HEADER PROTEIN BINDING 15-NOV-17 6EZI TITLE PDZK1 DOMAIN 4 IN COMPLEX WITH C-TERMINAL PEPTIDE OF HUMAN PEPT2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NA(+)/H(+) EXCHANGE REGULATORY COFACTOR NHE-RF3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NHERF-3,CFTR-ASSOCIATED PROTEIN OF 70 KDA,NA(+)/H(+) COMPND 5 EXCHANGER REGULATORY FACTOR 3,NA/PI COTRANSPORTER C-TERMINAL- COMPND 6 ASSOCIATED PROTEIN 1,NAPI-CAP1,PDZ DOMAIN-CONTAINING PROTEIN 1, COMPND 7 SODIUM-HYDROGEN EXCHANGER REGULATORY FACTOR 3; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SOLUTE CARRIER FAMILY 15 MEMBER 2; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: KIDNEY H(+)/PEPTIDE COTRANSPORTER,OLIGOPEPTIDE TRANSPORTER, COMPND 13 KIDNEY ISOFORM,PEPTIDE TRANSPORTER 2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDZK1, CAP70, NHERF3, PDZD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PDZK1 HUMAN PEPTIDE TRANSPORTER NA(+)-H(+) EXCHANGE REGULATORY KEYWDS 2 COFACTOR NHE-RF3 PROTEIN COMPLEX BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.LOEW,A.FLAYHAN,J.PIEPRZYK REVDAT 3 17-JAN-24 6EZI 1 REMARK REVDAT 2 14-NOV-18 6EZI 1 JRNL REVDAT 1 26-SEP-18 6EZI 0 JRNL AUTH N.R.HAJIZADEH,J.PIEPRZYK,P.SKOPINTSEV,A.FLAYHAN,D.I.SVERGUN, JRNL AUTH 2 C.LOW JRNL TITL PROBING THE ARCHITECTURE OF A MULTI-PDZ DOMAIN PROTEIN: JRNL TITL 2 STRUCTURE OF PDZK1 IN SOLUTION. JRNL REF STRUCTURE V. 26 1522 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30220543 JRNL DOI 10.1016/J.STR.2018.07.016 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.363 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.001 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1349 - 3.0064 1.00 2835 150 0.1566 0.1676 REMARK 3 2 3.0064 - 2.3863 1.00 2648 139 0.1846 0.1965 REMARK 3 3 2.3863 - 2.0847 1.00 2581 136 0.1727 0.2172 REMARK 3 4 2.0847 - 1.8940 1.00 2569 135 0.1936 0.2344 REMARK 3 5 1.8940 - 1.7583 1.00 2547 134 0.2401 0.2589 REMARK 3 6 1.7583 - 1.6546 1.00 2540 134 0.2908 0.3255 REMARK 3 7 1.6546 - 1.5717 1.00 2542 134 0.3335 0.3474 REMARK 3 8 1.5717 - 1.5033 0.99 2499 131 0.3807 0.4157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.217 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 809 REMARK 3 ANGLE : 0.836 1100 REMARK 3 CHIRALITY : 0.059 127 REMARK 3 PLANARITY : 0.005 146 REMARK 3 DIHEDRAL : 14.904 314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2712 7.4560 80.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.1191 REMARK 3 T33: 0.2284 T12: -0.0399 REMARK 3 T13: -0.0078 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 6.3843 L22: 8.3663 REMARK 3 L33: 3.5462 L12: -1.0237 REMARK 3 L13: 1.9221 L23: 3.7368 REMARK 3 S TENSOR REMARK 3 S11: 0.2910 S12: 0.3715 S13: 0.0314 REMARK 3 S21: 0.1323 S22: -0.4102 S23: -0.2623 REMARK 3 S31: -0.2851 S32: -0.0035 S33: 0.0521 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1881 15.4282 77.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.4783 T22: 0.2008 REMARK 3 T33: 0.2551 T12: -0.0545 REMARK 3 T13: -0.0302 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.6701 L22: 2.2746 REMARK 3 L33: 2.7229 L12: 0.4527 REMARK 3 L13: 0.8391 L23: 0.4755 REMARK 3 S TENSOR REMARK 3 S11: -0.1984 S12: 0.2313 S13: 0.3770 REMARK 3 S21: -0.0854 S22: -0.0577 S23: -0.0736 REMARK 3 S31: -0.9542 S32: 0.1763 S33: 0.2747 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 427 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3814 11.3110 73.5245 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.2538 REMARK 3 T33: 0.2286 T12: 0.0901 REMARK 3 T13: -0.0054 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.9056 L22: 7.5704 REMARK 3 L33: 4.4694 L12: -1.4519 REMARK 3 L13: 0.9916 L23: 1.2400 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: -0.1508 S13: 0.2172 REMARK 3 S21: -0.2368 S22: -0.2139 S23: 0.2971 REMARK 3 S31: -0.6603 S32: -0.8538 S33: 0.0679 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 445 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4387 6.8350 78.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.2382 T22: 0.0995 REMARK 3 T33: 0.1860 T12: -0.0630 REMARK 3 T13: -0.0043 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 6.7217 L22: 3.1479 REMARK 3 L33: 4.6535 L12: -3.5972 REMARK 3 L13: 1.0807 L23: 1.7572 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: 0.0721 S13: 0.0743 REMARK 3 S21: 0.0970 S22: 0.0404 S23: 0.0832 REMARK 3 S31: -0.4362 S32: 0.0179 S33: -0.1347 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 764 THROUGH 771 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7096 22.2953 80.8669 REMARK 3 T TENSOR REMARK 3 T11: 0.8800 T22: 0.3169 REMARK 3 T33: 0.5202 T12: 0.0344 REMARK 3 T13: -0.0596 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 2.9475 L22: 4.8462 REMARK 3 L33: 7.0601 L12: -1.1558 REMARK 3 L13: 0.4779 L23: -5.7256 REMARK 3 S TENSOR REMARK 3 S11: -0.1143 S12: -0.0311 S13: 1.0543 REMARK 3 S21: 0.1914 S22: -0.0441 S23: -0.0896 REMARK 3 S31: -2.2825 S32: 0.3817 S33: 0.0876 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07166 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 35.00 REMARK 200 R MERGE (I) : 0.06612 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 34.80 REMARK 200 R MERGE FOR SHELL (I) : 0.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISODIUM CITRATE PH 6.45 20% REMARK 280 PEG 4000 20 %(V/V) ISOPROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.50667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.25333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.38000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.12667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 125.63333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.50667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 50.25333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.12667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.38000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 125.63333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 458 REMARK 465 ALA A 459 REMARK 465 TYR A 460 REMARK 465 ILE B 720 REMARK 465 LYS B 721 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 374 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 GLU A 385 CD OE1 OE2 REMARK 470 ARG A 396 NE CZ NH1 NH2 REMARK 470 GLU A 418 OE1 OE2 REMARK 470 LYS A 457 CE NZ REMARK 470 LEU B 722 CB CG CD1 CD2 REMARK 470 GLU B 723 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 626 O HOH A 664 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 DBREF 6EZI A 374 460 UNP Q5T2W1 NHRF3_HUMAN 374 460 DBREF 6EZI B 720 729 UNP Q16348 S15A2_HUMAN 720 729 SEQADV 6EZI SER A 372 UNP Q5T2W1 EXPRESSION TAG SEQADV 6EZI MET A 373 UNP Q5T2W1 EXPRESSION TAG SEQRES 1 A 89 SER MET HIS LYS PRO LYS LEU CYS ARG LEU ALA LYS GLY SEQRES 2 A 89 GLU ASN GLY TYR GLY PHE HIS LEU ASN ALA ILE ARG GLY SEQRES 3 A 89 LEU PRO GLY SER PHE ILE LYS GLU VAL GLN LYS GLY GLY SEQRES 4 A 89 PRO ALA ASP LEU ALA GLY LEU GLU ASP GLU ASP VAL ILE SEQRES 5 A 89 ILE GLU VAL ASN GLY VAL ASN VAL LEU ASP GLU PRO TYR SEQRES 6 A 89 GLU LYS VAL VAL ASP ARG ILE GLN SER SER GLY LYS ASN SEQRES 7 A 89 VAL THR LEU LEU VAL CYS GLY LYS LYS ALA TYR SEQRES 1 B 10 ILE LYS LEU GLU THR LYS LYS THR LYS LEU HET GOL A 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *124(H2 O) HELIX 1 AA1 GLY A 410 GLY A 416 1 7 HELIX 2 AA2 PRO A 435 SER A 445 1 11 SHEET 1 AA1 4 PRO A 376 ALA A 382 0 SHEET 2 AA1 4 ASN A 449 CYS A 455 -1 O LEU A 452 N CYS A 379 SHEET 3 AA1 4 VAL A 422 VAL A 426 -1 N ILE A 424 O LEU A 453 SHEET 4 AA1 4 VAL A 429 ASN A 430 -1 O VAL A 429 N VAL A 426 SHEET 1 AA2 3 PHE A 402 LYS A 404 0 SHEET 2 AA2 3 HIS A 391 ILE A 395 -1 N ASN A 393 O PHE A 402 SHEET 3 AA2 3 THR B 724 LYS B 728 -1 O LYS B 725 N ALA A 394 SITE 1 AC1 9 ALA A 394 LEU A 398 GLY A 400 PRO A 435 SITE 2 AC1 9 TYR A 436 HOH A 613 HOH A 620 HOH A 629 SITE 3 AC1 9 LYS B 725 CRYST1 54.400 54.400 150.760 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018382 0.010613 0.000000 0.00000 SCALE2 0.000000 0.021226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006633 0.00000