HEADER HYDROLASE 04-DEC-17 6F60 TITLE THE X-RAY STRUCTURE OF BOVINE PANCREATIC RIBONUCLEASE IN COMPLEX WITH TITLE 2 A FIVE-COORDINATE PLATINUM(II) COMPOUND CONTAINING A SUGAR LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PANCREATIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNASE 1,RNASE A; COMPND 5 EC: 3.1.27.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS RIBONUCLEASE, PLATINUM(II) COMPOUND, FIVE-COORDINATE, SUGAR LIGAND, KEYWDS 2 CYTOTOXICITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MERLINO,G.FERRARO REVDAT 1 25-APR-18 6F60 0 JRNL AUTH M.E.CUCCIOLITO,A.D'AMORA,G.DE FEO,G.FERRARO,A.GIORGIO, JRNL AUTH 2 G.PETRUK,D.M.MONTI,A.MERLINO,F.RUFFO JRNL TITL FIVE-COORDINATE PLATINUM(II) COMPOUNDS CONTAINING SUGAR JRNL TITL 2 LIGANDS: SYNTHESIS, CHARACTERIZATION, CYTOTOXIC ACTIVITY, JRNL TITL 3 AND INTERACTION WITH BIOLOGICAL MACROMOLECULES. JRNL REF INORG CHEM V. 57 3133 2018 JRNL REFN ISSN 1520-510X JRNL PMID 29509011 JRNL DOI 10.1021/ACS.INORGCHEM.7B03118 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 76770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5421 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 298 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -1.59000 REMARK 3 B33 (A**2) : 2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2268 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1921 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3098 ; 2.534 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4536 ; 1.847 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 6.936 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;35.848 ;25.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;14.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.439 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2675 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 446 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 6.853 ; 2.227 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1132 ; 6.856 ; 2.226 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1460 ; 7.971 ; 3.365 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1461 ; 7.968 ; 3.365 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 5.490 ; 2.568 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 5.511 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1639 ; 6.094 ;14.383 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2973 ;11.148 ;32.759 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2973 ;11.148 ;32.758 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4185 ; 6.265 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 271 ;39.970 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4419 ;24.248 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6F60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200007800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80973 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 72.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4K 0.01 M SODIUM CITRATE PH REMARK 280 5.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.89000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.25950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.89000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.25950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 560 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 111 CD GLU B 111 OE2 0.088 REMARK 500 TYR B 115 CZ TYR B 115 CE2 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 85 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 14 81.75 -161.33 REMARK 500 ALA A 19 -149.01 -148.73 REMARK 500 ALA A 20 -60.87 -103.80 REMARK 500 SER A 22 110.43 -166.87 REMARK 500 HIS A 48 67.76 -110.01 REMARK 500 GLN A 60 -143.94 -98.58 REMARK 500 GLN A 60 -143.94 -100.59 REMARK 500 ASN A 71 41.32 -98.11 REMARK 500 TYR A 92 126.39 -35.29 REMARK 500 HIS B 48 60.74 -105.38 REMARK 500 GLN B 60 -134.26 -111.49 REMARK 500 GLN B 60 -134.26 -102.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 538 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 539 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 541 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 542 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 547 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 548 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 551 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 552 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 553 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A 554 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A 555 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH A 556 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH A 557 DISTANCE = 10.70 ANGSTROMS REMARK 525 HOH A 558 DISTANCE = 11.09 ANGSTROMS REMARK 525 HOH A 559 DISTANCE = 11.14 ANGSTROMS REMARK 525 HOH A 560 DISTANCE = 11.50 ANGSTROMS REMARK 525 HOH A 561 DISTANCE = 13.24 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 15.28 ANGSTROMS REMARK 525 HOH A 563 DISTANCE = 16.14 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 17.77 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 18.12 ANGSTROMS REMARK 525 HOH A 566 DISTANCE = 18.81 ANGSTROMS REMARK 525 HOH B 543 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 544 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 545 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 546 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 547 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 548 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 549 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 550 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 551 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B 552 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B 553 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 554 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 555 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 556 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B 557 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B 558 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH B 559 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH B 560 DISTANCE = 8.48 ANGSTROMS REMARK 525 HOH B 561 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH B 562 DISTANCE = 8.72 ANGSTROMS REMARK 525 HOH B 563 DISTANCE = 9.03 ANGSTROMS REMARK 525 HOH B 564 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH B 565 DISTANCE = 9.94 ANGSTROMS REMARK 525 HOH B 566 DISTANCE = 9.98 ANGSTROMS REMARK 525 HOH B 567 DISTANCE = 10.17 ANGSTROMS REMARK 525 HOH B 568 DISTANCE = 10.79 ANGSTROMS REMARK 525 HOH B 569 DISTANCE = 11.04 ANGSTROMS REMARK 525 HOH B 570 DISTANCE = 11.44 ANGSTROMS REMARK 525 HOH B 571 DISTANCE = 15.22 ANGSTROMS REMARK 525 HOH B 572 DISTANCE = 20.06 ANGSTROMS REMARK 525 HOH B 573 DISTANCE = 21.92 ANGSTROMS REMARK 525 HOH B 574 DISTANCE = 24.43 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DVW A 202 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 454 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 DVW A 202 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 DVW A 202 C11 102.5 REMARK 620 3 DVW A 202 C12 99.9 39.2 REMARK 620 4 DVW A 202 N1 78.0 167.3 128.1 REMARK 620 5 DVW A 202 N10 94.7 98.9 137.6 93.7 REMARK 620 6 DVW A 202 N3 161.6 95.9 93.7 83.9 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 DW5 B 201 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 105 NE2 REMARK 620 2 DW5 B 201 C12 100.4 REMARK 620 3 DW5 B 201 C11 159.8 99.2 REMARK 620 4 DW5 B 201 N10 84.7 141.9 76.9 REMARK 620 5 DW5 B 201 N1 95.2 135.7 74.0 80.4 REMARK 620 6 DW5 B 201 C13 91.1 33.6 102.6 109.4 168.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DVW A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DW5 B 201 DBREF 6F60 A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 6F60 B 1 124 UNP P61823 RNAS1_BOVIN 27 150 SEQRES 1 A 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 A 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 A 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 A 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 A 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 A 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 A 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 A 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 A 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 A 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 B 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 B 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 B 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 B 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 B 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 B 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 B 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 B 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 B 124 VAL HIS PHE ASP ALA SER VAL HET SO4 A 201 5 HET DVW A 202 27 HET DW5 B 201 20 HETNAM SO4 SULFATE ION HETNAM DVW FIVE-COORDINATE PLATINUM(II) COMPOUND HETNAM DW5 FIVE-COORDINATE PLATINUM(II) COMPOUND FORMUL 3 SO4 O4 S 2- FORMUL 4 DVW C27 H31 N7 O5 PT FORMUL 5 DW5 C17 H15 N2 PT FORMUL 6 HOH *540(H2 O) HELIX 1 AA1 THR A 3 MET A 13 1 11 HELIX 2 AA2 ASN A 24 ARG A 33 1 10 HELIX 3 AA3 SER A 50 ALA A 56 1 7 HELIX 4 AA4 VAL A 57 GLN A 60 5 4 HELIX 5 AA5 THR B 3 MET B 13 1 11 HELIX 6 AA6 ASN B 24 ARG B 33 1 10 HELIX 7 AA7 SER B 50 ALA B 56 1 7 HELIX 8 AA8 VAL B 57 GLN B 60 5 4 SHEET 1 AA1 5 VAL A 43 VAL A 47 0 SHEET 2 AA1 5 MET A 79 GLU A 86 -1 O THR A 82 N PHE A 46 SHEET 3 AA1 5 TYR A 97 GLU A 111 -1 O LYS A 98 N ARG A 85 SHEET 4 AA1 5 CYS A 72 GLN A 74 -1 N TYR A 73 O VAL A 108 SHEET 5 AA1 5 LYS A 61 VAL A 63 -1 N LYS A 61 O GLN A 74 SHEET 1 AA2 4 VAL A 43 VAL A 47 0 SHEET 2 AA2 4 MET A 79 GLU A 86 -1 O THR A 82 N PHE A 46 SHEET 3 AA2 4 TYR A 97 GLU A 111 -1 O LYS A 98 N ARG A 85 SHEET 4 AA2 4 VAL A 116 VAL A 124 -1 O VAL A 118 N ALA A 109 SHEET 1 AA3 5 VAL B 43 VAL B 47 0 SHEET 2 AA3 5 MET B 79 GLU B 86 -1 O THR B 82 N PHE B 46 SHEET 3 AA3 5 TYR B 97 GLU B 111 -1 O THR B 100 N ASP B 83 SHEET 4 AA3 5 CYS B 72 GLN B 74 -1 N TYR B 73 O VAL B 108 SHEET 5 AA3 5 LYS B 61 VAL B 63 -1 N VAL B 63 O CYS B 72 SHEET 1 AA4 4 VAL B 43 VAL B 47 0 SHEET 2 AA4 4 MET B 79 GLU B 86 -1 O THR B 82 N PHE B 46 SHEET 3 AA4 4 TYR B 97 GLU B 111 -1 O THR B 100 N ASP B 83 SHEET 4 AA4 4 VAL B 116 VAL B 124 -1 O VAL B 118 N ALA B 109 SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.00 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.05 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.04 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.08 SSBOND 5 CYS B 26 CYS B 84 1555 1555 2.00 SSBOND 6 CYS B 40 CYS B 95 1555 1555 2.10 SSBOND 7 CYS B 58 CYS B 110 1555 1555 2.06 SSBOND 8 CYS B 65 CYS B 72 1555 1555 2.09 LINK NE2 HIS A 105 PT DVW A 202 1555 1555 1.98 LINK NE2 HIS B 105 PT DW5 B 201 1555 1555 2.15 CISPEP 1 TYR A 92 PRO A 93 0 2.52 CISPEP 2 TYR A 92 PRO A 93 0 9.94 CISPEP 3 ASN A 113 PRO A 114 0 7.81 CISPEP 4 TYR B 92 PRO B 93 0 15.45 CISPEP 5 ASN B 113 PRO B 114 0 1.45 SITE 1 AC1 11 GLN A 11 HIS A 12 LYS A 41 VAL A 118 SITE 2 AC1 11 HIS A 119 PHE A 120 HOH A 306 HOH A 347 SITE 3 AC1 11 HOH A 352 HOH A 371 HOH A 454 SITE 1 AC2 10 GLN A 74 TYR A 76 THR A 78 HIS A 105 SITE 2 AC2 10 ASN A 113 PRO A 114 VAL A 124 HOH A 385 SITE 3 AC2 10 HOH A 450 HOH A 516 SITE 1 AC3 11 ASN A 67 HOH A 363 HOH A 370 TYR B 76 SITE 2 AC3 11 THR B 78 HIS B 105 HOH B 305 HOH B 409 SITE 3 AC3 11 HOH B 469 HOH B 514 HOH B 523 CRYST1 99.780 32.519 72.337 90.00 90.19 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010022 0.000000 0.000033 0.00000 SCALE2 0.000000 0.030751 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013824 0.00000