HEADER TRANSFERASE 29-NOV-17 6F4L TITLE STRUCTURE OF QUINOLINATE SYNTHASE WITH INHIBITOR-DERIVED QUINOLINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: NADA, TM_1644; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS NAD BIOSYNTHESIS, IRON SULFUR CLUSTER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 3 17-JAN-24 6F4L 1 REMARK REVDAT 2 30-MAY-18 6F4L 1 JRNL REVDAT 1 25-APR-18 6F4L 0 JRNL AUTH A.VOLBEDA,J.SAEZ CABODEVILLA,C.DARNAULT,O.GIGAREL,T.H.HAN, JRNL AUTH 2 O.RENOUX,O.HAMELIN,S.OLLAGNIER-DE-CHOUDENS,P.AMARA, JRNL AUTH 3 J.C.FONTECILLA-CAMPS JRNL TITL CRYSTALLOGRAPHIC TRAPPING OF REACTION INTERMEDIATES IN JRNL TITL 2 QUINOLINIC ACID SYNTHESIS BY NADA. JRNL REF ACS CHEM. BIOL. V. 13 1209 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29641168 JRNL DOI 10.1021/ACSCHEMBIO.7B01104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,D.REICHMANN,P.AMARA, REMARK 1 AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS REMARK 1 TITL CRYSTAL STRUCTURES OF QUINOLINATE SYNTHASE IN COMPLEX WITH A REMARK 1 TITL 2 SUBSTRATE ANALOGUE, THE CONDENSATION INTERMEDIATE, AND REMARK 1 TITL 3 SUBSTRATE-DERIVED PRODUCT. REMARK 1 REF J. AM. CHEM. SOC. V. 138 11802 2016 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 27545412 REMARK 1 DOI 10.1021/JACS.6B05884 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.V.CHERRIER,A.CHAN,C.DARNAULT,D.REICHMANN,P.AMARA, REMARK 1 AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS REMARK 1 TITL THE CRYSTAL STRUCTURE OF FE4S4 QUINOLINATE SYNTHASE UNRAVELS REMARK 1 TITL 2 AN ENZYMATIC DEHYDRATION MECHANISM THAT USES TYROSINE AND A REMARK 1 TITL 3 HYDROLASE-TYPE TRIAD. REMARK 1 REF J. AM. CHEM. SOC. V. 136 5253 2014 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 24650327 REMARK 1 DOI 10.1021/JA501431B REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 986 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.391 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.078 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2485 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3364 ; 1.373 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 5.049 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;39.452 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;16.059 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1797 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 80 REMARK 3 RESIDUE RANGE : A 254 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5078 -5.8328 24.4120 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0772 REMARK 3 T33: 0.0591 T12: -0.0071 REMARK 3 T13: 0.0006 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.4804 L22: 0.7094 REMARK 3 L33: 1.1757 L12: 0.1382 REMARK 3 L13: 0.0684 L23: -0.5786 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.0192 S13: 0.0319 REMARK 3 S21: -0.0365 S22: 0.0566 S23: -0.0216 REMARK 3 S31: 0.0355 S32: -0.2416 S33: -0.0671 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 167 REMARK 3 RESIDUE RANGE : A 280 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7322 7.2822 16.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0126 REMARK 3 T33: 0.0672 T12: -0.0029 REMARK 3 T13: 0.0085 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.4450 L22: 0.5020 REMARK 3 L33: 2.0471 L12: -0.1866 REMARK 3 L13: 0.1097 L23: 0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.0534 S13: -0.0288 REMARK 3 S21: 0.0134 S22: -0.0426 S23: 0.0045 REMARK 3 S31: 0.0919 S32: -0.0372 S33: 0.0587 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2857 -0.1954 -0.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0226 REMARK 3 T33: 0.0281 T12: 0.0065 REMARK 3 T13: -0.0247 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.5197 L22: 0.9908 REMARK 3 L33: 0.8696 L12: -0.3838 REMARK 3 L13: 0.2231 L23: -0.3159 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0192 S13: -0.0289 REMARK 3 S21: -0.1032 S22: -0.0008 S23: 0.0822 REMARK 3 S31: -0.0283 S32: 0.0255 S33: -0.0083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6F4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14259 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 1.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG33500, NA2HPO4, CHES, ANAEROBIC, PH REMARK 280 9.1, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -3 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 109 CG OD1 ND2 REMARK 470 LYS A 183 CD CE NZ REMARK 470 GLY A 298 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 163 -160.82 -76.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 81 SG REMARK 620 2 SF4 A 301 S1 95.5 REMARK 620 3 SF4 A 301 S2 120.6 104.8 REMARK 620 4 SF4 A 301 S3 122.4 104.0 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 168 SG REMARK 620 2 SF4 A 301 S2 111.9 REMARK 620 3 SF4 A 301 S3 110.3 108.8 REMARK 620 4 SF4 A 301 S4 117.1 104.7 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 254 SG REMARK 620 2 SF4 A 301 S1 117.5 REMARK 620 3 SF4 A 301 S3 126.1 103.3 REMARK 620 4 SF4 A 301 S4 96.8 105.1 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NTM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 304 DBREF 6F4L A 1 298 UNP Q9X1X7 NADA_THEMA 1 298 SEQADV 6F4L MET A -6 UNP Q9X1X7 INITIATING METHIONINE SEQADV 6F4L HIS A -5 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4L HIS A -4 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4L HIS A -3 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4L HIS A -2 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4L HIS A -1 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4L HIS A 0 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4L ARG A 219 UNP Q9X1X7 LYS 219 ENGINEERED MUTATION SEQRES 1 A 305 MET HIS HIS HIS HIS HIS HIS MET VAL ASP GLU ILE LEU SEQRES 2 A 305 LYS LEU LYS LYS GLU LYS GLY TYR ILE ILE LEU ALA HIS SEQRES 3 A 305 ASN TYR GLN ILE PRO GLU LEU GLN ASP ILE ALA ASP PHE SEQRES 4 A 305 VAL GLY ASP SER LEU GLN LEU ALA ARG LYS ALA MET GLU SEQRES 5 A 305 LEU SER GLU LYS LYS ILE LEU PHE LEU GLY VAL ASP PHE SEQRES 6 A 305 MET ALA GLU LEU VAL LYS ILE LEU ASN PRO ASP LYS LYS SEQRES 7 A 305 VAL ILE VAL PRO ASP ARG SER ALA THR CYS PRO MET ALA SEQRES 8 A 305 ASN ARG LEU THR PRO GLU ILE ILE ARG GLU TYR ARG GLU SEQRES 9 A 305 LYS PHE PRO ASP ALA PRO VAL VAL LEU TYR VAL ASN SER SEQRES 10 A 305 THR SER GLU CYS LYS THR LEU ALA ASP VAL ILE CYS THR SEQRES 11 A 305 SER ALA ASN ALA VAL GLU VAL VAL LYS LYS LEU ASP SER SEQRES 12 A 305 SER VAL VAL ILE PHE GLY PRO ASP ARG ASN LEU GLY GLU SEQRES 13 A 305 TYR VAL ALA GLU LYS THR GLY LYS LYS VAL ILE THR ILE SEQRES 14 A 305 PRO GLU ASN GLY HIS CYS PRO VAL HIS GLN PHE ASN ALA SEQRES 15 A 305 GLU SER ILE ASP ALA VAL ARG LYS LYS TYR PRO ASP ALA SEQRES 16 A 305 LYS VAL ILE VAL HIS PRO GLU CYS PRO LYS PRO VAL ARG SEQRES 17 A 305 ASP LYS ALA ASP TYR VAL GLY SER THR GLY GLN MET GLU SEQRES 18 A 305 LYS ILE PRO GLU ARG ASP PRO SER ARG ILE PHE VAL ILE SEQRES 19 A 305 GLY THR GLU ILE GLY MET ILE HIS LYS LEU LYS LYS LYS SEQRES 20 A 305 PHE PRO ASP ARG GLU PHE VAL PRO LEU GLU MET ALA VAL SEQRES 21 A 305 CYS VAL ASN MET LYS LYS ASN THR LEU GLU ASN THR LEU SEQRES 22 A 305 HIS ALA LEU GLN THR GLU SER PHE GLU VAL ILE LEU PRO SEQRES 23 A 305 LYS GLU VAL ILE GLU LYS ALA LYS LYS PRO ILE LEU ARG SEQRES 24 A 305 MET PHE GLU LEU MET GLY HET SF4 A 301 8 HET NTM A 302 12 HET CL A 303 1 HET NHE A 304 13 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM NTM QUINOLINIC ACID HETNAM CL CHLORIDE ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 SF4 FE4 S4 FORMUL 3 NTM C7 H5 N O4 FORMUL 4 CL CL 1- FORMUL 5 NHE C8 H17 N O3 S FORMUL 6 HOH *37(H2 O) HELIX 1 AA1 HIS A -3 LYS A 12 1 16 HELIX 2 AA2 ILE A 23 ALA A 30 1 8 HELIX 3 AA3 ASP A 35 LEU A 46 1 12 HELIX 4 AA4 VAL A 56 ASN A 67 1 12 HELIX 5 AA5 CYS A 81 LEU A 87 1 7 HELIX 6 AA6 THR A 88 PHE A 99 1 12 HELIX 7 AA7 THR A 111 THR A 116 1 6 HELIX 8 AA8 ASN A 126 LEU A 134 1 9 HELIX 9 AA9 ASP A 144 GLY A 156 1 13 HELIX 10 AB1 CYS A 168 GLN A 172 5 5 HELIX 11 AB2 ASN A 174 TYR A 185 1 12 HELIX 12 AB3 PRO A 197 LYS A 203 1 7 HELIX 13 AB4 SER A 209 GLU A 214 1 6 HELIX 14 AB5 LYS A 215 ASP A 220 1 6 HELIX 15 AB6 ILE A 231 PHE A 241 1 11 HELIX 16 AB7 CYS A 254 LYS A 259 1 6 HELIX 17 AB8 THR A 261 GLU A 272 1 12 HELIX 18 AB9 PRO A 279 GLY A 298 1 20 SHEET 1 AA1 4 PHE A 32 GLY A 34 0 SHEET 2 AA1 4 TYR A 14 HIS A 19 1 N ALA A 18 O PHE A 32 SHEET 3 AA1 4 LYS A 50 LEU A 54 1 O LEU A 54 N LEU A 17 SHEET 4 AA1 4 LYS A 71 ILE A 73 1 O LYS A 71 N ILE A 51 SHEET 1 AA2 4 VAL A 120 CYS A 122 0 SHEET 2 AA2 4 VAL A 104 TYR A 107 1 N LEU A 106 O VAL A 120 SHEET 3 AA2 4 VAL A 138 GLY A 142 1 O ILE A 140 N VAL A 105 SHEET 4 AA2 4 LYS A 158 THR A 161 1 O ILE A 160 N PHE A 141 SHEET 1 AA3 4 TYR A 206 VAL A 207 0 SHEET 2 AA3 4 LYS A 189 VAL A 192 1 N VAL A 190 O TYR A 206 SHEET 3 AA3 4 ILE A 224 GLY A 228 1 O VAL A 226 N ILE A 191 SHEET 4 AA3 4 GLU A 245 PRO A 248 1 O VAL A 247 N PHE A 225 LINK SG CYS A 81 FE4 SF4 A 301 1555 1555 2.29 LINK SG CYS A 168 FE1 SF4 A 301 1555 1555 2.30 LINK SG CYS A 254 FE2 SF4 A 301 1555 1555 2.35 CISPEP 1 GLY A 142 PRO A 143 0 0.85 CISPEP 2 ILE A 162 PRO A 163 0 -6.71 CISPEP 3 SER A 273 PHE A 274 0 3.72 SITE 1 AC1 7 CYS A 81 MET A 83 CYS A 168 PRO A 169 SITE 2 AC1 7 GLU A 195 CYS A 254 NTM A 302 SITE 1 AC2 11 HIS A 19 TYR A 21 ASP A 35 SER A 36 SITE 2 AC2 11 TYR A 107 HIS A 193 GLU A 195 SER A 209 SITE 3 AC2 11 THR A 210 SF4 A 301 HOH A 419 SITE 1 AC3 1 ASP A 69 SITE 1 AC4 4 PRO A 103 ASP A 135 SER A 136 ARG A 292 CRYST1 55.440 49.310 61.900 90.00 107.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018038 0.000000 0.005588 0.00000 SCALE2 0.000000 0.020280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016913 0.00000