HEADER HYDROLASE 24-NOV-17 6F2I TITLE CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME CO-CRYSTALLIZED IN TITLE 2 PRESENCE OF 100 MM TB-XO4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS NUCLEATION, PHASING, LANTHANIDE COMPLEXES, TB-XO4, CRYSTALLOPHORE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ENGILBERGE,F.RIOBE,S.DI PIETRO,E.GIRARD,E.DUMONT,O.MAURY REVDAT 4 17-JAN-24 6F2I 1 LINK REVDAT 3 16-OCT-19 6F2I 1 REMARK REVDAT 2 29-MAY-19 6F2I 1 COMPND HETNAM REVDAT 1 03-OCT-18 6F2I 0 JRNL AUTH S.ENGILBERGE,F.RIOBE,T.WAGNER,S.DI PIETRO,C.BREYTON, JRNL AUTH 2 B.FRANZETTI,S.SHIMA,E.GIRARD,E.DUMONT,O.MAURY JRNL TITL UNVEILING THE BINDING MODES OF THE CRYSTALLOPHORE, A JRNL TITL 2 TERBIUM-BASED NUCLEATING AND PHASING MOLECULAR AGENT FOR JRNL TITL 3 PROTEIN CRYSTALLOGRAPHY. JRNL REF CHEMISTRY V. 24 9739 2018 JRNL REFN ISSN 1521-3765 JRNL PMID 29806881 JRNL DOI 10.1002/CHEM.201802172 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1859 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2777 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2564 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2638 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.2622 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 139 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35750 REMARK 3 B22 (A**2) : 0.35750 REMARK 3 B33 (A**2) : -0.71500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.150 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.045 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.046 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.044 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.043 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2126 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3802 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 441 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 28 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 325 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2126 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 8 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 134 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2528 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.32 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -0.9010 20.1388 19.0160 REMARK 3 T TENSOR REMARK 3 T11: -0.0706 T22: -0.0456 REMARK 3 T33: -0.0339 T12: 0.0016 REMARK 3 T13: 0.0047 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.0199 L22: 1.2971 REMARK 3 L33: 0.6179 L12: -0.3287 REMARK 3 L13: 0.0444 L23: -0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0552 S13: -0.0477 REMARK 3 S21: 0.0461 S22: -0.0369 S23: 0.1061 REMARK 3 S31: -0.0077 S32: -0.0313 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|202-203 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.7043 26.7180 37.5154 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: -0.0193 REMARK 3 T33: -0.0283 T12: 0.0345 REMARK 3 T13: 0.0088 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.0171 L22: 0.0000 REMARK 3 L33: 0.0199 L12: -0.0688 REMARK 3 L13: -0.0825 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.0005 S13: -0.0023 REMARK 3 S21: -0.0026 S22: -0.0021 S23: -0.0060 REMARK 3 S31: -0.0050 S32: 0.0115 S33: 0.0035 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37176 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6, 0.2 TO REMARK 280 0.8 M CHLORURE DE SODIUM. TB-XO4 WAS DIRECTLY MIXED WITH THE REMARK 280 PROTEIN SOLUTION AT A FINAL CONCENTRATION OF 100 MM PRIOR TO REMARK 280 CRYSTALLIZATION., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.98000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.07450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.07450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.47000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.07450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.07450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.49000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.07450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.07450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.47000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.07450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.07450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.49000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 90.0 REMARK 620 3 SER A 72 OG 87.6 168.8 REMARK 620 4 ARG A 73 O 90.0 93.6 97.3 REMARK 620 5 HOH A 366 O 100.9 88.0 81.7 169.0 REMARK 620 6 HOH A 404 O 171.7 98.3 84.2 89.9 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT A 202 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD1 REMARK 620 2 7MT A 202 N23 77.4 REMARK 620 3 7MT A 202 N02 169.2 93.5 REMARK 620 4 7MT A 202 N06 121.1 132.6 69.3 REMARK 620 5 7MT A 202 N09 110.4 65.9 70.2 66.6 REMARK 620 6 7MT A 202 O26 78.4 67.5 92.8 152.0 128.8 REMARK 620 7 7MT A 202 N17 118.4 128.3 62.8 83.8 130.9 68.6 REMARK 620 8 7MT A 202 O27 78.3 143.9 106.9 83.1 148.8 81.8 47.4 REMARK 620 9 ASP A 101 OD2 53.2 98.9 135.2 70.7 76.1 131.6 130.9 87.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 7MT A 203 N09 REMARK 620 2 7MT A 203 N23 57.2 REMARK 620 3 HOH A 377 O 156.1 124.6 REMARK 620 4 HOH A 461 O 109.7 107.1 46.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT A 203 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 7MT A 202 O25 REMARK 620 2 7MT A 203 N23 71.4 REMARK 620 3 7MT A 203 N02 72.5 116.2 REMARK 620 4 7MT A 203 N06 139.6 117.8 68.4 REMARK 620 5 7MT A 203 N09 89.7 60.3 68.9 67.1 REMARK 620 6 7MT A 203 O26 75.3 67.6 143.6 145.0 127.9 REMARK 620 7 7MT A 203 N17 83.6 153.6 61.4 86.6 129.5 98.6 REMARK 620 8 7MT A 203 O27 113.2 133.4 108.7 89.1 155.6 69.3 50.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 209 DBREF 6F2I A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET TB A 201 1 HET 7MT A 202 53 HET 7MT A 203 53 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET CL A 207 1 HET NA A 208 1 HET ACT A 209 7 HETNAM TB TERBIUM(III) ION HETNAM 7MT TB-XO4 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 2 TB TB 3+ FORMUL 3 7MT 2(C20 H23 N5 O4 TB 5+) FORMUL 5 CL 4(CL 1-) FORMUL 9 NA NA 1+ FORMUL 10 ACT C2 H3 O2 1- FORMUL 11 HOH *190(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.03 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK O SER A 60 NA NA A 208 1555 1555 2.34 LINK O CYS A 64 NA NA A 208 1555 1555 2.37 LINK OG SER A 72 NA NA A 208 1555 1555 2.50 LINK O ARG A 73 NA NA A 208 1555 1555 2.43 LINK OD1 ASP A 101 TB 7MT A 202 1555 1555 2.54 LINK OD2 ASP A 101 TB 7MT A 202 1555 1555 2.35 LINK TB TB A 201 N09 7MT A 203 1555 1555 2.25 LINK TB TB A 201 N23 7MT A 203 1555 1555 3.16 LINK TB TB A 201 O HOH A 377 1555 1555 3.48 LINK TB TB A 201 O HOH A 461 1555 1555 3.36 LINK O25 7MT A 202 TB 7MT A 203 1555 1555 2.29 LINK NA NA A 208 O HOH A 366 1555 1555 2.49 LINK NA NA A 208 O HOH A 404 1555 1555 2.44 SITE 1 AC1 2 7MT A 202 7MT A 203 SITE 1 AC2 6 TRP A 62 ASP A 101 ARG A 125 TB A 201 SITE 2 AC2 6 7MT A 203 HOH A 368 SITE 1 AC3 9 ARG A 5 LYS A 33 GLY A 117 THR A 118 SITE 2 AC3 9 ASP A 119 ALA A 122 TRP A 123 TB A 201 SITE 3 AC3 9 7MT A 202 SITE 1 AC4 4 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 1 AC5 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC6 3 ILE A 88 HOH A 373 HOH A 460 SITE 1 AC7 3 TYR A 23 ASN A 113 HOH A 399 SITE 1 AC8 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC8 6 HOH A 366 HOH A 404 SITE 1 AC9 6 ILE A 58 ASN A 59 TRP A 63 ALA A 107 SITE 2 AC9 6 TRP A 108 HOH A 316 CRYST1 78.149 78.149 37.960 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012796 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026344 0.00000