HEADER CELL CYCLE 17-NOV-17 6F07 TITLE CBF3 CORE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROMERE DNA-BINDING PROTEIN COMPLEX CBF3 SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CENTROMERE PROTEIN 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SUPPRESSOR OF KINETOCHORE PROTEIN 1; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: CENTROMERE DNA-BINDING PROTEIN COMPLEX CBF3 SUBUNIT D,E3 COMPND 10 UBIQUITIN LIGASE COMPLEX SCF SUBUNIT SKP1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CEP3, CBF3, CBF3B, CSL1, YMR168C, YM8520.17C; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: SKP1, CBF3D, YDR328C, D9798.14; SOURCE 13 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS KINETOCHORE, F-BOX, DNA-BINDING, CENTROMERE, CELL CYCLE EXPDTA ELECTRON MICROSCOPY AUTHOR V.LEBER,M.R.SINGLETON REVDAT 5 11-DEC-19 6F07 1 CRYST1 SCALE REVDAT 4 21-NOV-18 6F07 1 REMARK LINK REVDAT 3 31-JAN-18 6F07 1 JRNL REVDAT 2 20-DEC-17 6F07 1 JRNL REVDAT 1 13-DEC-17 6F07 0 JRNL AUTH V.LEBER,A.NANS,M.R.SINGLETON JRNL TITL STRUCTURAL BASIS FOR ASSEMBLY OF THE CBF3 KINETOCHORE JRNL TITL 2 COMPLEX. JRNL REF EMBO J. V. 37 269 2018 JRNL REFN ESSN 1460-2075 JRNL PMID 29212814 JRNL DOI 10.15252/EMBJ.201798134 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : COOT, PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 209751 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6F07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007554. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CBF3 CORE COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2.16 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 HIS A 12 REMARK 465 PRO A 13 REMARK 465 CYS A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 CYS A 17 REMARK 465 THR A 18 REMARK 465 ARG A 19 REMARK 465 ARG A 20 REMARK 465 LYS A 21 REMARK 465 VAL A 22 REMARK 465 LYS A 23 REMARK 465 CYS A 24 REMARK 465 ASP A 25 REMARK 465 ARG A 26 REMARK 465 MET A 27 REMARK 465 ILE A 28 REMARK 465 PRO A 29 REMARK 465 CYS A 30 REMARK 465 GLY A 31 REMARK 465 ASN A 32 REMARK 465 CYS A 33 REMARK 465 ARG A 34 REMARK 465 LYS A 35 REMARK 465 ARG A 36 REMARK 465 GLY A 37 REMARK 465 GLN A 38 REMARK 465 ASP A 39 REMARK 465 SER A 40 REMARK 465 GLU A 41 REMARK 465 CYS A 42 REMARK 465 MET A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 THR A 46 REMARK 465 LYS A 47 REMARK 465 LEU A 48 REMARK 465 ILE A 49 REMARK 465 THR A 50 REMARK 465 ALA A 51 REMARK 465 SER A 52 REMARK 465 SER A 53 REMARK 465 SER A 54 REMARK 465 THR A 314 REMARK 465 GLU A 315 REMARK 465 VAL A 316 REMARK 465 SER A 317 REMARK 465 SER A 318 REMARK 465 LEU A 319 REMARK 465 LEU A 320 REMARK 465 GLN A 321 REMARK 465 HIS A 322 REMARK 465 ALA A 323 REMARK 465 ALA A 324 REMARK 465 TYR A 325 REMARK 465 LEU A 326 REMARK 465 GLN A 327 REMARK 465 ASP A 328 REMARK 465 LEU A 329 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 VAL A 332 REMARK 465 ASP A 333 REMARK 465 VAL A 334 REMARK 465 TYR A 335 REMARK 465 VAL A 566 REMARK 465 PRO A 567 REMARK 465 LEU A 568 REMARK 465 ASN A 569 REMARK 465 LYS A 570 REMARK 465 LEU A 571 REMARK 465 ARG A 572 REMARK 465 GLN A 573 REMARK 465 GLU A 574 REMARK 465 SER A 575 REMARK 465 LEU A 576 REMARK 465 LEU A 577 REMARK 465 GLU A 578 REMARK 465 GLU A 579 REMARK 465 GLU A 580 REMARK 465 ASP A 581 REMARK 465 GLU A 582 REMARK 465 ASN A 583 REMARK 465 ASN A 584 REMARK 465 THR A 585 REMARK 465 GLU A 586 REMARK 465 PRO A 587 REMARK 465 GLY A 609 REMARK 465 SER A 610 REMARK 465 GLY A 611 REMARK 465 GLY A 612 REMARK 465 SER A 613 REMARK 465 GLY A 614 REMARK 465 GLU A 615 REMARK 465 ASN A 616 REMARK 465 LEU A 617 REMARK 465 TYR A 618 REMARK 465 PHE A 619 REMARK 465 GLN A 620 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 GLN B 321 REMARK 465 HIS B 322 REMARK 465 ALA B 323 REMARK 465 ALA B 324 REMARK 465 TYR B 325 REMARK 465 LEU B 326 REMARK 465 GLN B 327 REMARK 465 ASP B 328 REMARK 465 LEU B 329 REMARK 465 PRO B 330 REMARK 465 ASN B 331 REMARK 465 VAL B 332 REMARK 465 ASP B 333 REMARK 465 LYS B 570 REMARK 465 LEU B 571 REMARK 465 ARG B 572 REMARK 465 GLN B 573 REMARK 465 GLU B 574 REMARK 465 SER B 575 REMARK 465 LEU B 576 REMARK 465 LEU B 577 REMARK 465 GLU B 578 REMARK 465 GLU B 579 REMARK 465 GLU B 580 REMARK 465 ASP B 581 REMARK 465 GLU B 582 REMARK 465 ASN B 583 REMARK 465 ASN B 584 REMARK 465 THR B 585 REMARK 465 GLU B 586 REMARK 465 PRO B 587 REMARK 465 GLY B 609 REMARK 465 SER B 610 REMARK 465 GLY B 611 REMARK 465 GLY B 612 REMARK 465 SER B 613 REMARK 465 GLY B 614 REMARK 465 GLU B 615 REMARK 465 ASN B 616 REMARK 465 LEU B 617 REMARK 465 TYR B 618 REMARK 465 PHE B 619 REMARK 465 GLN B 620 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 MET D 36 REMARK 465 HIS D 37 REMARK 465 ASP D 38 REMARK 465 SER D 39 REMARK 465 ASN D 40 REMARK 465 LEU D 41 REMARK 465 GLN D 42 REMARK 465 ASN D 43 REMARK 465 ASN D 44 REMARK 465 SER D 45 REMARK 465 ASP D 46 REMARK 465 SER D 47 REMARK 465 GLU D 48 REMARK 465 SER D 49 REMARK 465 ASP D 50 REMARK 465 SER D 51 REMARK 465 ASP D 52 REMARK 465 SER D 53 REMARK 465 GLU D 54 REMARK 465 THR D 55 REMARK 465 ASN D 56 REMARK 465 HIS D 57 REMARK 465 LYS D 58 REMARK 465 SER D 59 REMARK 465 LYS D 60 REMARK 465 ASP D 61 REMARK 465 ASN D 62 REMARK 465 ASN D 63 REMARK 465 ASN D 64 REMARK 465 GLY D 65 REMARK 465 ASP D 66 REMARK 465 ASP D 67 REMARK 465 ASP D 68 REMARK 465 ASP D 69 REMARK 465 GLU D 70 REMARK 465 ASP D 71 REMARK 465 ASP D 72 REMARK 465 ASP D 73 REMARK 465 GLU D 74 REMARK 465 ASN D 171 REMARK 465 ILE D 172 REMARK 465 VAL D 173 REMARK 465 ASN D 174 REMARK 465 ASN D 188 REMARK 465 GLU D 189 REMARK 465 TRP D 190 REMARK 465 ALA D 191 REMARK 465 GLU D 192 REMARK 465 ASP D 193 REMARK 465 ARG D 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 320 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS B 12 N PHE D 176 0.56 REMARK 500 CB HIS B 12 CG PHE D 176 0.71 REMARK 500 CG HIS B 12 CG PHE D 176 0.87 REMARK 500 CB HIS B 12 CD2 PHE D 176 1.16 REMARK 500 CG HIS B 12 CD1 PHE D 176 1.17 REMARK 500 CD2 HIS B 12 CA PHE D 176 1.17 REMARK 500 CD2 HIS B 12 N PHE D 176 1.25 REMARK 500 CD2 HIS B 12 CB PHE D 176 1.31 REMARK 500 ND1 HIS B 12 CD1 PHE D 176 1.46 REMARK 500 CB HIS B 12 CD1 PHE D 176 1.53 REMARK 500 CG HIS B 12 CB PHE D 176 1.57 REMARK 500 NE2 HIS B 12 C ASP D 175 1.59 REMARK 500 CD PRO B 13 CZ PHE D 176 1.82 REMARK 500 CA HIS B 12 CD1 PHE D 176 1.83 REMARK 500 CG GLN B 381 OD1 ASN D 31 1.84 REMARK 500 CE1 HIS B 12 N PHE D 176 1.85 REMARK 500 NE2 HIS B 12 CA PHE D 176 1.88 REMARK 500 CB HIS B 12 CB PHE D 176 1.96 REMARK 500 CD2 HIS B 12 CG PHE D 176 1.96 REMARK 500 CA HIS B 12 CE1 PHE D 176 2.03 REMARK 500 ND1 HIS B 12 CG PHE D 176 2.03 REMARK 500 CB HIS B 12 CE2 PHE D 176 2.05 REMARK 500 CA HIS B 12 CG PHE D 176 2.09 REMARK 500 ND1 HIS B 12 CE1 PHE D 176 2.10 REMARK 500 CG HIS B 12 CD2 PHE D 176 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 129 -60.07 -102.59 REMARK 500 SER A 153 -165.20 -126.38 REMARK 500 ASP A 270 -60.55 -91.61 REMARK 500 ASN A 277 31.11 -92.50 REMARK 500 LYS A 308 88.45 -159.83 REMARK 500 SER A 450 18.44 -141.60 REMARK 500 ASN A 552 41.93 -103.50 REMARK 500 ARG B 4 136.09 -14.46 REMARK 500 GLN B 7 135.22 173.06 REMARK 500 LEU B 8 77.43 61.50 REMARK 500 SER B 10 80.58 59.95 REMARK 500 GLN B 38 38.62 -98.50 REMARK 500 ILE B 72 -58.95 -122.49 REMARK 500 ASN B 74 -63.21 -94.15 REMARK 500 LEU B 125 -61.02 -91.94 REMARK 500 SER B 129 -60.37 -91.02 REMARK 500 ALA B 241 30.94 -93.26 REMARK 500 PRO B 246 3.53 -66.51 REMARK 500 HIS B 313 53.39 30.51 REMARK 500 SER B 318 18.21 -142.44 REMARK 500 SER B 340 -75.62 -83.48 REMARK 500 THR B 341 -31.90 -140.13 REMARK 500 SER B 386 32.33 -93.53 REMARK 500 HIS B 447 -167.85 -78.19 REMARK 500 LYS B 449 -7.40 72.66 REMARK 500 SER B 529 18.18 -140.46 REMARK 500 GLN B 542 49.96 -96.64 REMARK 500 ASN B 543 -29.18 -143.46 REMARK 500 ASN D 34 30.90 -85.22 REMARK 500 ASN D 81 19.94 59.75 REMARK 500 ASP D 104 -74.19 -119.08 REMARK 500 GLU D 105 -42.28 -141.67 REMARK 500 ARG D 167 36.00 -93.15 REMARK 500 THR D 169 73.58 57.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 8 LYS B 9 -149.13 REMARK 500 LEU B 312 HIS B 313 142.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 14 N REMARK 620 2 CYS B 14 O 78.4 REMARK 620 3 CYS B 14 SG 89.4 91.2 REMARK 620 4 CYS B 24 SG 90.1 163.8 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 14 SG REMARK 620 2 CYS B 30 SG 92.6 REMARK 620 3 CYS B 33 SG 131.8 101.0 REMARK 620 4 CYS B 42 SG 95.5 106.6 123.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-4163 RELATED DB: EMDB REMARK 900 CBF3 CORE COMPLEX DBREF 6F07 A 1 608 UNP P40969 CBF3B_YEAST 1 608 DBREF 6F07 B 1 608 UNP P40969 CBF3B_YEAST 1 608 DBREF 6F07 D 1 194 UNP P52286 SKP1_YEAST 1 194 SEQADV 6F07 GLY A 609 UNP P40969 EXPRESSION TAG SEQADV 6F07 SER A 610 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLY A 611 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLY A 612 UNP P40969 EXPRESSION TAG SEQADV 6F07 SER A 613 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLY A 614 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLU A 615 UNP P40969 EXPRESSION TAG SEQADV 6F07 ASN A 616 UNP P40969 EXPRESSION TAG SEQADV 6F07 LEU A 617 UNP P40969 EXPRESSION TAG SEQADV 6F07 TYR A 618 UNP P40969 EXPRESSION TAG SEQADV 6F07 PHE A 619 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLN A 620 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLY B 609 UNP P40969 EXPRESSION TAG SEQADV 6F07 SER B 610 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLY B 611 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLY B 612 UNP P40969 EXPRESSION TAG SEQADV 6F07 SER B 613 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLY B 614 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLU B 615 UNP P40969 EXPRESSION TAG SEQADV 6F07 ASN B 616 UNP P40969 EXPRESSION TAG SEQADV 6F07 LEU B 617 UNP P40969 EXPRESSION TAG SEQADV 6F07 TYR B 618 UNP P40969 EXPRESSION TAG SEQADV 6F07 PHE B 619 UNP P40969 EXPRESSION TAG SEQADV 6F07 GLN B 620 UNP P40969 EXPRESSION TAG SEQRES 1 A 620 MET PHE ASN ARG THR THR GLN LEU LYS SER LYS HIS PRO SEQRES 2 A 620 CYS SER VAL CYS THR ARG ARG LYS VAL LYS CYS ASP ARG SEQRES 3 A 620 MET ILE PRO CYS GLY ASN CYS ARG LYS ARG GLY GLN ASP SEQRES 4 A 620 SER GLU CYS MET LYS SER THR LYS LEU ILE THR ALA SER SEQRES 5 A 620 SER SER LYS GLU TYR LEU PRO ASP LEU LEU LEU PHE TRP SEQRES 6 A 620 GLN ASN TYR GLU TYR TRP ILE THR ASN ILE GLY LEU TYR SEQRES 7 A 620 LYS THR LYS GLN ARG ASP LEU THR ARG THR PRO ALA ASN SEQRES 8 A 620 LEU ASP THR ASP THR GLU GLU CYS MET PHE TRP MET ASN SEQRES 9 A 620 TYR LEU GLN LYS ASP GLN SER PHE GLN LEU MET ASN PHE SEQRES 10 A 620 ALA MET GLU ASN LEU GLY ALA LEU TYR PHE GLY SER ILE SEQRES 11 A 620 GLY ASP ILE SER GLU LEU TYR LEU ARG VAL GLU GLN TYR SEQRES 12 A 620 TRP ASP ARG ARG ALA ASP LYS ASN HIS SER VAL ASP GLY SEQRES 13 A 620 LYS TYR TRP ASP ALA LEU ILE TRP SER VAL PHE THR MET SEQRES 14 A 620 CYS ILE TYR TYR MET PRO VAL GLU LYS LEU ALA GLU ILE SEQRES 15 A 620 PHE SER VAL TYR PRO LEU HIS GLU TYR LEU GLY SER ASN SEQRES 16 A 620 LYS ARG LEU ASN TRP GLU ASP GLY MET GLN LEU VAL MET SEQRES 17 A 620 CYS GLN ASN PHE ALA ARG CYS SER LEU PHE GLN LEU LYS SEQRES 18 A 620 GLN CYS ASP PHE MET ALA HIS PRO ASP ILE ARG LEU VAL SEQRES 19 A 620 GLN ALA TYR LEU ILE LEU ALA THR THR THR PHE PRO TYR SEQRES 20 A 620 ASP GLU PRO LEU LEU ALA ASN SER LEU LEU THR GLN CYS SEQRES 21 A 620 ILE HIS THR PHE LYS ASN PHE HIS VAL ASP ASP PHE ARG SEQRES 22 A 620 PRO LEU LEU ASN ASP ASP PRO VAL GLU SER ILE ALA LYS SEQRES 23 A 620 VAL THR LEU GLY ARG ILE PHE TYR ARG LEU CYS GLY CYS SEQRES 24 A 620 ASP TYR LEU GLN SER GLY PRO ARG LYS PRO ILE ALA LEU SEQRES 25 A 620 HIS THR GLU VAL SER SER LEU LEU GLN HIS ALA ALA TYR SEQRES 26 A 620 LEU GLN ASP LEU PRO ASN VAL ASP VAL TYR ARG GLU GLU SEQRES 27 A 620 ASN SER THR GLU VAL LEU TYR TRP LYS ILE ILE SER LEU SEQRES 28 A 620 ASP ARG ASP LEU ASP GLN TYR LEU ASN LYS SER SER LYS SEQRES 29 A 620 PRO PRO LEU LYS THR LEU ASP ALA ILE ARG ARG GLU LEU SEQRES 30 A 620 ASP ILE PHE GLN TYR LYS VAL ASP SER LEU GLU GLU ASP SEQRES 31 A 620 PHE ARG SER ASN ASN SER ARG PHE GLN LYS PHE ILE ALA SEQRES 32 A 620 LEU PHE GLN ILE SER THR VAL SER TRP LYS LEU PHE LYS SEQRES 33 A 620 MET TYR LEU ILE TYR TYR ASP THR ALA ASP SER LEU LEU SEQRES 34 A 620 LYS VAL ILE HIS TYR SER LYS VAL ILE ILE SER LEU ILE SEQRES 35 A 620 VAL ASN ASN PHE HIS ALA LYS SER GLU PHE PHE ASN ARG SEQRES 36 A 620 HIS PRO MET VAL MET GLN THR ILE THR ARG VAL VAL SER SEQRES 37 A 620 PHE ILE SER PHE TYR GLN ILE PHE VAL GLU SER ALA ALA SEQRES 38 A 620 VAL LYS GLN LEU LEU VAL ASP LEU THR GLU LEU THR ALA SEQRES 39 A 620 ASN LEU PRO THR ILE PHE GLY SER LYS LEU ASP LYS LEU SEQRES 40 A 620 VAL TYR LEU THR GLU ARG LEU SER LYS LEU LYS LEU LEU SEQRES 41 A 620 TRP ASP LYS VAL GLN LEU LEU ASP SER GLY ASP SER PHE SEQRES 42 A 620 TYR HIS PRO VAL PHE LYS ILE LEU GLN ASN ASP ILE LYS SEQRES 43 A 620 ILE ILE GLU LEU LYS ASN ASP GLU MET PHE SER LEU ILE SEQRES 44 A 620 LYS GLY LEU GLY SER LEU VAL PRO LEU ASN LYS LEU ARG SEQRES 45 A 620 GLN GLU SER LEU LEU GLU GLU GLU ASP GLU ASN ASN THR SEQRES 46 A 620 GLU PRO SER ASP PHE ARG THR ILE VAL GLU GLU PHE GLN SEQRES 47 A 620 SER GLU TYR ASN ILE SER ASP ILE LEU SER GLY SER GLY SEQRES 48 A 620 GLY SER GLY GLU ASN LEU TYR PHE GLN SEQRES 1 B 620 MET PHE ASN ARG THR THR GLN LEU LYS SER LYS HIS PRO SEQRES 2 B 620 CYS SER VAL CYS THR ARG ARG LYS VAL LYS CYS ASP ARG SEQRES 3 B 620 MET ILE PRO CYS GLY ASN CYS ARG LYS ARG GLY GLN ASP SEQRES 4 B 620 SER GLU CYS MET LYS SER THR LYS LEU ILE THR ALA SER SEQRES 5 B 620 SER SER LYS GLU TYR LEU PRO ASP LEU LEU LEU PHE TRP SEQRES 6 B 620 GLN ASN TYR GLU TYR TRP ILE THR ASN ILE GLY LEU TYR SEQRES 7 B 620 LYS THR LYS GLN ARG ASP LEU THR ARG THR PRO ALA ASN SEQRES 8 B 620 LEU ASP THR ASP THR GLU GLU CYS MET PHE TRP MET ASN SEQRES 9 B 620 TYR LEU GLN LYS ASP GLN SER PHE GLN LEU MET ASN PHE SEQRES 10 B 620 ALA MET GLU ASN LEU GLY ALA LEU TYR PHE GLY SER ILE SEQRES 11 B 620 GLY ASP ILE SER GLU LEU TYR LEU ARG VAL GLU GLN TYR SEQRES 12 B 620 TRP ASP ARG ARG ALA ASP LYS ASN HIS SER VAL ASP GLY SEQRES 13 B 620 LYS TYR TRP ASP ALA LEU ILE TRP SER VAL PHE THR MET SEQRES 14 B 620 CYS ILE TYR TYR MET PRO VAL GLU LYS LEU ALA GLU ILE SEQRES 15 B 620 PHE SER VAL TYR PRO LEU HIS GLU TYR LEU GLY SER ASN SEQRES 16 B 620 LYS ARG LEU ASN TRP GLU ASP GLY MET GLN LEU VAL MET SEQRES 17 B 620 CYS GLN ASN PHE ALA ARG CYS SER LEU PHE GLN LEU LYS SEQRES 18 B 620 GLN CYS ASP PHE MET ALA HIS PRO ASP ILE ARG LEU VAL SEQRES 19 B 620 GLN ALA TYR LEU ILE LEU ALA THR THR THR PHE PRO TYR SEQRES 20 B 620 ASP GLU PRO LEU LEU ALA ASN SER LEU LEU THR GLN CYS SEQRES 21 B 620 ILE HIS THR PHE LYS ASN PHE HIS VAL ASP ASP PHE ARG SEQRES 22 B 620 PRO LEU LEU ASN ASP ASP PRO VAL GLU SER ILE ALA LYS SEQRES 23 B 620 VAL THR LEU GLY ARG ILE PHE TYR ARG LEU CYS GLY CYS SEQRES 24 B 620 ASP TYR LEU GLN SER GLY PRO ARG LYS PRO ILE ALA LEU SEQRES 25 B 620 HIS THR GLU VAL SER SER LEU LEU GLN HIS ALA ALA TYR SEQRES 26 B 620 LEU GLN ASP LEU PRO ASN VAL ASP VAL TYR ARG GLU GLU SEQRES 27 B 620 ASN SER THR GLU VAL LEU TYR TRP LYS ILE ILE SER LEU SEQRES 28 B 620 ASP ARG ASP LEU ASP GLN TYR LEU ASN LYS SER SER LYS SEQRES 29 B 620 PRO PRO LEU LYS THR LEU ASP ALA ILE ARG ARG GLU LEU SEQRES 30 B 620 ASP ILE PHE GLN TYR LYS VAL ASP SER LEU GLU GLU ASP SEQRES 31 B 620 PHE ARG SER ASN ASN SER ARG PHE GLN LYS PHE ILE ALA SEQRES 32 B 620 LEU PHE GLN ILE SER THR VAL SER TRP LYS LEU PHE LYS SEQRES 33 B 620 MET TYR LEU ILE TYR TYR ASP THR ALA ASP SER LEU LEU SEQRES 34 B 620 LYS VAL ILE HIS TYR SER LYS VAL ILE ILE SER LEU ILE SEQRES 35 B 620 VAL ASN ASN PHE HIS ALA LYS SER GLU PHE PHE ASN ARG SEQRES 36 B 620 HIS PRO MET VAL MET GLN THR ILE THR ARG VAL VAL SER SEQRES 37 B 620 PHE ILE SER PHE TYR GLN ILE PHE VAL GLU SER ALA ALA SEQRES 38 B 620 VAL LYS GLN LEU LEU VAL ASP LEU THR GLU LEU THR ALA SEQRES 39 B 620 ASN LEU PRO THR ILE PHE GLY SER LYS LEU ASP LYS LEU SEQRES 40 B 620 VAL TYR LEU THR GLU ARG LEU SER LYS LEU LYS LEU LEU SEQRES 41 B 620 TRP ASP LYS VAL GLN LEU LEU ASP SER GLY ASP SER PHE SEQRES 42 B 620 TYR HIS PRO VAL PHE LYS ILE LEU GLN ASN ASP ILE LYS SEQRES 43 B 620 ILE ILE GLU LEU LYS ASN ASP GLU MET PHE SER LEU ILE SEQRES 44 B 620 LYS GLY LEU GLY SER LEU VAL PRO LEU ASN LYS LEU ARG SEQRES 45 B 620 GLN GLU SER LEU LEU GLU GLU GLU ASP GLU ASN ASN THR SEQRES 46 B 620 GLU PRO SER ASP PHE ARG THR ILE VAL GLU GLU PHE GLN SEQRES 47 B 620 SER GLU TYR ASN ILE SER ASP ILE LEU SER GLY SER GLY SEQRES 48 B 620 GLY SER GLY GLU ASN LEU TYR PHE GLN SEQRES 1 D 194 MET VAL THR SER ASN VAL VAL LEU VAL SER GLY GLU GLY SEQRES 2 D 194 GLU ARG PHE THR VAL ASP LYS LYS ILE ALA GLU ARG SER SEQRES 3 D 194 LEU LEU LEU LYS ASN TYR LEU ASN ASP MET HIS ASP SER SEQRES 4 D 194 ASN LEU GLN ASN ASN SER ASP SER GLU SER ASP SER ASP SEQRES 5 D 194 SER GLU THR ASN HIS LYS SER LYS ASP ASN ASN ASN GLY SEQRES 6 D 194 ASP ASP ASP ASP GLU ASP ASP ASP GLU ILE VAL MET PRO SEQRES 7 D 194 VAL PRO ASN VAL ARG SER SER VAL LEU GLN LYS VAL ILE SEQRES 8 D 194 GLU TRP ALA GLU HIS HIS ARG ASP SER ASN PHE PRO ASP SEQRES 9 D 194 GLU ASP ASP ASP ASP SER ARG LYS SER ALA PRO VAL ASP SEQRES 10 D 194 SER TRP ASP ARG GLU PHE LEU LYS VAL ASP GLN GLU MET SEQRES 11 D 194 LEU TYR GLU ILE ILE LEU ALA ALA ASN TYR LEU ASN ILE SEQRES 12 D 194 LYS PRO LEU LEU ASP ALA GLY CYS LYS VAL VAL ALA GLU SEQRES 13 D 194 MET ILE ARG GLY ARG SER PRO GLU GLU ILE ARG ARG THR SEQRES 14 D 194 PHE ASN ILE VAL ASN ASP PHE THR PRO GLU GLU GLU ALA SEQRES 15 D 194 ALA ILE ARG ARG GLU ASN GLU TRP ALA GLU ASP ARG HET ZN B 701 1 HET ZN B 702 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) HELIX 1 AA1 TYR A 57 THR A 73 1 17 HELIX 2 AA2 ASP A 95 TYR A 105 1 11 HELIX 3 AA3 GLN A 107 LEU A 122 1 16 HELIX 4 AA4 LEU A 122 PHE A 127 1 6 HELIX 5 AA5 GLU A 135 ARG A 146 1 12 HELIX 6 AA6 VAL A 154 TYR A 173 1 20 HELIX 7 AA7 PRO A 175 PHE A 183 1 9 HELIX 8 AA8 VAL A 185 LEU A 192 1 8 HELIX 9 AA9 GLY A 203 CYS A 223 1 21 HELIX 10 AB1 ILE A 231 ALA A 241 1 11 HELIX 11 AB2 THR A 242 THR A 243 5 2 HELIX 12 AB3 THR A 244 ASP A 248 5 5 HELIX 13 AB4 GLU A 249 ASN A 266 1 18 HELIX 14 AB5 ASP A 279 LEU A 302 1 24 HELIX 15 AB6 GLU A 338 GLN A 357 1 20 HELIX 16 AB7 PRO A 366 SER A 386 1 21 HELIX 17 AB8 SER A 393 TYR A 422 1 30 HELIX 18 AB9 ASP A 426 ASN A 444 1 19 HELIX 19 AC1 ASN A 445 HIS A 447 5 3 HELIX 20 AC2 GLU A 451 ARG A 455 5 5 HELIX 21 AC3 HIS A 456 VAL A 477 1 22 HELIX 22 AC4 SER A 479 ALA A 494 1 16 HELIX 23 AC5 ASN A 495 LEU A 496 5 2 HELIX 24 AC6 PRO A 497 ILE A 499 5 3 HELIX 25 AC7 PHE A 500 LYS A 523 1 24 HELIX 26 AC8 HIS A 535 ASN A 552 1 18 HELIX 27 AC9 GLU A 554 GLY A 563 1 10 HELIX 28 AD1 ASP A 589 TYR A 601 1 13 HELIX 29 AD2 ILE A 603 LEU A 607 5 5 HELIX 30 AD3 CYS B 14 ARG B 20 1 7 HELIX 31 AD4 ASN B 32 GLY B 37 1 6 HELIX 32 AD5 GLN B 38 LYS B 44 1 7 HELIX 33 AD6 TYR B 57 ILE B 72 1 16 HELIX 34 AD7 ASN B 74 LYS B 79 1 6 HELIX 35 AD8 ASP B 95 TYR B 105 1 11 HELIX 36 AD9 GLN B 107 LEU B 122 1 16 HELIX 37 AE1 LEU B 122 PHE B 127 1 6 HELIX 38 AE2 ILE B 133 ARG B 146 1 14 HELIX 39 AE3 SER B 153 TYR B 173 1 21 HELIX 40 AE4 PRO B 175 PHE B 183 1 9 HELIX 41 AE5 VAL B 185 LEU B 192 1 8 HELIX 42 AE6 ASN B 199 ASP B 202 5 4 HELIX 43 AE7 GLY B 203 CYS B 223 1 21 HELIX 44 AE8 ASP B 224 HIS B 228 5 5 HELIX 45 AE9 ASP B 230 ALA B 241 1 12 HELIX 46 AF1 THR B 244 GLU B 249 1 6 HELIX 47 AF2 GLU B 249 ASN B 266 1 18 HELIX 48 AF3 ASP B 279 LEU B 302 1 24 HELIX 49 AF4 THR B 341 GLN B 357 1 17 HELIX 50 AF5 PRO B 366 SER B 386 1 21 HELIX 51 AF6 SER B 393 TYR B 422 1 30 HELIX 52 AF7 ASP B 426 ASN B 444 1 19 HELIX 53 AF8 GLU B 451 ARG B 455 5 5 HELIX 54 AF9 HIS B 456 VAL B 477 1 22 HELIX 55 AG1 SER B 479 ALA B 494 1 16 HELIX 56 AG2 ASN B 495 LEU B 496 5 2 HELIX 57 AG3 PRO B 497 ILE B 499 5 3 HELIX 58 AG4 PHE B 500 LYS B 523 1 24 HELIX 59 AG5 HIS B 535 ASN B 552 1 18 HELIX 60 AG6 GLU B 554 GLY B 563 1 10 HELIX 61 AG7 ASP B 589 TYR B 601 1 13 HELIX 62 AG8 ASN B 602 ILE B 606 5 5 HELIX 63 AG9 ASP D 19 GLU D 24 1 6 HELIX 64 AH1 SER D 26 ASN D 34 1 9 HELIX 65 AH2 ARG D 83 HIS D 97 1 15 HELIX 66 AH3 ASP D 107 LYS D 112 1 6 HELIX 67 AH4 ASP D 117 LEU D 124 1 8 HELIX 68 AH5 ASP D 127 ASN D 142 1 16 HELIX 69 AH6 ILE D 143 ARG D 159 1 17 HELIX 70 AH7 THR D 177 GLU D 187 1 11 SHEET 1 AA1 2 LEU A 527 ASP A 528 0 SHEET 2 AA1 2 PHE A 533 TYR A 534 -1 O TYR A 534 N LEU A 527 SHEET 1 AA2 3 ARG D 15 VAL D 18 0 SHEET 2 AA2 3 VAL D 6 VAL D 9 -1 N VAL D 6 O VAL D 18 SHEET 3 AA2 3 VAL D 76 PRO D 78 1 O MET D 77 N VAL D 7 SSBOND 1 CYS B 99 CYS B 215 1555 1555 2.03 LINK N CYS B 14 ZN ZN B 701 1555 1555 2.22 LINK O CYS B 14 ZN ZN B 701 1555 1555 2.15 LINK SG CYS B 14 ZN ZN B 701 1555 1555 2.43 LINK SG CYS B 14 ZN ZN B 702 1555 1555 2.47 LINK SG CYS B 24 ZN ZN B 701 1555 1555 2.45 LINK SG CYS B 30 ZN ZN B 702 1555 1555 2.47 LINK SG CYS B 33 ZN ZN B 702 1555 1555 2.46 LINK SG CYS B 42 ZN ZN B 702 1555 1555 2.46 CISPEP 1 ILE B 28 PRO B 29 0 -10.41 CISPEP 2 PRO D 103 ASP D 104 0 -25.40 CISPEP 3 LYS D 112 SER D 113 0 19.80 SITE 1 AC1 4 PRO B 13 CYS B 14 CYS B 17 CYS B 24 SITE 1 AC2 4 CYS B 14 CYS B 30 CYS B 33 CYS B 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000