HEADER HYDROLASE 24-NOV-17 6F2J TITLE CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME CO-CRYSTALLIZED IN TITLE 2 PRESENCE OF 100 MM TB-XO4 AND 100 MM SODIUM SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS TB-XO4, NUCLEATION, PHASING, CRYSTALLOPHORE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ENGILBERGE,F.RIOBE,S.DI PIETRO,E.GIRARD,E.DUMONT,O.MAURY REVDAT 3 17-JAN-24 6F2J 1 LINK REVDAT 2 29-MAY-19 6F2J 1 COMPND HETNAM REVDAT 1 03-OCT-18 6F2J 0 JRNL AUTH S.ENGILBERGE,F.RIOBE,T.WAGNER,S.DI PIETRO,C.BREYTON, JRNL AUTH 2 B.FRANZETTI,S.SHIMA,E.GIRARD,E.DUMONT,O.MAURY JRNL TITL UNVEILING THE BINDING MODES OF THE CRYSTALLOPHORE, A JRNL TITL 2 TERBIUM-BASED NUCLEATING AND PHASING MOLECULAR AGENT FOR JRNL TITL 3 PROTEIN CRYSTALLOGRAPHY. JRNL REF CHEMISTRY V. 24 9739 2018 JRNL REFN ISSN 1521-3765 JRNL PMID 29806881 JRNL DOI 10.1002/CHEM.201802172 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.29 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2696 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1970 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2561 REMARK 3 BIN R VALUE (WORKING SET) : 0.1961 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80590 REMARK 3 B22 (A**2) : 0.80590 REMARK 3 B33 (A**2) : -1.61170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.140 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.054 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.054 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.053 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.049 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2144 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3841 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 447 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 29 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 325 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2144 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 8 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 136 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2617 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|14 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.9627 15.5159 9.6944 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0877 REMARK 3 T33: 0.1009 T12: -0.0012 REMARK 3 T13: -0.0331 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.4750 L22: 0.7630 REMARK 3 L33: 0.4407 L12: 0.5087 REMARK 3 L13: 0.2820 L23: 0.3463 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: 0.1019 S13: 0.0000 REMARK 3 S21: -0.0441 S22: -0.0505 S23: 0.1669 REMARK 3 S31: 0.0550 S32: -0.0070 S33: 0.0068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|15 - A|24 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.7735 23.4225 20.6898 REMARK 3 T TENSOR REMARK 3 T11: 0.0405 T22: 0.0756 REMARK 3 T33: 0.1235 T12: -0.0084 REMARK 3 T13: 0.0335 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 0.2383 L22: 0.3485 REMARK 3 L33: 0.4561 L12: -0.0437 REMARK 3 L13: 0.1512 L23: -0.1761 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0310 S13: -0.0497 REMARK 3 S21: 0.0352 S22: 0.0990 S23: 0.0920 REMARK 3 S31: -0.0328 S32: -0.0459 S33: -0.1120 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|25 - A|42 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.0541 21.3286 12.7268 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: 0.0494 REMARK 3 T33: 0.0576 T12: 0.0087 REMARK 3 T13: -0.0103 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.5216 L22: 0.7574 REMARK 3 L33: 1.0723 L12: -0.0416 REMARK 3 L13: 0.3321 L23: 0.0765 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: 0.0660 S13: -0.0408 REMARK 3 S21: 0.0047 S22: -0.0492 S23: 0.0161 REMARK 3 S31: -0.0382 S32: 0.0319 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|43 - A|50 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.0369 19.4553 23.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0998 REMARK 3 T33: 0.1068 T12: 0.0054 REMARK 3 T13: -0.0432 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.2520 L22: 0.0004 REMARK 3 L33: 0.0011 L12: 0.0513 REMARK 3 L13: -0.0281 L23: 0.0857 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.0954 S13: -0.0398 REMARK 3 S21: 0.1238 S22: -0.0203 S23: -0.0701 REMARK 3 S31: -0.0981 S32: -0.0131 S33: 0.0442 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|51 - A|68 } REMARK 3 ORIGIN FOR THE GROUP (A): 6.7215 16.4898 25.8586 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0609 REMARK 3 T33: 0.0635 T12: 0.0322 REMARK 3 T13: -0.0184 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.0131 L22: 0.5730 REMARK 3 L33: 0.6558 L12: 0.3079 REMARK 3 L13: -0.7705 L23: 0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: -0.0419 S13: -0.0700 REMARK 3 S21: 0.1002 S22: 0.0028 S23: -0.0573 REMARK 3 S31: -0.0311 S32: -0.0558 S33: 0.0584 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|69 - A|88 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.7641 11.5911 26.4466 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0808 REMARK 3 T33: 0.0866 T12: 0.0248 REMARK 3 T13: 0.0111 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.6715 L22: 1.2357 REMARK 3 L33: 0.2142 L12: -0.3007 REMARK 3 L13: 0.0645 L23: -0.8491 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: -0.1327 S13: -0.1580 REMARK 3 S21: 0.0826 S22: 0.0376 S23: 0.1001 REMARK 3 S31: -0.0047 S32: -0.0276 S33: 0.0326 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|89 - A|108 } REMARK 3 ORIGIN FOR THE GROUP (A): -3.8765 21.9873 25.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0595 REMARK 3 T33: 0.0674 T12: 0.0186 REMARK 3 T13: 0.0179 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.3794 L22: 0.4132 REMARK 3 L33: 0.5914 L12: -0.7206 REMARK 3 L13: 0.2779 L23: -0.2546 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.0105 S13: -0.0848 REMARK 3 S21: 0.1183 S22: 0.0599 S23: 0.0547 REMARK 3 S31: -0.0143 S32: -0.0319 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|109 - A|114 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.7219 31.3155 17.5061 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.1036 REMARK 3 T33: 0.0866 T12: -0.0126 REMARK 3 T13: -0.0097 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.0639 L22: 0.0920 REMARK 3 L33: 0.0000 L12: 0.3636 REMARK 3 L13: -0.2144 L23: 0.2372 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.0635 S13: -0.0104 REMARK 3 S21: 0.0204 S22: -0.0613 S23: -0.0433 REMARK 3 S31: -0.0946 S32: 0.0809 S33: 0.0422 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|115 - A|129 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.9213 27.9603 7.7555 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0710 REMARK 3 T33: 0.0709 T12: 0.0334 REMARK 3 T13: -0.0418 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.2042 L22: 0.0039 REMARK 3 L33: 0.9729 L12: 0.2780 REMARK 3 L13: 0.0967 L23: 0.5317 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.0430 S13: 0.0133 REMARK 3 S21: -0.1523 S22: -0.0672 S23: 0.0722 REMARK 3 S31: -0.1521 S32: -0.1332 S33: 0.0609 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6, 200MM TO REMARK 280 800 MM SODIUM CHLORIDE AND 100 MM SODIUM SULFATE. TB-XO4 WAS REMARK 280 DIRECTLY MIXED WITH THE PROTEIN SOLUTION AT A FINAL REMARK 280 CONCENTRATION OF 100 MM PRIOR TO CRYSTALLIZATION., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.86900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.95750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.95750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.30350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.95750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.95750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.43450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.95750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.95750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.30350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.95750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.95750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.43450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.86900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 439 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 90.4 REMARK 620 3 SER A 72 OG 87.1 167.8 REMARK 620 4 ARG A 73 O 91.4 92.7 99.3 REMARK 620 5 HOH A 374 O 100.1 89.7 79.1 168.2 REMARK 620 6 HOH A 419 O 172.0 97.6 85.1 88.4 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT A 205 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD1 REMARK 620 2 7MT A 205 N23 75.0 REMARK 620 3 7MT A 205 N02 163.8 89.4 REMARK 620 4 7MT A 205 N06 127.5 128.3 66.0 REMARK 620 5 7MT A 205 N09 109.5 64.8 66.3 63.7 REMARK 620 6 7MT A 205 O26 77.9 67.6 92.3 150.5 127.3 REMARK 620 7 7MT A 205 N17 122.6 126.3 63.5 83.7 127.9 68.3 REMARK 620 8 7MT A 205 O27 82.0 145.6 109.9 86.1 148.8 82.8 49.8 REMARK 620 9 ASP A 101 OD2 54.1 97.4 134.3 74.8 76.0 132.0 135.2 89.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 7MT A 206 N09 REMARK 620 2 7MT A 206 N23 63.0 REMARK 620 3 HOH A 486 O 110.8 112.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT A 206 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 7MT A 205 O25 REMARK 620 2 7MT A 206 N23 68.3 REMARK 620 3 7MT A 206 N02 71.5 113.9 REMARK 620 4 7MT A 206 N06 138.1 119.4 68.1 REMARK 620 5 7MT A 206 N09 85.6 62.9 63.9 67.0 REMARK 620 6 7MT A 206 O26 76.1 67.4 143.5 145.8 130.3 REMARK 620 7 7MT A 206 N17 84.1 151.0 62.2 86.9 125.6 98.4 REMARK 620 8 7MT A 206 O27 114.2 132.3 111.3 90.9 157.7 67.5 51.7 REMARK 620 9 HOH A 321 O 141.6 75.3 137.5 71.5 88.6 79.0 128.5 81.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT A 206 DBREF 6F2J A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET TB A 201 1 HET CL A 202 1 HET CL A 203 1 HET NA A 204 1 HET 7MT A 205 53 HET 7MT A 206 53 HETNAM TB TERBIUM(III) ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM 7MT TB-XO4 FORMUL 2 TB TB 3+ FORMUL 3 CL 2(CL 1-) FORMUL 5 NA NA 1+ FORMUL 6 7MT 2(C20 H23 N5 O4 TB 5+) FORMUL 8 HOH *215(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 ASP A 101 1 14 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.05 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.06 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.04 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK O SER A 60 NA NA A 204 1555 1555 2.35 LINK O CYS A 64 NA NA A 204 1555 1555 2.39 LINK OG SER A 72 NA NA A 204 1555 1555 2.48 LINK O ARG A 73 NA NA A 204 1555 1555 2.47 LINK OD1 ASP A 101 TB 7MT A 205 1555 1555 2.50 LINK OD2 ASP A 101 TB 7MT A 205 1555 1555 2.28 LINK TB TB A 201 N09 7MT A 206 1555 1555 2.11 LINK TB TB A 201 N23 7MT A 206 1555 1555 3.00 LINK TB TB A 201 O HOH A 486 1555 1555 3.44 LINK NA NA A 204 O HOH A 374 1555 1555 2.51 LINK NA NA A 204 O HOH A 419 1555 1555 2.46 LINK O25 7MT A 205 TB 7MT A 206 1555 1555 2.40 LINK TB 7MT A 206 O HOH A 321 1555 1555 2.26 SITE 1 AC1 2 7MT A 205 7MT A 206 SITE 1 AC2 4 SER A 24 GLY A 26 GLN A 121 HOH A 445 SITE 1 AC3 4 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 1 AC4 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC4 6 HOH A 374 HOH A 419 SITE 1 AC5 7 TRP A 62 TRP A 63 ASP A 101 ASP A 119 SITE 2 AC5 7 TB A 201 7MT A 206 HOH A 332 SITE 1 AC6 14 ARG A 5 LYS A 33 GLY A 117 THR A 118 SITE 2 AC6 14 ASP A 119 ALA A 122 TRP A 123 ARG A 125 SITE 3 AC6 14 TB A 201 7MT A 205 HOH A 311 HOH A 321 SITE 4 AC6 14 HOH A 330 HOH A 403 CRYST1 77.915 77.915 37.738 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026498 0.00000