HEADER FLAVOPROTEIN 11-DEC-17 6F7L TITLE CRYSTAL STRUCTURE OF LKCE R326Q MUTANT IN COMPLEX WITH ITS SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINE OXIDASE LKCE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ROCHEI; SOURCE 3 ORGANISM_COMMON: STREPTOMYCES PARVULLUS; SOURCE 4 ORGANISM_TAXID: 1928; SOURCE 5 GENE: LKCE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMINE OXYDASE, CYCLASE, POST-PKS ENZYME, TAYLORING ENZYME, KEYWDS 2 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.DORIVAL,F.RISSER,C.JACOB,S.COLLIN,G.DRAGER,A.KIRSCHNING,C.PARIS, AUTHOR 2 B.CHAGOT,A.GRUEZ,K.J.WEISSMAN REVDAT 3 17-JAN-24 6F7L 1 COMPND HETNAM REVDAT 2 10-OCT-18 6F7L 1 JRNL REVDAT 1 19-SEP-18 6F7L 0 JRNL AUTH J.DORIVAL,F.RISSER,C.JACOB,S.COLLIN,G.DRAGER,C.PARIS, JRNL AUTH 2 B.CHAGOT,A.KIRSCHNING,A.GRUEZ,K.J.WEISSMAN JRNL TITL INSIGHTS INTO A DUAL FUNCTION AMIDE OXIDASE/MACROCYCLASE JRNL TITL 2 FROM LANKACIDIN BIOSYNTHESIS. JRNL REF NAT COMMUN V. 9 3998 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30266997 JRNL DOI 10.1038/S41467-018-06323-W REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 235 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -1.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.397 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.426 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7190 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6633 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9757 ; 1.790 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15247 ; 1.479 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 855 ; 4.556 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;40.924 ;23.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1108 ;16.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;18.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1041 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8109 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1723 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 438 B 4 438 49524 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6F7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.406 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 6F32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 160 MM CALCIUM ACETATE, REMARK 280 100 MM BIS TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.32750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.77700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.77700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.16375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.77700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.77700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.49125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.77700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.77700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.16375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.77700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.77700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 117.49125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.32750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 SER A 137 REMARK 465 TYR A 138 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 SER B 133 REMARK 465 GLY B 134 REMARK 465 ASP B 135 REMARK 465 ASP B 136 REMARK 465 SER B 137 REMARK 465 TYR B 138 REMARK 465 LYS B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 64 -31.23 -147.93 REMARK 500 THR A 132 72.29 -108.96 REMARK 500 ALA A 160 -62.13 -125.77 REMARK 500 GLU B 64 -30.99 -147.26 REMARK 500 PRO B 131 -1.60 -59.61 REMARK 500 ALA B 160 -62.86 -124.98 REMARK 500 ASP B 278 -1.99 70.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CWH A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CWH B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6F32 RELATED DB: PDB REMARK 900 STRUCTURE OF LKCE WILD TYPE WITH SUBSTRATE ANALOGUES DBREF 6F7L A 1 438 UNP Q83X90 Q83X90_STRRO 1 438 DBREF 6F7L B 1 438 UNP Q83X90 Q83X90_STRRO 1 438 SEQADV 6F7L GLY A -3 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L PRO A -2 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L GLY A -1 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L SER A 0 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L GLN A 54 UNP Q83X90 ARG 54 CONFLICT SEQADV 6F7L GLN A 326 UNP Q83X90 ARG 326 ENGINEERED MUTATION SEQADV 6F7L PRO A 424 UNP Q83X90 LEU 424 CONFLICT SEQADV 6F7L GLY B -3 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L PRO B -2 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L GLY B -1 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L SER B 0 UNP Q83X90 EXPRESSION TAG SEQADV 6F7L GLN B 54 UNP Q83X90 ARG 54 CONFLICT SEQADV 6F7L GLN B 326 UNP Q83X90 ARG 326 ENGINEERED MUTATION SEQADV 6F7L PRO B 424 UNP Q83X90 LEU 424 CONFLICT SEQRES 1 A 442 GLY PRO GLY SER MET THR VAL VAL GLU ALA LYS SER ARG SEQRES 2 A 442 ILE ALA VAL VAL GLY GLY GLY GLY SER GLY SER VAL ALA SEQRES 3 A 442 ALA TRP LEU LEU ALA ARG ARG HIS ASP VAL THR LEU PHE SEQRES 4 A 442 GLU ALA ASP GLU TYR LEU GLY GLY HIS ALA TYR SER HIS SEQRES 5 A 442 PRO VAL GLU THR ASP GLN GLY THR LEU HIS VAL ASP MET SEQRES 6 A 442 GLY VAL GLU HIS PHE ASN GLU LYS LEU SER PRO ASN LEU SEQRES 7 A 442 PHE ARG LEU LEU THR ASP PHE GLY ILE GLY THR TYR VAL SEQRES 8 A 442 ALA PRO SER SER VAL HIS VAL ASP PHE PRO GLY GLU GLN SEQRES 9 A 442 GLN SER TRP ASN ASN LEU ASP PHE LEU GLY GLU LEU ARG SEQRES 10 A 442 GLU GLU LEU HIS GLU GLU PHE ASP ARG PHE HIS GLN GLU SEQRES 11 A 442 MET ASN GLN LEU PRO THR SER GLY ASP ASP SER TYR LYS SEQRES 12 A 442 GLN MET SER ILE GLY GLU TYR LEU ASP LYS HIS GLY TYR SEQRES 13 A 442 SER LYS SER PHE LYS TYR LYS ALA MET ASN PRO ILE LEU SEQRES 14 A 442 SER ILE TYR SER GLY CYS HIS ALA PRO SER LEU ASP TYR SEQRES 15 A 442 ASN LEU MET TYR VAL ALA LEU SER PHE SER MET ASN LEU SEQRES 16 A 442 LEU SER PHE PHE SER ALA GLY TYR TRP ARG LYS ALA GLN SEQRES 17 A 442 GLY GLY ILE HIS SER TYR LEU ALA ARG ILE GLU SER ASP SEQRES 18 A 442 LEU GLY GLU ARG VAL ARG LEU ASN THR PRO VAL GLU ALA SEQRES 19 A 442 VAL VAL PRO THR GLN SER GLY VAL THR VAL LEU ALA GLY SEQRES 20 A 442 GLY GLN GLU HIS HIS PHE ASP GLN VAL VAL PHE ALA THR SEQRES 21 A 442 HIS ALA ASP VAL THR LEU ARG LEU LEU ARG THR SER ASP SEQRES 22 A 442 GLN GLN TYR ARG ASP LEU LEU GLY ASP PHE ALA TYR VAL SEQRES 23 A 442 PRO VAL GLU SER VAL LEU HIS GLN ASP GLU SER TRP LEU SEQRES 24 A 442 SER PRO ALA GLY GLY GLY ALA TYR CYS GLN PHE ARG MET SEQRES 25 A 442 PRO GLU GLY PHE GLU LEU ALA ARG ALA GLU GLU GLN MET SEQRES 26 A 442 GLY SER LEU THR GLN ASN CYS ASN VAL LEU HIS PRO TYR SEQRES 27 A 442 ARG LYS VAL SER SER PRO ILE LEU ILE THR PHE ASP PRO SEQRES 28 A 442 GLN GLU ASP VAL ASP PRO GLU ARG VAL ILE VAL ARG ARG SEQRES 29 A 442 GLU TRP LYS LEU PRO GLN LEU ARG PRO VAL ASP VAL ARG SEQRES 30 A 442 ARG LYS LYS ARG LEU HIS GLU ILE GLN GLY LEU ASN GLY SEQRES 31 A 442 LEU TRP PHE CYS GLY THR ASP THR SER VAL THR GLY HIS SEQRES 32 A 442 GLU GLY ALA ILE VAL SER GLY MET VAL ILE ALA ASP ARG SEQRES 33 A 442 LEU GLY VAL PRO HIS PRO PHE PRO ASP ASP ALA PRO ALA SEQRES 34 A 442 ALA ALA GLN PHE ARG GLY ILE LYS GLU PHE MET GLY VAL SEQRES 1 B 442 GLY PRO GLY SER MET THR VAL VAL GLU ALA LYS SER ARG SEQRES 2 B 442 ILE ALA VAL VAL GLY GLY GLY GLY SER GLY SER VAL ALA SEQRES 3 B 442 ALA TRP LEU LEU ALA ARG ARG HIS ASP VAL THR LEU PHE SEQRES 4 B 442 GLU ALA ASP GLU TYR LEU GLY GLY HIS ALA TYR SER HIS SEQRES 5 B 442 PRO VAL GLU THR ASP GLN GLY THR LEU HIS VAL ASP MET SEQRES 6 B 442 GLY VAL GLU HIS PHE ASN GLU LYS LEU SER PRO ASN LEU SEQRES 7 B 442 PHE ARG LEU LEU THR ASP PHE GLY ILE GLY THR TYR VAL SEQRES 8 B 442 ALA PRO SER SER VAL HIS VAL ASP PHE PRO GLY GLU GLN SEQRES 9 B 442 GLN SER TRP ASN ASN LEU ASP PHE LEU GLY GLU LEU ARG SEQRES 10 B 442 GLU GLU LEU HIS GLU GLU PHE ASP ARG PHE HIS GLN GLU SEQRES 11 B 442 MET ASN GLN LEU PRO THR SER GLY ASP ASP SER TYR LYS SEQRES 12 B 442 GLN MET SER ILE GLY GLU TYR LEU ASP LYS HIS GLY TYR SEQRES 13 B 442 SER LYS SER PHE LYS TYR LYS ALA MET ASN PRO ILE LEU SEQRES 14 B 442 SER ILE TYR SER GLY CYS HIS ALA PRO SER LEU ASP TYR SEQRES 15 B 442 ASN LEU MET TYR VAL ALA LEU SER PHE SER MET ASN LEU SEQRES 16 B 442 LEU SER PHE PHE SER ALA GLY TYR TRP ARG LYS ALA GLN SEQRES 17 B 442 GLY GLY ILE HIS SER TYR LEU ALA ARG ILE GLU SER ASP SEQRES 18 B 442 LEU GLY GLU ARG VAL ARG LEU ASN THR PRO VAL GLU ALA SEQRES 19 B 442 VAL VAL PRO THR GLN SER GLY VAL THR VAL LEU ALA GLY SEQRES 20 B 442 GLY GLN GLU HIS HIS PHE ASP GLN VAL VAL PHE ALA THR SEQRES 21 B 442 HIS ALA ASP VAL THR LEU ARG LEU LEU ARG THR SER ASP SEQRES 22 B 442 GLN GLN TYR ARG ASP LEU LEU GLY ASP PHE ALA TYR VAL SEQRES 23 B 442 PRO VAL GLU SER VAL LEU HIS GLN ASP GLU SER TRP LEU SEQRES 24 B 442 SER PRO ALA GLY GLY GLY ALA TYR CYS GLN PHE ARG MET SEQRES 25 B 442 PRO GLU GLY PHE GLU LEU ALA ARG ALA GLU GLU GLN MET SEQRES 26 B 442 GLY SER LEU THR GLN ASN CYS ASN VAL LEU HIS PRO TYR SEQRES 27 B 442 ARG LYS VAL SER SER PRO ILE LEU ILE THR PHE ASP PRO SEQRES 28 B 442 GLN GLU ASP VAL ASP PRO GLU ARG VAL ILE VAL ARG ARG SEQRES 29 B 442 GLU TRP LYS LEU PRO GLN LEU ARG PRO VAL ASP VAL ARG SEQRES 30 B 442 ARG LYS LYS ARG LEU HIS GLU ILE GLN GLY LEU ASN GLY SEQRES 31 B 442 LEU TRP PHE CYS GLY THR ASP THR SER VAL THR GLY HIS SEQRES 32 B 442 GLU GLY ALA ILE VAL SER GLY MET VAL ILE ALA ASP ARG SEQRES 33 B 442 LEU GLY VAL PRO HIS PRO PHE PRO ASP ASP ALA PRO ALA SEQRES 34 B 442 ALA ALA GLN PHE ARG GLY ILE LYS GLU PHE MET GLY VAL HET FAD A 501 53 HET CA A 502 1 HET CA A 503 1 HET CWH A 504 36 HET GOL A 505 6 HET GOL A 506 6 HET FAD B 501 53 HET CA B 502 1 HET ACT B 503 4 HET ACT B 504 4 HET ACT B 505 4 HET CWH B 506 36 HET GOL B 507 6 HET GOL B 508 6 HET GOL B 509 6 HET GOL B 510 6 HET GOL B 511 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CA CALCIUM ION HETNAM CWH [(2~{S},5~{R},8~{S},11~{S})-1-[(2~{R},3~{R},5~{R}, HETNAM 2 CWH 6~{S})-3,5-DIMETHYL-6-OXIDANYL-4-OXIDANYLIDENE-OXAN-2- HETNAM 3 CWH YL]-5,11-DIMETH YL-8-OXIDANYL-13-[[(2~{S})-2- HETNAM 4 CWH OXIDANYLPROPANOYL]AMINO]TRIDECAN-2-YL] ETHANOATE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN CWH LC-KA05 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 CA 3(CA 2+) FORMUL 6 CWH 2(C27 H49 N O8) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 11 ACT 3(C2 H3 O2 1-) FORMUL 20 HOH *230(H2 O) HELIX 1 AA1 GLY A 16 ALA A 27 1 12 HELIX 2 AA2 SER A 71 PHE A 81 1 11 HELIX 3 AA3 GLY A 110 LEU A 130 1 21 HELIX 4 AA4 SER A 142 HIS A 150 1 9 HELIX 5 AA5 SER A 153 ALA A 160 1 8 HELIX 6 AA6 ALA A 160 GLY A 170 1 11 HELIX 7 AA7 PRO A 174 TYR A 178 5 5 HELIX 8 AA8 ASN A 179 MET A 189 1 11 HELIX 9 AA9 ILE A 207 GLY A 219 1 13 HELIX 10 AB1 HIS A 257 LEU A 265 1 9 HELIX 11 AB2 GLN A 270 GLY A 277 1 8 HELIX 12 AB3 ASP A 291 LEU A 295 5 5 HELIX 13 AB4 GLU A 313 GLN A 320 5 8 HELIX 14 AB5 ASN A 329 ARG A 335 5 7 HELIX 15 AB6 ARG A 368 LEU A 378 1 11 HELIX 16 AB7 HIS A 379 GLN A 382 5 4 HELIX 17 AB8 GLY A 383 ASN A 385 5 3 HELIX 18 AB9 GLY A 391 SER A 395 5 5 HELIX 19 AC1 GLY A 398 LEU A 413 1 16 HELIX 20 AC2 ASP A 422 GLY A 437 1 16 HELIX 21 AC3 GLY B 16 ALA B 27 1 12 HELIX 22 AC4 SER B 71 PHE B 81 1 11 HELIX 23 AC5 GLY B 110 LEU B 130 1 21 HELIX 24 AC6 SER B 142 HIS B 150 1 9 HELIX 25 AC7 SER B 153 ALA B 160 1 8 HELIX 26 AC8 ALA B 160 GLY B 170 1 11 HELIX 27 AC9 PRO B 174 TYR B 178 5 5 HELIX 28 AD1 ASN B 179 MET B 189 1 11 HELIX 29 AD2 ILE B 207 GLY B 219 1 13 HELIX 30 AD3 HIS B 257 LEU B 265 1 9 HELIX 31 AD4 GLN B 270 GLY B 277 1 8 HELIX 32 AD5 ASP B 291 LEU B 295 5 5 HELIX 33 AD6 GLU B 313 ALA B 317 5 5 HELIX 34 AD7 ASN B 329 ARG B 335 5 7 HELIX 35 AD8 ARG B 368 ARG B 377 1 10 HELIX 36 AD9 LEU B 378 GLN B 382 5 5 HELIX 37 AE1 GLY B 383 ASN B 385 5 3 HELIX 38 AE2 GLY B 391 SER B 395 5 5 HELIX 39 AE3 GLY B 398 LEU B 413 1 16 HELIX 40 AE4 ASP B 422 GLY B 437 1 16 SHEET 1 AA1 5 VAL A 222 ARG A 223 0 SHEET 2 AA1 5 ASP A 31 PHE A 35 1 N LEU A 34 O ARG A 223 SHEET 3 AA1 5 ARG A 9 VAL A 13 1 N VAL A 12 O THR A 33 SHEET 4 AA1 5 GLN A 251 PHE A 254 1 O VAL A 253 N ALA A 11 SHEET 5 AA1 5 LEU A 387 PHE A 389 1 O TRP A 388 N PHE A 254 SHEET 1 AA2 2 SER A 47 THR A 52 0 SHEET 2 AA2 2 GLY A 55 ASP A 60 -1 O LEU A 57 N VAL A 50 SHEET 1 AA3 2 THR A 85 VAL A 87 0 SHEET 2 AA3 2 ARG A 201 ALA A 203 -1 O LYS A 202 N TYR A 86 SHEET 1 AA4 7 SER A 102 ASN A 104 0 SHEET 2 AA4 7 VAL A 92 ASP A 95 -1 N VAL A 94 O TRP A 103 SHEET 3 AA4 7 CYS A 304 ARG A 307 1 O PHE A 306 N HIS A 93 SHEET 4 AA4 7 SER A 323 ASN A 327 -1 O THR A 325 N GLN A 305 SHEET 5 AA4 7 LEU A 342 PHE A 345 -1 O PHE A 345 N LEU A 324 SHEET 6 AA4 7 TYR A 281 HIS A 289 -1 N VAL A 287 O THR A 344 SHEET 7 AA4 7 VAL A 356 PRO A 365 -1 O TRP A 362 N VAL A 284 SHEET 1 AA5 3 VAL A 228 PRO A 233 0 SHEET 2 AA5 3 VAL A 238 ALA A 242 -1 O LEU A 241 N GLU A 229 SHEET 3 AA5 3 GLN A 245 PHE A 249 -1 O HIS A 247 N VAL A 240 SHEET 1 AA6 5 VAL B 222 ARG B 223 0 SHEET 2 AA6 5 ASP B 31 PHE B 35 1 N LEU B 34 O ARG B 223 SHEET 3 AA6 5 ARG B 9 VAL B 13 1 N VAL B 12 O THR B 33 SHEET 4 AA6 5 GLN B 251 PHE B 254 1 O VAL B 253 N ALA B 11 SHEET 5 AA6 5 LEU B 387 PHE B 389 1 O TRP B 388 N PHE B 254 SHEET 1 AA7 2 SER B 47 THR B 52 0 SHEET 2 AA7 2 GLY B 55 ASP B 60 -1 O LEU B 57 N VAL B 50 SHEET 1 AA8 2 THR B 85 VAL B 87 0 SHEET 2 AA8 2 ARG B 201 ALA B 203 -1 O LYS B 202 N TYR B 86 SHEET 1 AA9 7 SER B 102 ASN B 104 0 SHEET 2 AA9 7 VAL B 92 ASP B 95 -1 N VAL B 94 O TRP B 103 SHEET 3 AA9 7 CYS B 304 ARG B 307 1 O PHE B 306 N HIS B 93 SHEET 4 AA9 7 SER B 323 ASN B 327 -1 O THR B 325 N GLN B 305 SHEET 5 AA9 7 LEU B 342 PHE B 345 -1 O PHE B 345 N LEU B 324 SHEET 6 AA9 7 TYR B 281 HIS B 289 -1 N VAL B 287 O THR B 344 SHEET 7 AA9 7 VAL B 356 PRO B 365 -1 O TRP B 362 N VAL B 284 SHEET 1 AB1 3 VAL B 228 PRO B 233 0 SHEET 2 AB1 3 VAL B 238 ALA B 242 -1 O LEU B 241 N GLU B 229 SHEET 3 AB1 3 GLN B 245 PHE B 249 -1 O HIS B 247 N VAL B 240 SITE 1 AC1 27 GLY A 14 GLY A 16 GLY A 17 SER A 18 SITE 2 AC1 27 PHE A 35 GLU A 36 ALA A 37 GLY A 42 SITE 3 AC1 27 GLY A 43 HIS A 44 GLY A 62 VAL A 63 SITE 4 AC1 27 GLU A 64 HIS A 65 VAL A 228 THR A 256 SITE 5 AC1 27 HIS A 257 LEU A 364 GLY A 391 THR A 392 SITE 6 AC1 27 GLY A 398 HIS A 399 CWH A 504 HOH A 620 SITE 7 AC1 27 HOH A 622 HOH A 625 HOH A 633 SITE 1 AC2 1 GLU A 111 SITE 1 AC3 1 GLN A 320 SITE 1 AC4 18 GLY A 62 GLU A 64 HIS A 65 LEU A 70 SITE 2 AC4 18 ILE A 167 TYR A 168 ASN A 179 TYR A 182 SITE 3 AC4 18 LEU A 185 TRP A 200 GLN A 326 PHE A 345 SITE 4 AC4 18 VAL A 396 THR A 397 GLY A 398 FAD A 501 SITE 5 AC4 18 HOH A 601 HOH A 643 SITE 1 AC5 10 ASN A 162 PRO A 163 SER A 166 GLY A 170 SITE 2 AC5 10 CYS A 171 ALA A 173 SER A 175 PHE A 306 SITE 3 AC5 10 MET A 321 GLY A 322 SITE 1 AC6 8 HIS A 124 ASN A 128 PHE A 187 SER A 188 SITE 2 AC6 8 HOH A 609 LYS B 69 ASN B 190 TYR B 199 SITE 1 AC7 31 GLY B 14 GLY B 16 GLY B 17 SER B 18 SITE 2 AC7 31 PHE B 35 GLU B 36 ALA B 37 GLY B 42 SITE 3 AC7 31 GLY B 43 HIS B 44 GLY B 62 VAL B 63 SITE 4 AC7 31 GLU B 64 HIS B 65 PRO B 227 VAL B 228 SITE 5 AC7 31 HIS B 257 TRP B 362 LEU B 364 GLY B 391 SITE 6 AC7 31 THR B 392 GLY B 398 HIS B 399 ALA B 402 SITE 7 AC7 31 CWH B 506 HOH B 608 HOH B 616 HOH B 618 SITE 8 AC7 31 HOH B 634 HOH B 635 HOH B 646 SITE 1 AC8 4 GLU A 313 VAL B 50 GLU B 51 ILE B 357 SITE 1 AC9 3 GLN B 290 ARG B 355 VAL B 356 SITE 1 AD1 5 HIS B 93 ASN B 104 LEU B 106 ALA B 298 SITE 2 AD1 5 GLY B 299 SITE 1 AD2 16 GLU B 64 HIS B 65 LEU B 70 ILE B 167 SITE 2 AD2 16 TYR B 168 ASN B 179 LEU B 185 TRP B 200 SITE 3 AD2 16 GLN B 326 VAL B 396 THR B 397 GLN B 428 SITE 4 AD2 16 FAD B 501 HOH B 604 HOH B 620 HOH B 641 SITE 1 AD3 8 ASN A 190 TYR A 199 HIS B 124 ASN B 128 SITE 2 AD3 8 PHE B 187 ASN B 190 SER B 193 SER B 196 SITE 1 AD4 3 GLU B 292 VAL B 337 SER B 338 SITE 1 AD5 4 GLY B 82 ILE B 83 GLY B 84 GLN B 204 SITE 1 AD6 2 ARG B 213 SER B 216 SITE 1 AD7 8 HIS A 117 GLU A 118 ASP A 121 HOH A 616 SITE 2 AD7 8 THR B 85 TYR B 86 GLN B 204 HIS B 332 CRYST1 125.554 125.554 156.655 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007965 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006383 0.00000