HEADER HYDROLASE 15-NOV-17 6EZH TITLE TORPEDO CALIFORNICA ACHE IN COMPLEX WITH INDOLIC MULTI-TARGET DIRECTED TITLE 2 LIGAND CAVEAT 6EZH NAG A 601 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLCHOLINESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACHE; COMPND 5 EC: 3.1.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRONARCE CALIFORNICA; SOURCE 3 ORGANISM_COMMON: PACIFIC ELECTRIC RAY; SOURCE 4 ORGANISM_TAXID: 7787 KEYWDS ACETYLCHOLINESTERASE, MULTI-TARGET INHIBITOR, ALZHEIMER DESEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SANTONI,J.LALUT,D.KARILA,C.LECOUTEY,A.DAVIS,F.NACHON,I.SILLMAN, AUTHOR 2 J.SUSSMAN,M.WEIK,T.MAURICE,P.DALLEMAGNE,C.ROCHAIS REVDAT 4 17-JAN-24 6EZH 1 HETSYN REVDAT 3 29-JUL-20 6EZH 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 28-NOV-18 6EZH 1 JRNL REVDAT 1 21-NOV-18 6EZH 0 JRNL AUTH J.LALUT,G.SANTONI,D.KARILA,C.LECOUTEY,A.DAVIS,F.NACHON, JRNL AUTH 2 I.SILMAN,J.SUSSMAN,M.WEIK,T.MAURICE,P.DALLEMAGNE,C.ROCHAIS JRNL TITL NOVEL MULTITARGET-DIRECTED LIGANDS TARGETING JRNL TITL 2 ACETYLCHOLINESTERASE AND SIGMA1RECEPTORS AS LEAD COMPOUNDS JRNL TITL 3 FOR TREATMENT OF ALZHEIMER'S DISEASE: SYNTHESIS, EVALUATION, JRNL TITL 4 AND STRUCTURAL CHARACTERIZATION OF THEIR COMPLEXES WITH JRNL TITL 5 ACETYLCHOLINESTERASE. JRNL REF EUR J MED CHEM V. 162 234 2018 JRNL REFN ISSN 1768-3254 JRNL PMID 30447434 JRNL DOI 10.1016/J.EJMECH.2018.10.064 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1379 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.61000 REMARK 3 B22 (A**2) : 5.28000 REMARK 3 B33 (A**2) : -3.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.632 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.326 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8876 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8115 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12059 ; 1.271 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18693 ; 3.976 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1064 ; 6.204 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 423 ;34.942 ;23.995 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1415 ;16.545 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.366 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1257 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10081 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2148 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4259 ; 3.126 ; 1.267 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4258 ; 3.119 ; 1.267 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5322 ; 4.162 ; 1.881 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5323 ; 4.165 ; 1.882 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4617 ; 4.779 ; 1.402 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4554 ; 4.754 ; 1.382 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6650 ; 5.843 ; 1.984 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10880 ; 6.030 ;10.502 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10602 ; 5.923 ;10.211 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.490 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EA5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% PEG 200 150MM MES PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 536 REMARK 465 CYS A 537 REMARK 465 ASP B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 536 REMARK 465 CYS B 537 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 765 O HOH A 838 1.88 REMARK 500 O VAL B 293 O HOH B 701 1.90 REMARK 500 OD2 ASP A 381 O HOH A 701 1.90 REMARK 500 O HOH B 835 O HOH B 919 1.94 REMARK 500 O GLU A 489 O HOH A 702 1.96 REMARK 500 O HOH A 743 O HOH A 955 1.96 REMARK 500 O HOH A 928 O HOH A 966 1.98 REMARK 500 O HOH A 833 O HOH A 867 1.98 REMARK 500 NZ LYS B 14 O HOH B 702 2.02 REMARK 500 NH1 ARG A 88 O HOH A 703 2.02 REMARK 500 O ASN B 416 O HOH B 703 2.03 REMARK 500 OD1 ASP B 393 O HOH B 704 2.03 REMARK 500 OH TYR A 472 O HOH A 704 2.04 REMARK 500 O ALA A 477 O HOH A 705 2.05 REMARK 500 NH2 ARG B 221 O HOH B 705 2.05 REMARK 500 O HOH A 921 O HOH A 951 2.05 REMARK 500 OG1 THR A 193 O HOH A 706 2.06 REMARK 500 O HOH B 892 O HOH B 947 2.06 REMARK 500 O ASN A 85 O HOH A 707 2.07 REMARK 500 O HOH A 747 O HOH A 969 2.09 REMARK 500 O HOH A 805 O HOH A 939 2.09 REMARK 500 NZ LYS B 52 O HOH B 706 2.10 REMARK 500 O HOH A 868 O HOH A 890 2.11 REMARK 500 O HOH B 793 O HOH B 822 2.11 REMARK 500 O MET A 83 O HOH A 708 2.13 REMARK 500 NZ LYS A 52 O HOH A 709 2.13 REMARK 500 O HOH A 894 O HOH A 945 2.14 REMARK 500 O HOH A 857 O HOH A 935 2.14 REMARK 500 OD1 ASN B 42 O HOH B 707 2.15 REMARK 500 ND2 ASN A 533 O HOH A 710 2.15 REMARK 500 O HOH B 915 O HOH B 964 2.15 REMARK 500 O HOH B 786 O HOH B 955 2.15 REMARK 500 O HOH B 751 O HOH B 893 2.15 REMARK 500 O HOH B 749 O HOH B 914 2.15 REMARK 500 OG SER B 12 O HOH B 708 2.16 REMARK 500 O HOH B 896 O HOH B 912 2.16 REMARK 500 NZ LYS B 478 O HOH B 709 2.17 REMARK 500 ND2 ASN A 416 C2 NAG A 602 2.17 REMARK 500 O HOH B 716 O HOH B 920 2.18 REMARK 500 O HOH B 751 O HOH B 951 2.19 REMARK 500 O HOH A 940 O HOH A 965 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 24 18.49 58.51 REMARK 500 SER A 25 -157.06 -136.76 REMARK 500 PHE A 45 -8.67 77.04 REMARK 500 ALA A 60 42.76 -105.77 REMARK 500 SER A 200 -115.69 53.21 REMARK 500 GLU A 299 -64.75 -120.41 REMARK 500 THR A 317 -147.68 -159.02 REMARK 500 ASP A 326 60.84 -114.83 REMARK 500 VAL A 360 64.73 -115.20 REMARK 500 ASP A 380 38.26 -165.29 REMARK 500 VAL A 400 -68.58 -123.62 REMARK 500 SER A 487 117.74 76.32 REMARK 500 GLN A 488 -18.23 69.52 REMARK 500 LYS A 498 -73.62 -65.66 REMARK 500 ARG A 517 48.76 33.01 REMARK 500 LEU B 23 61.01 38.26 REMARK 500 SER B 25 -158.31 -144.76 REMARK 500 PHE B 45 -12.66 71.31 REMARK 500 ALA B 60 54.89 -96.29 REMARK 500 PRO B 64 -168.15 -75.99 REMARK 500 SER B 200 -115.63 56.78 REMARK 500 GLU B 299 -57.49 -131.48 REMARK 500 THR B 317 -154.24 -145.82 REMARK 500 ASP B 380 33.42 -153.80 REMARK 500 VAL B 400 -69.97 -120.73 REMARK 500 HIS B 440 122.57 -36.80 REMARK 500 HIS B 486 50.41 35.78 REMARK 500 ASN B 506 -166.08 -163.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 488 GLU A 489 128.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EA5 RELATED DB: PDB REMARK 900 RELATED ID: 2W75 RELATED DB: PDB REMARK 900 RELATED ID: 1EVE RELATED DB: PDB REMARK 900 RELATED ID: 6EZG RELATED DB: PDB DBREF 6EZH A 1 537 UNP P04058 ACES_TETCF 22 558 DBREF 6EZH B 1 537 UNP P04058 ACES_TETCF 22 558 SEQRES 1 A 537 ASP ASP HIS SER GLU LEU LEU VAL ASN THR LYS SER GLY SEQRES 2 A 537 LYS VAL MET GLY THR ARG VAL PRO VAL LEU SER SER HIS SEQRES 3 A 537 ILE SER ALA PHE LEU GLY ILE PRO PHE ALA GLU PRO PRO SEQRES 4 A 537 VAL GLY ASN MET ARG PHE ARG ARG PRO GLU PRO LYS LYS SEQRES 5 A 537 PRO TRP SER GLY VAL TRP ASN ALA SER THR TYR PRO ASN SEQRES 6 A 537 ASN CYS GLN GLN TYR VAL ASP GLU GLN PHE PRO GLY PHE SEQRES 7 A 537 SER GLY SER GLU MET TRP ASN PRO ASN ARG GLU MET SER SEQRES 8 A 537 GLU ASP CYS LEU TYR LEU ASN ILE TRP VAL PRO SER PRO SEQRES 9 A 537 ARG PRO LYS SER THR THR VAL MET VAL TRP ILE TYR GLY SEQRES 10 A 537 GLY GLY PHE TYR SER GLY SER SER THR LEU ASP VAL TYR SEQRES 11 A 537 ASN GLY LYS TYR LEU ALA TYR THR GLU GLU VAL VAL LEU SEQRES 12 A 537 VAL SER LEU SER TYR ARG VAL GLY ALA PHE GLY PHE LEU SEQRES 13 A 537 ALA LEU HIS GLY SER GLN GLU ALA PRO GLY ASN VAL GLY SEQRES 14 A 537 LEU LEU ASP GLN ARG MET ALA LEU GLN TRP VAL HIS ASP SEQRES 15 A 537 ASN ILE GLN PHE PHE GLY GLY ASP PRO LYS THR VAL THR SEQRES 16 A 537 ILE PHE GLY GLU SER ALA GLY GLY ALA SER VAL GLY MET SEQRES 17 A 537 HIS ILE LEU SER PRO GLY SER ARG ASP LEU PHE ARG ARG SEQRES 18 A 537 ALA ILE LEU GLN SER GLY SER PRO ASN CYS PRO TRP ALA SEQRES 19 A 537 SER VAL SER VAL ALA GLU GLY ARG ARG ARG ALA VAL GLU SEQRES 20 A 537 LEU GLY ARG ASN LEU ASN CYS ASN LEU ASN SER ASP GLU SEQRES 21 A 537 GLU LEU ILE HIS CYS LEU ARG GLU LYS LYS PRO GLN GLU SEQRES 22 A 537 LEU ILE ASP VAL GLU TRP ASN VAL LEU PRO PHE ASP SER SEQRES 23 A 537 ILE PHE ARG PHE SER PHE VAL PRO VAL ILE ASP GLY GLU SEQRES 24 A 537 PHE PHE PRO THR SER LEU GLU SER MET LEU ASN SER GLY SEQRES 25 A 537 ASN PHE LYS LYS THR GLN ILE LEU LEU GLY VAL ASN LYS SEQRES 26 A 537 ASP GLU GLY SER PHE PHE LEU LEU TYR GLY ALA PRO GLY SEQRES 27 A 537 PHE SER LYS ASP SER GLU SER LYS ILE SER ARG GLU ASP SEQRES 28 A 537 PHE MET SER GLY VAL LYS LEU SER VAL PRO HIS ALA ASN SEQRES 29 A 537 ASP LEU GLY LEU ASP ALA VAL THR LEU GLN TYR THR ASP SEQRES 30 A 537 TRP MET ASP ASP ASN ASN GLY ILE LYS ASN ARG ASP GLY SEQRES 31 A 537 LEU ASP ASP ILE VAL GLY ASP HIS ASN VAL ILE CYS PRO SEQRES 32 A 537 LEU MET HIS PHE VAL ASN LYS TYR THR LYS PHE GLY ASN SEQRES 33 A 537 GLY THR TYR LEU TYR PHE PHE ASN HIS ARG ALA SER ASN SEQRES 34 A 537 LEU VAL TRP PRO GLU TRP MET GLY VAL ILE HIS GLY TYR SEQRES 35 A 537 GLU ILE GLU PHE VAL PHE GLY LEU PRO LEU VAL LYS GLU SEQRES 36 A 537 LEU ASN TYR THR ALA GLU GLU GLU ALA LEU SER ARG ARG SEQRES 37 A 537 ILE MET HIS TYR TRP ALA THR PHE ALA LYS THR GLY ASN SEQRES 38 A 537 PRO ASN GLU PRO HIS SER GLN GLU SER LYS TRP PRO LEU SEQRES 39 A 537 PHE THR THR LYS GLU GLN LYS PHE ILE ASP LEU ASN THR SEQRES 40 A 537 GLU PRO MET LYS VAL HIS GLN ARG LEU ARG VAL GLN MET SEQRES 41 A 537 CYS VAL PHE TRP ASN GLN PHE LEU PRO LYS LEU LEU ASN SEQRES 42 A 537 ALA THR ALA CYS SEQRES 1 B 537 ASP ASP HIS SER GLU LEU LEU VAL ASN THR LYS SER GLY SEQRES 2 B 537 LYS VAL MET GLY THR ARG VAL PRO VAL LEU SER SER HIS SEQRES 3 B 537 ILE SER ALA PHE LEU GLY ILE PRO PHE ALA GLU PRO PRO SEQRES 4 B 537 VAL GLY ASN MET ARG PHE ARG ARG PRO GLU PRO LYS LYS SEQRES 5 B 537 PRO TRP SER GLY VAL TRP ASN ALA SER THR TYR PRO ASN SEQRES 6 B 537 ASN CYS GLN GLN TYR VAL ASP GLU GLN PHE PRO GLY PHE SEQRES 7 B 537 SER GLY SER GLU MET TRP ASN PRO ASN ARG GLU MET SER SEQRES 8 B 537 GLU ASP CYS LEU TYR LEU ASN ILE TRP VAL PRO SER PRO SEQRES 9 B 537 ARG PRO LYS SER THR THR VAL MET VAL TRP ILE TYR GLY SEQRES 10 B 537 GLY GLY PHE TYR SER GLY SER SER THR LEU ASP VAL TYR SEQRES 11 B 537 ASN GLY LYS TYR LEU ALA TYR THR GLU GLU VAL VAL LEU SEQRES 12 B 537 VAL SER LEU SER TYR ARG VAL GLY ALA PHE GLY PHE LEU SEQRES 13 B 537 ALA LEU HIS GLY SER GLN GLU ALA PRO GLY ASN VAL GLY SEQRES 14 B 537 LEU LEU ASP GLN ARG MET ALA LEU GLN TRP VAL HIS ASP SEQRES 15 B 537 ASN ILE GLN PHE PHE GLY GLY ASP PRO LYS THR VAL THR SEQRES 16 B 537 ILE PHE GLY GLU SER ALA GLY GLY ALA SER VAL GLY MET SEQRES 17 B 537 HIS ILE LEU SER PRO GLY SER ARG ASP LEU PHE ARG ARG SEQRES 18 B 537 ALA ILE LEU GLN SER GLY SER PRO ASN CYS PRO TRP ALA SEQRES 19 B 537 SER VAL SER VAL ALA GLU GLY ARG ARG ARG ALA VAL GLU SEQRES 20 B 537 LEU GLY ARG ASN LEU ASN CYS ASN LEU ASN SER ASP GLU SEQRES 21 B 537 GLU LEU ILE HIS CYS LEU ARG GLU LYS LYS PRO GLN GLU SEQRES 22 B 537 LEU ILE ASP VAL GLU TRP ASN VAL LEU PRO PHE ASP SER SEQRES 23 B 537 ILE PHE ARG PHE SER PHE VAL PRO VAL ILE ASP GLY GLU SEQRES 24 B 537 PHE PHE PRO THR SER LEU GLU SER MET LEU ASN SER GLY SEQRES 25 B 537 ASN PHE LYS LYS THR GLN ILE LEU LEU GLY VAL ASN LYS SEQRES 26 B 537 ASP GLU GLY SER PHE PHE LEU LEU TYR GLY ALA PRO GLY SEQRES 27 B 537 PHE SER LYS ASP SER GLU SER LYS ILE SER ARG GLU ASP SEQRES 28 B 537 PHE MET SER GLY VAL LYS LEU SER VAL PRO HIS ALA ASN SEQRES 29 B 537 ASP LEU GLY LEU ASP ALA VAL THR LEU GLN TYR THR ASP SEQRES 30 B 537 TRP MET ASP ASP ASN ASN GLY ILE LYS ASN ARG ASP GLY SEQRES 31 B 537 LEU ASP ASP ILE VAL GLY ASP HIS ASN VAL ILE CYS PRO SEQRES 32 B 537 LEU MET HIS PHE VAL ASN LYS TYR THR LYS PHE GLY ASN SEQRES 33 B 537 GLY THR TYR LEU TYR PHE PHE ASN HIS ARG ALA SER ASN SEQRES 34 B 537 LEU VAL TRP PRO GLU TRP MET GLY VAL ILE HIS GLY TYR SEQRES 35 B 537 GLU ILE GLU PHE VAL PHE GLY LEU PRO LEU VAL LYS GLU SEQRES 36 B 537 LEU ASN TYR THR ALA GLU GLU GLU ALA LEU SER ARG ARG SEQRES 37 B 537 ILE MET HIS TYR TRP ALA THR PHE ALA LYS THR GLY ASN SEQRES 38 B 537 PRO ASN GLU PRO HIS SER GLN GLU SER LYS TRP PRO LEU SEQRES 39 B 537 PHE THR THR LYS GLU GLN LYS PHE ILE ASP LEU ASN THR SEQRES 40 B 537 GLU PRO MET LYS VAL HIS GLN ARG LEU ARG VAL GLN MET SEQRES 41 B 537 CYS VAL PHE TRP ASN GLN PHE LEU PRO LYS LEU LEU ASN SEQRES 42 B 537 ALA THR ALA CYS HET NAG A 601 14 HET NAG A 602 14 HET C6H A 603 29 HET NAG B 601 14 HET NAG B 602 14 HET C6H B 603 29 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM C6H 1-(7-CHLORANYL-4-METHOXY-1~{H}-INDOL-5-YL)-3-[1- HETNAM 2 C6H (CYCLOHEXYLMETHYL)PIPERIDIN-4-YL]PROPAN-1-ONE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN C6H MR28926 FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 C6H 2(C24 H33 CL N2 O2) FORMUL 9 HOH *550(H2 O) HELIX 1 AA1 VAL A 40 ARG A 44 5 5 HELIX 2 AA2 PHE A 78 MET A 83 1 6 HELIX 3 AA3 LEU A 127 ASN A 131 5 5 HELIX 4 AA4 GLY A 132 GLU A 139 1 8 HELIX 5 AA5 VAL A 150 LEU A 156 1 7 HELIX 6 AA6 ASN A 167 ILE A 184 1 18 HELIX 7 AA7 GLN A 185 PHE A 187 5 3 HELIX 8 AA8 SER A 200 SER A 212 1 13 HELIX 9 AA9 PRO A 213 PHE A 219 5 7 HELIX 10 AB1 SER A 237 ASN A 251 1 15 HELIX 11 AB2 SER A 258 LYS A 269 1 12 HELIX 12 AB3 LYS A 270 VAL A 277 1 8 HELIX 13 AB4 GLU A 278 LEU A 282 5 5 HELIX 14 AB5 SER A 304 GLY A 312 1 9 HELIX 15 AB6 GLY A 328 ALA A 336 1 9 HELIX 16 AB7 SER A 348 VAL A 360 1 13 HELIX 17 AB8 ASN A 364 THR A 376 1 13 HELIX 18 AB9 ASN A 383 VAL A 400 1 18 HELIX 19 AC1 VAL A 400 GLY A 415 1 16 HELIX 20 AC2 PRO A 433 GLY A 437 5 5 HELIX 21 AC3 GLU A 443 PHE A 448 1 6 HELIX 22 AC4 GLY A 449 ASN A 457 5 9 HELIX 23 AC5 THR A 459 GLY A 480 1 22 HELIX 24 AC6 ARG A 517 GLN A 526 1 10 HELIX 25 AC7 GLN A 526 THR A 535 1 10 HELIX 26 AC8 VAL B 40 ARG B 44 5 5 HELIX 27 AC9 PHE B 78 MET B 83 1 6 HELIX 28 AD1 LEU B 127 ASN B 131 5 5 HELIX 29 AD2 GLY B 132 GLU B 140 1 9 HELIX 30 AD3 VAL B 150 LEU B 156 1 7 HELIX 31 AD4 ASN B 167 ILE B 184 1 18 HELIX 32 AD5 GLN B 185 PHE B 187 5 3 HELIX 33 AD6 SER B 200 SER B 212 1 13 HELIX 34 AD7 PRO B 213 PHE B 219 5 7 HELIX 35 AD8 VAL B 238 ASN B 251 1 14 HELIX 36 AD9 SER B 258 LYS B 269 1 12 HELIX 37 AE1 LYS B 270 GLU B 278 1 9 HELIX 38 AE2 TRP B 279 LEU B 282 5 4 HELIX 39 AE3 SER B 304 GLY B 312 1 9 HELIX 40 AE4 GLY B 328 ALA B 336 1 9 HELIX 41 AE5 SER B 348 VAL B 360 1 13 HELIX 42 AE6 ASN B 364 THR B 376 1 13 HELIX 43 AE7 ASN B 383 VAL B 400 1 18 HELIX 44 AE8 VAL B 400 LYS B 413 1 14 HELIX 45 AE9 PRO B 433 GLY B 437 5 5 HELIX 46 AF1 GLU B 443 PHE B 448 1 6 HELIX 47 AF2 GLY B 449 ASN B 457 5 9 HELIX 48 AF3 THR B 459 GLY B 480 1 22 HELIX 49 AF4 ARG B 517 GLN B 526 1 10 HELIX 50 AF5 GLN B 526 ALA B 534 1 9 SHEET 1 AA1 3 LEU A 7 THR A 10 0 SHEET 2 AA1 3 GLY A 13 MET A 16 -1 O GLY A 13 N THR A 10 SHEET 3 AA1 3 VAL A 57 ASN A 59 1 O TRP A 58 N LYS A 14 SHEET 1 AA211 THR A 18 VAL A 22 0 SHEET 2 AA211 SER A 25 PRO A 34 -1 O ALA A 29 N THR A 18 SHEET 3 AA211 TYR A 96 PRO A 102 -1 O VAL A 101 N SER A 28 SHEET 4 AA211 VAL A 142 SER A 145 -1 O LEU A 143 N TRP A 100 SHEET 5 AA211 THR A 109 ILE A 115 1 N TRP A 114 O VAL A 144 SHEET 6 AA211 GLY A 189 GLU A 199 1 O THR A 195 N VAL A 111 SHEET 7 AA211 ARG A 221 GLN A 225 1 O GLN A 225 N GLY A 198 SHEET 8 AA211 ILE A 319 ASN A 324 1 O LEU A 320 N ALA A 222 SHEET 9 AA211 THR A 418 PHE A 423 1 O PHE A 423 N VAL A 323 SHEET 10 AA211 LYS A 501 LEU A 505 1 O LEU A 505 N PHE A 422 SHEET 11 AA211 VAL A 512 GLN A 514 -1 O HIS A 513 N PHE A 502 SHEET 1 AA3 2 ASN A 66 CYS A 67 0 SHEET 2 AA3 2 MET A 90 SER A 91 1 O SER A 91 N ASN A 66 SHEET 1 AA4 3 LEU B 7 THR B 10 0 SHEET 2 AA4 3 GLY B 13 MET B 16 -1 O GLY B 13 N THR B 10 SHEET 3 AA4 3 VAL B 57 ASN B 59 1 O TRP B 58 N MET B 16 SHEET 1 AA511 THR B 18 VAL B 22 0 SHEET 2 AA511 SER B 25 PRO B 34 -1 O ALA B 29 N THR B 18 SHEET 3 AA511 TYR B 96 VAL B 101 -1 O VAL B 101 N SER B 28 SHEET 4 AA511 VAL B 142 SER B 145 -1 O SER B 145 N ASN B 98 SHEET 5 AA511 THR B 109 ILE B 115 1 N TRP B 114 O VAL B 144 SHEET 6 AA511 GLY B 189 GLU B 199 1 O ASP B 190 N THR B 109 SHEET 7 AA511 ARG B 221 GLN B 225 1 O ILE B 223 N ILE B 196 SHEET 8 AA511 ILE B 319 ASN B 324 1 O LEU B 320 N ALA B 222 SHEET 9 AA511 THR B 418 PHE B 423 1 O PHE B 423 N VAL B 323 SHEET 10 AA511 LYS B 501 LEU B 505 1 O ILE B 503 N PHE B 422 SHEET 11 AA511 VAL B 512 GLN B 514 -1 O HIS B 513 N PHE B 502 SHEET 1 AA6 2 VAL B 236 SER B 237 0 SHEET 2 AA6 2 VAL B 295 ILE B 296 1 O ILE B 296 N VAL B 236 SSBOND 1 CYS A 67 CYS A 94 1555 1555 2.02 SSBOND 2 CYS A 254 CYS A 265 1555 1555 2.03 SSBOND 3 CYS A 402 CYS A 521 1555 1555 2.03 SSBOND 4 CYS B 67 CYS B 94 1555 1555 2.05 SSBOND 5 CYS B 254 CYS B 265 1555 1555 2.03 SSBOND 6 CYS B 402 CYS B 521 1555 1555 2.05 LINK ND2 ASN A 59 C1 NAG A 601 1555 1555 1.46 LINK ND2 ASN A 416 C1 NAG A 602 1555 1555 1.46 LINK ND2 ASN B 59 C1 NAG B 601 1555 1555 1.44 LINK ND2 ASN B 416 C1 NAG B 602 1555 1555 1.45 CISPEP 1 SER A 103 PRO A 104 0 7.63 CISPEP 2 SER A 487 GLN A 488 0 24.03 CISPEP 3 GLU A 489 SER A 490 0 -14.90 CISPEP 4 SER B 103 PRO B 104 0 12.50 CRYST1 91.440 106.740 150.750 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006633 0.00000