HEADER HYDROLASE 24-NOV-17 6F2J
TITLE CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME CO-CRYSTALLIZED IN
TITLE 2 PRESENCE OF 100 MM TB-XO4 AND 100 MM SODIUM SULFATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LYSOZYME C;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV;
COMPND 5 EC: 3.2.1.17
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS;
SOURCE 3 ORGANISM_COMMON: CHICKEN;
SOURCE 4 ORGANISM_TAXID: 9031
KEYWDS TB-XO4, NUCLEATION, PHASING, CRYSTALLOPHORE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.ENGILBERGE,F.RIOBE,S.DI PIETRO,E.GIRARD,E.DUMONT,O.MAURY
REVDAT 4 20-NOV-24 6F2J 1 REMARK
REVDAT 3 17-JAN-24 6F2J 1 LINK
REVDAT 2 29-MAY-19 6F2J 1 COMPND HETNAM
REVDAT 1 03-OCT-18 6F2J 0
JRNL AUTH S.ENGILBERGE,F.RIOBE,T.WAGNER,S.DI PIETRO,C.BREYTON,
JRNL AUTH 2 B.FRANZETTI,S.SHIMA,E.GIRARD,E.DUMONT,O.MAURY
JRNL TITL UNVEILING THE BINDING MODES OF THE CRYSTALLOPHORE, A
JRNL TITL 2 TERBIUM-BASED NUCLEATING AND PHASING MOLECULAR AGENT FOR
JRNL TITL 3 PROTEIN CRYSTALLOGRAPHY.
JRNL REF CHEMISTRY V. 24 9739 2018
JRNL REFN ISSN 1521-3765
JRNL PMID 29806881
JRNL DOI 10.1002/CHEM.201802172
REMARK 2
REMARK 2 RESOLUTION. 1.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 28998
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.160
REMARK 3 R VALUE (WORKING SET) : 0.159
REMARK 3 FREE R VALUE : 0.179
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1450
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 15
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.35
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.29
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2696
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1970
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2561
REMARK 3 BIN R VALUE (WORKING SET) : 0.1961
REMARK 3 BIN FREE R VALUE : 0.2130
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1001
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 64
REMARK 3 SOLVENT ATOMS : 215
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 13.34
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.80590
REMARK 3 B22 (A**2) : 0.80590
REMARK 3 B33 (A**2) : -1.61170
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.140
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.054
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.054
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.053
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.049
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2144 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3841 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 447 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 29 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 325 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2144 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 8 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 136 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2617 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.05
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.74
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.61
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|1 - A|14 }
REMARK 3 ORIGIN FOR THE GROUP (A): -6.9627 15.5159 9.6944
REMARK 3 T TENSOR
REMARK 3 T11: 0.0520 T22: 0.0877
REMARK 3 T33: 0.1009 T12: -0.0012
REMARK 3 T13: -0.0331 T23: -0.0268
REMARK 3 L TENSOR
REMARK 3 L11: 0.4750 L22: 0.7630
REMARK 3 L33: 0.4407 L12: 0.5087
REMARK 3 L13: 0.2820 L23: 0.3463
REMARK 3 S TENSOR
REMARK 3 S11: 0.0436 S12: 0.1019 S13: 0.0000
REMARK 3 S21: -0.0441 S22: -0.0505 S23: 0.1669
REMARK 3 S31: 0.0550 S32: -0.0070 S33: 0.0068
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|15 - A|24 }
REMARK 3 ORIGIN FOR THE GROUP (A): -11.7735 23.4225 20.6898
REMARK 3 T TENSOR
REMARK 3 T11: 0.0405 T22: 0.0756
REMARK 3 T33: 0.1235 T12: -0.0084
REMARK 3 T13: 0.0335 T23: -0.0408
REMARK 3 L TENSOR
REMARK 3 L11: 0.2383 L22: 0.3485
REMARK 3 L33: 0.4561 L12: -0.0437
REMARK 3 L13: 0.1512 L23: -0.1761
REMARK 3 S TENSOR
REMARK 3 S11: 0.0131 S12: 0.0310 S13: -0.0497
REMARK 3 S21: 0.0352 S22: 0.0990 S23: 0.0920
REMARK 3 S31: -0.0328 S32: -0.0459 S33: -0.1120
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { A|25 - A|42 }
REMARK 3 ORIGIN FOR THE GROUP (A): -0.0541 21.3286 12.7268
REMARK 3 T TENSOR
REMARK 3 T11: 0.0216 T22: 0.0494
REMARK 3 T33: 0.0576 T12: 0.0087
REMARK 3 T13: -0.0103 T23: -0.0090
REMARK 3 L TENSOR
REMARK 3 L11: 0.5216 L22: 0.7574
REMARK 3 L33: 1.0723 L12: -0.0416
REMARK 3 L13: 0.3321 L23: 0.0765
REMARK 3 S TENSOR
REMARK 3 S11: 0.0449 S12: 0.0660 S13: -0.0408
REMARK 3 S21: 0.0047 S22: -0.0492 S23: 0.0161
REMARK 3 S31: -0.0382 S32: 0.0319 S33: 0.0043
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { A|43 - A|50 }
REMARK 3 ORIGIN FOR THE GROUP (A): 14.0369 19.4553 23.1350
REMARK 3 T TENSOR
REMARK 3 T11: 0.0805 T22: 0.0998
REMARK 3 T33: 0.1068 T12: 0.0054
REMARK 3 T13: -0.0432 T23: -0.0086
REMARK 3 L TENSOR
REMARK 3 L11: 0.2520 L22: 0.0004
REMARK 3 L33: 0.0011 L12: 0.0513
REMARK 3 L13: -0.0281 L23: 0.0857
REMARK 3 S TENSOR
REMARK 3 S11: -0.0239 S12: 0.0954 S13: -0.0398
REMARK 3 S21: 0.1238 S22: -0.0203 S23: -0.0701
REMARK 3 S31: -0.0981 S32: -0.0131 S33: 0.0442
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: { A|51 - A|68 }
REMARK 3 ORIGIN FOR THE GROUP (A): 6.7215 16.4898 25.8586
REMARK 3 T TENSOR
REMARK 3 T11: 0.0662 T22: 0.0609
REMARK 3 T33: 0.0635 T12: 0.0322
REMARK 3 T13: -0.0184 T23: -0.0036
REMARK 3 L TENSOR
REMARK 3 L11: 1.0131 L22: 0.5730
REMARK 3 L33: 0.6558 L12: 0.3079
REMARK 3 L13: -0.7705 L23: 0.0354
REMARK 3 S TENSOR
REMARK 3 S11: -0.0612 S12: -0.0419 S13: -0.0700
REMARK 3 S21: 0.1002 S22: 0.0028 S23: -0.0573
REMARK 3 S31: -0.0311 S32: -0.0558 S33: 0.0584
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: { A|69 - A|88 }
REMARK 3 ORIGIN FOR THE GROUP (A): 2.7641 11.5911 26.4466
REMARK 3 T TENSOR
REMARK 3 T11: 0.0684 T22: 0.0808
REMARK 3 T33: 0.0866 T12: 0.0248
REMARK 3 T13: 0.0111 T23: -0.0038
REMARK 3 L TENSOR
REMARK 3 L11: 0.6715 L22: 1.2357
REMARK 3 L33: 0.2142 L12: -0.3007
REMARK 3 L13: 0.0645 L23: -0.8491
REMARK 3 S TENSOR
REMARK 3 S11: -0.0702 S12: -0.1327 S13: -0.1580
REMARK 3 S21: 0.0826 S22: 0.0376 S23: 0.1001
REMARK 3 S31: -0.0047 S32: -0.0276 S33: 0.0326
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: { A|89 - A|108 }
REMARK 3 ORIGIN FOR THE GROUP (A): -3.8765 21.9873 25.1568
REMARK 3 T TENSOR
REMARK 3 T11: 0.0661 T22: 0.0595
REMARK 3 T33: 0.0674 T12: 0.0186
REMARK 3 T13: 0.0179 T23: -0.0059
REMARK 3 L TENSOR
REMARK 3 L11: 0.3794 L22: 0.4132
REMARK 3 L33: 0.5914 L12: -0.7206
REMARK 3 L13: 0.2779 L23: -0.2546
REMARK 3 S TENSOR
REMARK 3 S11: -0.0474 S12: 0.0105 S13: -0.0848
REMARK 3 S21: 0.1183 S22: 0.0599 S23: 0.0547
REMARK 3 S31: -0.0143 S32: -0.0319 S33: -0.0125
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: { A|109 - A|114 }
REMARK 3 ORIGIN FOR THE GROUP (A): 2.7219 31.3155 17.5061
REMARK 3 T TENSOR
REMARK 3 T11: 0.0542 T22: 0.1036
REMARK 3 T33: 0.0866 T12: -0.0126
REMARK 3 T13: -0.0097 T23: 0.0293
REMARK 3 L TENSOR
REMARK 3 L11: 0.0639 L22: 0.0920
REMARK 3 L33: 0.0000 L12: 0.3636
REMARK 3 L13: -0.2144 L23: 0.2372
REMARK 3 S TENSOR
REMARK 3 S11: 0.0191 S12: -0.0635 S13: -0.0104
REMARK 3 S21: 0.0204 S22: -0.0613 S23: -0.0433
REMARK 3 S31: -0.0946 S32: 0.0809 S33: 0.0422
REMARK 3
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: { A|115 - A|129 }
REMARK 3 ORIGIN FOR THE GROUP (A): -8.9213 27.9603 7.7555
REMARK 3 T TENSOR
REMARK 3 T11: 0.0759 T22: 0.0710
REMARK 3 T33: 0.0709 T12: 0.0334
REMARK 3 T13: -0.0418 T23: 0.0062
REMARK 3 L TENSOR
REMARK 3 L11: 0.2042 L22: 0.0039
REMARK 3 L33: 0.9729 L12: 0.2780
REMARK 3 L13: 0.0967 L23: 0.5317
REMARK 3 S TENSOR
REMARK 3 S11: 0.0063 S12: -0.0430 S13: 0.0133
REMARK 3 S21: -0.1523 S22: -0.0672 S23: 0.0722
REMARK 3 S31: -0.1521 S32: -0.1332 S33: 0.0609
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6F2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-17.
REMARK 100 THE DEPOSITION ID IS D_1200006710.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-JAN-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : BM30A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29089
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300
REMARK 200 RESOLUTION RANGE LOW (A) : 38.960
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 14.00
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H87
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 38.45
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6, 200MM TO
REMARK 280 800 MM SODIUM CHLORIDE AND 100 MM SODIUM SULFATE. TB-XO4 WAS
REMARK 280 DIRECTLY MIXED WITH THE PROTEIN SOLUTION AT A FINAL
REMARK 280 CONCENTRATION OF 100 MM PRIOR TO CRYSTALLIZATION., VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.86900
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.95750
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.95750
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.30350
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.95750
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.95750
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.43450
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.95750
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.95750
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.30350
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.95750
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.95750
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.43450
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.86900
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 6860 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 439 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION.
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A 204 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 60 O
REMARK 620 2 CYS A 64 O 90.4
REMARK 620 3 SER A 72 OG 87.1 167.8
REMARK 620 4 ARG A 73 O 91.4 92.7 99.3
REMARK 620 5 HOH A 374 O 100.1 89.7 79.1 168.2
REMARK 620 6 HOH A 419 O 172.0 97.6 85.1 88.4 79.9
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 7MT A 205 TB
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 101 OD1
REMARK 620 2 7MT A 205 N23 75.0
REMARK 620 3 7MT A 205 N02 163.8 89.4
REMARK 620 4 7MT A 205 N06 127.5 128.3 66.0
REMARK 620 5 7MT A 205 N09 109.5 64.8 66.3 63.7
REMARK 620 6 7MT A 205 O26 77.9 67.6 92.3 150.5 127.3
REMARK 620 7 7MT A 205 N17 122.6 126.3 63.5 83.7 127.9 68.3
REMARK 620 8 7MT A 205 O27 82.0 145.6 109.9 86.1 148.8 82.8 49.8
REMARK 620 9 ASP A 101 OD2 54.1 97.4 134.3 74.8 76.0 132.0 135.2 89.3
REMARK 620 N 1 2 3 4 5 6 7 8
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 TB A 201 TB
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 7MT A 206 N09
REMARK 620 2 7MT A 206 N23 63.0
REMARK 620 3 HOH A 486 O 110.8 112.6
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 7MT A 206 TB
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 7MT A 205 O25
REMARK 620 2 7MT A 206 N23 68.3
REMARK 620 3 7MT A 206 N02 71.5 113.9
REMARK 620 4 7MT A 206 N06 138.1 119.4 68.1
REMARK 620 5 7MT A 206 N09 85.6 62.9 63.9 67.0
REMARK 620 6 7MT A 206 O26 76.1 67.4 143.5 145.8 130.3
REMARK 620 7 7MT A 206 N17 84.1 151.0 62.2 86.9 125.6 98.4
REMARK 620 8 7MT A 206 O27 114.2 132.3 111.3 90.9 157.7 67.5 51.7
REMARK 620 9 HOH A 321 O 141.6 75.3 137.5 71.5 88.6 79.0 128.5 81.7
REMARK 620 N 1 2 3 4 5 6 7 8
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue TB A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT A 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT A 206
DBREF 6F2J A 1 129 UNP P00698 LYSC_CHICK 19 147
SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS
SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY
SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN
SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP
SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN
SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE
SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER
SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY
SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY
SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU
HET TB A 201 1
HET CL A 202 1
HET CL A 203 1
HET NA A 204 1
HET 7MT A 205 53
HET 7MT A 206 53
HETNAM TB TERBIUM(III) ION
HETNAM CL CHLORIDE ION
HETNAM NA SODIUM ION
HETNAM 7MT TB-XO4
FORMUL 2 TB TB 3+
FORMUL 3 CL 2(CL 1-)
FORMUL 5 NA NA 1+
FORMUL 6 7MT 2(C20 H23 N5 O4 TB 5+)
FORMUL 8 HOH *215(H2 O)
HELIX 1 AA1 GLY A 4 HIS A 15 1 12
HELIX 2 AA2 ASN A 19 TYR A 23 5 5
HELIX 3 AA3 SER A 24 ASN A 37 1 14
HELIX 4 AA4 PRO A 79 SER A 85 5 7
HELIX 5 AA5 ILE A 88 ASP A 101 1 14
HELIX 6 AA6 ASN A 103 ALA A 107 5 5
HELIX 7 AA7 TRP A 108 CYS A 115 1 8
HELIX 8 AA8 ASP A 119 ARG A 125 5 7
SHEET 1 AA1 3 THR A 43 ARG A 45 0
SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44
SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53
SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.05
SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.06
SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.04
SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03
LINK O SER A 60 NA NA A 204 1555 1555 2.35
LINK O CYS A 64 NA NA A 204 1555 1555 2.39
LINK OG SER A 72 NA NA A 204 1555 1555 2.48
LINK O ARG A 73 NA NA A 204 1555 1555 2.47
LINK OD1 ASP A 101 TB 7MT A 205 1555 1555 2.50
LINK OD2 ASP A 101 TB 7MT A 205 1555 1555 2.28
LINK TB TB A 201 N09 7MT A 206 1555 1555 2.11
LINK TB TB A 201 N23 7MT A 206 1555 1555 3.00
LINK TB TB A 201 O HOH A 486 1555 1555 3.44
LINK NA NA A 204 O HOH A 374 1555 1555 2.51
LINK NA NA A 204 O HOH A 419 1555 1555 2.46
LINK O25 7MT A 205 TB 7MT A 206 1555 1555 2.40
LINK TB 7MT A 206 O HOH A 321 1555 1555 2.26
SITE 1 AC1 2 7MT A 205 7MT A 206
SITE 1 AC2 4 SER A 24 GLY A 26 GLN A 121 HOH A 445
SITE 1 AC3 4 ASN A 65 GLY A 67 ARG A 68 THR A 69
SITE 1 AC4 6 SER A 60 CYS A 64 SER A 72 ARG A 73
SITE 2 AC4 6 HOH A 374 HOH A 419
SITE 1 AC5 7 TRP A 62 TRP A 63 ASP A 101 ASP A 119
SITE 2 AC5 7 TB A 201 7MT A 206 HOH A 332
SITE 1 AC6 14 ARG A 5 LYS A 33 GLY A 117 THR A 118
SITE 2 AC6 14 ASP A 119 ALA A 122 TRP A 123 ARG A 125
SITE 3 AC6 14 TB A 201 7MT A 205 HOH A 311 HOH A 321
SITE 4 AC6 14 HOH A 330 HOH A 403
CRYST1 77.915 77.915 37.738 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012834 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012834 0.000000 0.00000
SCALE3 0.000000 0.000000 0.026498 0.00000