HEADER OXIDOREDUCTASE 01-DEC-17 6F5K TITLE CRYSTAL STRUCTURE OF LACCASE FROM MYCELIOPHTHORA THERMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR LACCASE, LCC1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: IN THE STRUCTURE HIS98 IS OXIDIZED TO AN OXO-HIS (OHI) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCELIOPHTHORA THERMOPHILA; SOURCE 3 ORGANISM_COMMON: SPOROTRICHUM THERMOPHILE; SOURCE 4 ORGANISM_TAXID: 78579; SOURCE 5 STRAIN: ATCC 42464 / BCRC 31852 / DSM 1799; SOURCE 6 GENE: LCC1, MYCTH_51627; SOURCE 7 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LACCASE, ASCOMYCETES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.A.ERNST,L.J.JOERGENSEN,K.PIONTEK,C.BUKH,L.H.OESTERGAARD,S.LARSEN, AUTHOR 2 M.J.BJERRUM REVDAT 5 17-JAN-24 6F5K 1 REMARK REVDAT 4 15-NOV-23 6F5K 1 HETSYN LINK ATOM REVDAT 3 29-JUL-20 6F5K 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 26-JUN-19 6F5K 1 JRNL REVDAT 1 12-DEC-18 6F5K 0 JRNL AUTH H.A.ERNST,L.J.JORGENSEN,C.BUKH,K.PIONTEK,D.A.PLATTNER, JRNL AUTH 2 L.H.OSTERGAARD,S.LARSEN,M.J.BJERRUM JRNL TITL A COMPARATIVE STRUCTURAL ANALYSIS OF THE SURFACE PROPERTIES JRNL TITL 2 OF ASCO-LACCASES. JRNL REF PLOS ONE V. 13 06589 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 30395580 JRNL DOI 10.1371/JOURNAL.PONE.0206589 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 85258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.6620 - 1.6200 0.99 6170 310 0.3010 0.3150 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.066 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.40000 REMARK 3 B22 (A**2) : 2.65000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 'HYDROGENS REMARK 4 REMARK 4 6F5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 0.5.24 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 48.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Q9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 UL PROTEIN (66 MG/ML) + 2 UL REMARK 280 RESERVOIR SOLUTION (0.1 M HEPES PH 7.5, 34 % PEG 400, 0.22 M REMARK 280 CACL2, 0.05 M GLYCINE), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.81200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.81200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.21300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.21300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.81200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.21300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.81200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.21300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 63 O HOH A 702 2.09 REMARK 500 O HOH A 1045 O HOH A 1183 2.09 REMARK 500 OD1 ASP A 530 O HOH A 703 2.18 REMARK 500 O HOH A 1047 O HOH A 1158 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 841 O HOH A 1000 3554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 142 -134.10 47.61 REMARK 500 GLU A 235 -36.56 -151.04 REMARK 500 ASP A 253 -128.74 48.17 REMARK 500 ASN A 381 108.90 -163.67 REMARK 500 ASN A 472 67.80 35.89 REMARK 500 ARG A 476 -168.63 -167.37 REMARK 500 ASN A 495 83.58 -154.55 REMARK 500 ASP A 556 -157.20 -160.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 438 ASP A 439 149.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 628 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HIS A 434 NE2 169.9 REMARK 620 3 HOH A1094 O 91.7 96.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 HIS A 138 NE2 137.2 REMARK 620 3 HIS A 504 NE2 105.9 112.5 REMARK 620 4 OH A 629 O 122.2 84.6 78.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 140 NE2 REMARK 620 2 HIS A 436 NE2 114.3 REMARK 620 3 HIS A 502 NE2 113.3 114.4 REMARK 620 4 OH A 629 O 93.0 123.8 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 341 O REMARK 620 2 ASP A 530 OD1 25.7 REMARK 620 3 ASP A 534 OD1 22.1 3.9 REMARK 620 4 ASP A 534 OD2 21.6 4.3 2.8 REMARK 620 5 HOH A 703 O 25.8 1.4 3.7 5.0 REMARK 620 6 HOH A 781 O 26.0 2.7 5.6 4.5 4.1 REMARK 620 7 HOH A 975 O 25.1 0.6 3.5 3.7 1.7 2.6 REMARK 620 8 HOH A 999 O 22.0 3.8 0.5 2.4 3.8 5.4 3.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 363 O REMARK 620 2 HOH A 828 O 95.8 REMARK 620 3 HOH A 858 O 76.7 77.9 REMARK 620 4 HOH A1106 O 90.9 148.6 133.4 REMARK 620 5 HOH A1124 O 82.2 66.5 136.1 84.2 REMARK 620 6 HOH A1156 O 117.2 135.7 81.7 64.3 142.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 431 ND1 REMARK 620 2 CYS A 503 SG 128.4 REMARK 620 3 HIS A 508 ND1 105.6 126.0 REMARK 620 N 1 2 DBREF 6F5K A 1 559 UNP G2QG31 G2QG31_MYCTT 48 602 SEQADV 6F5K ASN A 62 UNP G2QG31 INSERTION SEQADV 6F5K SER A 63 UNP G2QG31 INSERTION SEQADV 6F5K ILE A 64 UNP G2QG31 INSERTION SEQADV 6F5K ILE A 65 UNP G2QG31 INSERTION SEQADV 6F5K GLY A 66 UNP G2QG31 ARG 109 CONFLICT SEQADV 6F5K ARG A 545 UNP G2QG31 HIS 588 CONFLICT SEQRES 1 A 559 GLN GLN SER CYS ASN THR PRO SER ASN ARG ALA CYS TRP SEQRES 2 A 559 THR ASP GLY TYR ASP ILE ASN THR ASP TYR GLU VAL ASP SEQRES 3 A 559 SER PRO ASP THR GLY VAL VAL ARG PRO TYR THR LEU THR SEQRES 4 A 559 LEU THR GLU VAL ASP ASN TRP THR GLY PRO ASP GLY VAL SEQRES 5 A 559 VAL LYS GLU LYS VAL MET LEU VAL ASN ASN SER ILE ILE SEQRES 6 A 559 GLY PRO THR ILE PHE ALA ASP TRP GLY ASP THR ILE GLN SEQRES 7 A 559 VAL THR VAL ILE ASN ASN LEU GLU THR ASN GLY THR SER SEQRES 8 A 559 ILE HIS TRP HIS GLY LEU OHI GLN LYS GLY THR ASN LEU SEQRES 9 A 559 HIS ASP GLY ALA ASN GLY ILE THR GLU CYS PRO ILE PRO SEQRES 10 A 559 PRO LYS GLY GLY ARG LYS VAL TYR ARG PHE LYS ALA GLN SEQRES 11 A 559 GLN TYR GLY THR SER TRP TYR HIS SER HIS PHE SER ALA SEQRES 12 A 559 GLN TYR GLY ASN GLY VAL VAL GLY ALA ILE GLN ILE ASN SEQRES 13 A 559 GLY PRO ALA SER LEU PRO TYR ASP THR ASP LEU GLY VAL SEQRES 14 A 559 PHE PRO ILE SER ASP TYR TYR TYR SER SER ALA ASP GLU SEQRES 15 A 559 LEU VAL GLU LEU THR LYS ASN SER GLY ALA PRO PHE SER SEQRES 16 A 559 ASP ASN VAL LEU PHE ASN GLY THR ALA LYS HIS PRO GLU SEQRES 17 A 559 THR GLY GLU GLY GLU TYR ALA ASN VAL THR LEU THR PRO SEQRES 18 A 559 GLY ARG ARG HIS ARG LEU ARG LEU ILE ASN THR SER VAL SEQRES 19 A 559 GLU ASN HIS PHE GLN VAL SER LEU VAL ASN HIS THR MET SEQRES 20 A 559 THR ILE ILE ALA ALA ASP MET VAL PRO VAL ASN ALA MET SEQRES 21 A 559 THR VAL ASP SER LEU PHE LEU GLY VAL GLY GLN ARG TYR SEQRES 22 A 559 ASP VAL VAL ILE GLU ALA SER ARG THR PRO GLY ASN TYR SEQRES 23 A 559 TRP PHE ASN VAL THR PHE GLY GLY GLY LEU LEU CYS GLY SEQRES 24 A 559 GLY SER ARG ASN PRO TYR PRO ALA ALA ILE PHE HIS TYR SEQRES 25 A 559 ALA GLY ALA PRO GLY GLY PRO PRO THR ASP GLU GLY LYS SEQRES 26 A 559 ALA PRO VAL ASP HIS ASN CYS LEU ASP LEU PRO ASN LEU SEQRES 27 A 559 LYS PRO VAL VAL ALA ARG ASP VAL PRO LEU SER GLY PHE SEQRES 28 A 559 ALA LYS ARG PRO ASP ASN THR LEU ASP VAL THR LEU ASP SEQRES 29 A 559 THR THR GLY THR PRO LEU PHE VAL TRP LYS VAL ASN GLY SEQRES 30 A 559 SER ALA ILE ASN ILE ASP TRP GLY ARG PRO VAL VAL ASP SEQRES 31 A 559 TYR VAL LEU THR GLN ASN THR SER PHE PRO PRO GLY TYR SEQRES 32 A 559 ASN ILE VAL GLU VAL ASN GLY ALA ASP GLN TRP SER TYR SEQRES 33 A 559 TRP LEU ILE GLU ASN ASP PRO GLY ALA PRO PHE THR LEU SEQRES 34 A 559 PRO HIS PRO MET HIS LEU HIS GLY HIS ASP PHE TYR VAL SEQRES 35 A 559 LEU GLY ARG SER PRO ASP GLU SER PRO ALA SER ASN GLU SEQRES 36 A 559 ARG HIS VAL PHE ASP PRO ALA ARG ASP ALA GLY LEU LEU SEQRES 37 A 559 SER GLY ALA ASN PRO VAL ARG ARG ASP VAL THR MET LEU SEQRES 38 A 559 PRO ALA PHE GLY TRP VAL VAL LEU ALA PHE ARG ALA ASP SEQRES 39 A 559 ASN PRO GLY ALA TRP LEU PHE HIS CYS HIS ILE ALA TRP SEQRES 40 A 559 HIS VAL SER GLY GLY LEU GLY VAL VAL TYR LEU GLU ARG SEQRES 41 A 559 ALA ASP ASP LEU ARG GLY ALA VAL SER ASP ALA ASP ALA SEQRES 42 A 559 ASP ASP LEU ASP ARG LEU CYS ALA ASP TRP ARG ARG TYR SEQRES 43 A 559 TRP PRO THR ASN PRO TYR PRO LYS SER ASP SER GLY LEU MODRES 6F5K OHI A 98 HIS MODIFIED RESIDUE HET OHI A 98 16 HET NAG B 1 26 HET NAG B 2 26 HET BMA B 3 20 HET MAN B 4 20 HET MAN B 5 21 HET NAG C 1 26 HET NAG C 2 27 HET NAG D 1 26 HET NAG D 2 26 HET BMA D 3 20 HET MAN D 4 20 HET MAN D 5 20 HET MAN D 6 21 HET NAG E 1 26 HET NAG E 2 26 HET BMA E 3 21 HET NAG F 1 26 HET NAG F 2 26 HET BMA F 3 21 HET CU A 601 1 HET CU A 602 1 HET CU A 603 1 HET CU A 604 1 HET CA A 605 1 HET CA A 606 1 HET NAG A 626 27 HET NAG A 627 27 HET 2PE A 628 23 HET OH A 629 1 HETNAM OHI 3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM OH HYDROXIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 OHI C6 H7 N3 O3 FORMUL 2 NAG 12(C8 H15 N O6) FORMUL 2 BMA 4(C6 H12 O6) FORMUL 2 MAN 5(C6 H12 O6) FORMUL 7 CU 4(CU 2+) FORMUL 11 CA 2(CA 2+) FORMUL 15 2PE C18 H38 O10 FORMUL 16 OH H O 1- FORMUL 17 HOH *526(H2 O) HELIX 1 AA1 THR A 102 ASP A 106 5 5 HELIX 2 AA2 ALA A 143 GLY A 148 5 6 HELIX 3 AA3 SER A 179 SER A 190 1 12 HELIX 4 AA4 GLY A 293 LEU A 297 5 5 HELIX 5 AA5 ARG A 354 ASP A 356 5 3 HELIX 6 AA6 PRO A 387 THR A 394 1 8 HELIX 7 AA7 PRO A 400 TYR A 403 5 4 HELIX 8 AA8 ASP A 460 ALA A 465 1 6 HELIX 9 AA9 GLY A 466 LEU A 468 5 3 HELIX 10 AB1 ILE A 505 GLY A 511 1 7 HELIX 11 AB2 ARG A 520 VAL A 528 1 9 HELIX 12 AB3 SER A 529 TRP A 547 1 19 HELIX 13 AB4 PRO A 548 ASN A 550 5 3 SHEET 1 AA1 2 CYS A 12 THR A 14 0 SHEET 2 AA1 2 TYR A 17 ASP A 18 -1 O TYR A 17 N THR A 14 SHEET 1 AA2 4 VAL A 53 VAL A 60 0 SHEET 2 AA2 4 VAL A 33 THR A 47 -1 N TRP A 46 O LYS A 54 SHEET 3 AA2 4 THR A 76 ASN A 84 1 O ILE A 82 N LEU A 38 SHEET 4 AA2 4 GLY A 121 LYS A 128 -1 O TYR A 125 N VAL A 79 SHEET 1 AA3 4 GLY A 66 ASP A 72 0 SHEET 2 AA3 4 VAL A 150 ASN A 156 1 O VAL A 150 N GLY A 66 SHEET 3 AA3 4 GLY A 133 SER A 139 -1 N TYR A 137 O GLY A 151 SHEET 4 AA3 4 ILE A 92 HIS A 95 -1 N HIS A 93 O HIS A 138 SHEET 1 AA4 6 ASN A 197 PHE A 200 0 SHEET 2 AA4 6 THR A 165 TYR A 175 -1 N SER A 173 O LEU A 199 SHEET 3 AA4 6 ARG A 224 ASN A 231 1 O ILE A 230 N ILE A 172 SHEET 4 AA4 6 ARG A 272 GLU A 278 -1 O VAL A 275 N LEU A 227 SHEET 5 AA4 6 MET A 247 ALA A 252 -1 N ILE A 250 O ASP A 274 SHEET 6 AA4 6 VAL A 255 VAL A 262 -1 O MET A 260 N ILE A 249 SHEET 1 AA5 5 ASN A 216 LEU A 219 0 SHEET 2 AA5 5 ALA A 307 TYR A 312 1 O HIS A 311 N LEU A 219 SHEET 3 AA5 5 ASN A 285 THR A 291 -1 N TYR A 286 O PHE A 310 SHEET 4 AA5 5 PHE A 238 LEU A 242 -1 N SER A 241 O ASN A 289 SHEET 5 AA5 5 LEU A 265 LEU A 267 -1 O LEU A 267 N PHE A 238 SHEET 1 AA6 6 VAL A 372 VAL A 375 0 SHEET 2 AA6 6 THR A 358 ASP A 364 -1 N ASP A 364 O VAL A 372 SHEET 3 AA6 6 TRP A 414 ASN A 421 1 O LEU A 418 N LEU A 359 SHEET 4 AA6 6 TRP A 486 ARG A 492 -1 O VAL A 487 N ILE A 419 SHEET 5 AA6 6 PHE A 440 ARG A 445 -1 N TYR A 441 O ALA A 490 SHEET 6 AA6 6 VAL A 474 ARG A 476 -1 O ARG A 476 N PHE A 440 SHEET 1 AA7 5 ILE A 405 VAL A 408 0 SHEET 2 AA7 5 GLY A 514 GLU A 519 1 O VAL A 516 N VAL A 406 SHEET 3 AA7 5 GLY A 497 CYS A 503 -1 N TRP A 499 O TYR A 517 SHEET 4 AA7 5 HIS A 431 LEU A 435 -1 N HIS A 434 O HIS A 502 SHEET 5 AA7 5 VAL A 478 LEU A 481 -1 O LEU A 481 N HIS A 431 SSBOND 1 CYS A 4 CYS A 12 1555 1555 2.03 SSBOND 2 CYS A 114 CYS A 540 1555 1555 2.05 SSBOND 3 CYS A 298 CYS A 332 1555 1555 2.03 LINK ND2 ASN A 61 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 88 C1 NAG C 1 1555 1555 1.45 LINK C LEU A 97 N OHI A 98 1555 1555 1.33 LINK C OHI A 98 N GLN A 99 1555 1555 1.33 LINK ND2 ASN A 201 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 216 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 289 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 376 C1 NAG A 626 1555 1555 1.44 LINK ND2 ASN A 396 C1 NAG A 627 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O2 MAN D 4 C1 MAN D 5 1555 1555 1.44 LINK O2 MAN D 5 C1 MAN D 6 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK NE2 HIS A 93 CU CU A 602 1555 1555 1.91 LINK ND1 HIS A 95 CU CU A 604 1555 1555 1.95 LINK NE2 HIS A 138 CU CU A 604 1555 1555 2.04 LINK NE2 HIS A 140 CU CU A 603 1555 1555 2.09 LINK O VAL A 341 CA CA A 605 1555 8455 2.40 LINK O LEU A 363 CA CA A 606 1555 1555 2.29 LINK ND1 HIS A 431 CU CU A 601 1555 1555 2.01 LINK NE2 HIS A 434 CU CU A 602 1555 1555 1.89 LINK NE2 HIS A 436 CU CU A 603 1555 1555 2.01 LINK NE2 HIS A 502 CU CU A 603 1555 1555 2.08 LINK SG CYS A 503 CU CU A 601 1555 1555 2.16 LINK NE2 HIS A 504 CU CU A 604 1555 1555 2.08 LINK ND1 HIS A 508 CU CU A 601 1555 1555 2.02 LINK OD1BASP A 530 CA CA A 605 1555 1555 3.10 LINK OD1 ASP A 534 CA CA A 605 1555 1555 2.64 LINK OD2 ASP A 534 CA CA A 605 1555 1555 2.39 LINK CU CU A 602 O HOH A1094 1555 1555 2.61 LINK CU CU A 603 O OH A 629 1555 1555 2.15 LINK CU CU A 604 O OH A 629 1555 1555 2.58 LINK CA CA A 605 O HOH A 703 1555 1555 2.35 LINK CA CA A 605 O HOH A 781 1555 1555 2.40 LINK CA CA A 605 O HOH A 975 1555 8555 2.46 LINK CA CA A 605 O HOH A 999 1555 1555 2.27 LINK CA CA A 606 O HOH A 828 1555 1555 2.46 LINK CA CA A 606 O HOH A 858 1555 1555 2.39 LINK CA CA A 606 O HOH A1106 1555 1555 2.34 LINK CA CA A 606 O HOH A1124 1555 1555 2.50 LINK CA CA A 606 O HOH A1156 1555 1555 2.81 CISPEP 1 THR A 368 PRO A 369 0 -7.10 CRYST1 67.449 128.426 163.624 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014826 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006112 0.00000