555 2.07 LINK O2B APC A 302 MG MG A 303 1555 1555 2.21 LINK MG MG A 303 O HOH A 406 1555 1555 2.26 LINK MG MG A 303 O HOH A 424 1555 1555 2.06 LINK FE FE A 304 O HOH A 419 1555 1555 2.74 LINK FE FE A 304 O HOH A 433 1555 1555 2.52 LINK FE FE A 304 O HOH A 436 1555 1555 2.54 LINK FE FE A 304 O HOH A 444 1555 1555 2.73 LINK FE FE A 304 OE1 GLU B 51 1555 1555 2.35 LINK OD2 ASP B 107 MG MG B 303 1555 1555 2.15 LINK O3' GTP B 301 MG MG B 303 1555 1555 2.37 LINK O3G APC B 302 MG MG B 303 1555 1555 2.06 LINK O1B APC B 302 MG MG B 303 1555 1555 2.53 LINK MG MG B 303 O HOH B 401 1555 1555 2.21 LINK MG MG B 303 O HOH B 412 1555 1555 2.06 SITE 1 AC1 21 LYS A 88 LYS A 92 LYS A 138 LYS A 140 SITE 2 AC1 21 TYR A 142 LYS A 147 ASN A 149 TYR A 151 SITE 3 AC1 21 HIS A 155 GLU A 174 GLN A 176 ALA A 186 SITE 4 AC1 21 GLU A 189 ARG A 193 APC A 302 MG A 303 SITE 5 AC1 21 HOH A 406 HOH A 407 HOH A 413 HOH A 424 SITE 6 AC1 21 HOH A 449 SITE 1 AC2 18 GLU A 76 ARG A 78 LYS A 80 SER A 84 SITE 2 AC2 18 LYS A 88 ARG A 91 ASP A 107 GLY A 110 SITE 3 AC2 18 ILE A 111 ARG A 112 GLU A 174 GLN A 176 SITE 4 AC2 18 GTP A 301 MG A 303 HOH A 424 HOH A 425 SITE 5 AC2 18 HOH A 441 HOH A 446 SITE 1 AC3 7 LYS A 80 LYS A 88 ASP A 107 GTP A 301 SITE 2 AC3 7 APC A 302 HOH A 406 HOH A 424 SITE 1 AC4 8 GLU A 51 HOH A 419 HOH A 433 HOH A 436 SITE 2 AC4 8 HOH A 444 GLU B 51 HOH B 405 HOH B 414 SITE 1 AC5 17 LYS B 88 LYS B 92 LYS B 138 TYR B 142 SITE 2 AC5 17 LYS B 147 ASN B 149 TYR B 151 HIS B 155 SITE 3 AC5 17 GLU B 174 GLN B 176 ALA B 186 GLU B 189 SITE 4 AC5 17 HIS B 190 APC B 302 MG B 303 HOH B 401 SITE 5 AC5 17 HOH B 412 SITE 1 AC6 16 GLU B 76 ARG B 78 LYS B 80 SER B 84 SITE 2 AC6 16 LYS B 88 ARG B 91 ASP B 107 GLY B 110 SITE 3 AC6 16 ILE B 111 ARG B 112 GLU B 174 GLN B 176 SITE 4 AC6 16 HIS B 190 GTP B 301 MG B 303 HOH B 412 SITE 1 AC7 7 LYS B 80 LYS B 88 ASP B 107 GTP B 301 SITE 2 AC7 7 APC B 302 HOH B 401 HOH B 412 CRYST1 125.120 125.120 219.070 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004565 0.00000