HEADER SIGNALING PROTEIN 11-DEC-17 6F7M TITLE NMR STRUCTURE OF EPHA2-SAM STAPLED PEPTIDES (S13ST) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FRAGMENT 945-969 OF HUMAN EPHA2 RECEPTOR (UNIPROT COMPND 8 ENTRY P29317) WITH I958 AND L962 MUTATED IN MK8 (=(S)-2-(4'-PENTENYL) COMPND 9 ALANINE) SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS EPHRIN RECEPTOR, SAM DOMAIN, STAPLED PEPTIDE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.A.MERCURIO,M.LEONE REVDAT 4 15-NOV-23 6F7M 1 ATOM REVDAT 3 14-JUN-23 6F7M 1 REMARK REVDAT 2 08-MAY-19 6F7M 1 REMARK REVDAT 1 01-AUG-18 6F7M 0 JRNL AUTH F.A.MERCURIO,L.PIRONE,C.DI NATALE,D.MARASCO,E.M.PEDONE, JRNL AUTH 2 M.LEONE JRNL TITL SAM DOMAIN-BASED STAPLED PEPTIDES: STRUCTURAL ANALYSIS AND JRNL TITL 2 INTERACTION STUDIES WITH THE SAM DOMAINS FROM THE EPHA2 JRNL TITL 3 RECEPTOR AND THE LIPID PHOSPHATASE SHIP2. JRNL REF BIOORG. CHEM. V. 80 602 2018 JRNL REFN ISSN 1090-2120 JRNL PMID 30036816 JRNL DOI 10.1016/J.BIOORG.2018.07.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007767. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 650 UM S13ST, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, XEASY, UCSF CHIMERA REMARK 210 1.10.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 7 83.65 59.00 REMARK 500 1 LYS A 23 -52.46 -135.33 REMARK 500 2 LYS A 13 -67.10 -133.84 REMARK 500 3 LYS A 23 -47.02 -145.14 REMARK 500 4 VAL A 6 74.91 58.87 REMARK 500 4 PRO A 9 82.42 -69.90 REMARK 500 4 LYS A 13 -75.39 69.22 REMARK 500 4 LYS A 23 -44.07 -152.34 REMARK 500 6 ARG A 3 -60.38 -92.85 REMARK 500 6 ARG A 7 94.01 57.27 REMARK 500 6 LYS A 23 -56.39 -133.22 REMARK 500 7 ARG A 7 65.50 60.66 REMARK 500 7 GLN A 12 30.08 -146.54 REMARK 500 7 LYS A 23 -58.57 -129.34 REMARK 500 8 ARG A 3 56.74 -91.05 REMARK 500 8 PRO A 9 -168.19 -69.68 REMARK 500 8 LYS A 23 -47.58 -139.14 REMARK 500 9 ILE A 4 84.60 56.24 REMARK 500 9 HIS A 11 56.25 -113.94 REMARK 500 9 GLN A 12 -78.73 -128.57 REMARK 500 9 LYS A 13 -79.65 66.29 REMARK 500 9 LYS A 23 -40.70 -132.13 REMARK 500 10 ARG A 7 105.17 -178.32 REMARK 500 10 PRO A 9 -168.27 -69.73 REMARK 500 10 LYS A 13 -69.41 71.56 REMARK 500 11 ARG A 7 176.40 59.70 REMARK 500 11 PRO A 9 -173.35 -69.93 REMARK 500 11 HIS A 11 -74.00 -147.27 REMARK 500 11 GLN A 12 26.18 -159.46 REMARK 500 11 LYS A 23 -43.31 -136.53 REMARK 500 12 ARG A 7 171.21 61.13 REMARK 500 12 PRO A 9 -179.92 -69.77 REMARK 500 12 HIS A 11 176.21 59.60 REMARK 500 14 VAL A 6 84.92 62.69 REMARK 500 14 ARG A 7 34.00 -171.59 REMARK 500 14 LYS A 23 -44.89 -136.59 REMARK 500 15 ARG A 3 47.48 -101.95 REMARK 500 15 ILE A 4 86.49 57.35 REMARK 500 15 VAL A 6 132.89 -173.98 REMARK 500 15 HIS A 11 -69.91 -96.33 REMARK 500 15 LYS A 13 -68.75 72.38 REMARK 500 16 ILE A 4 -37.51 -172.20 REMARK 500 16 GLN A 12 30.04 -154.39 REMARK 500 16 LYS A 23 -43.36 -136.91 REMARK 500 17 ILE A 4 84.41 52.88 REMARK 500 17 ARG A 7 74.79 57.83 REMARK 500 17 LYS A 23 -43.90 -136.58 REMARK 500 18 ILE A 4 -67.87 -90.73 REMARK 500 18 ARG A 7 174.48 62.53 REMARK 500 18 GLN A 12 -46.01 -175.04 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34138 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF AN EPHA2-SAM FRAGMENT REMARK 900 RELATED ID: 6F7N RELATED DB: PDB REMARK 900 S13STSHORT REMARK 900 RELATED ID: 6F7O RELATED DB: PDB REMARK 900 A5ST REMARK 900 RELATED ID: 34213 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF EPHA2-SAM STAPLED PEPTIDES (S13ST) DBREF 6F7M A 2 26 UNP P29317 EPHA2_HUMAN 945 969 SEQADV 6F7M ACE A 1 UNP P29317 ACETYLATION SEQADV 6F7M NH2 A 27 UNP P29317 AMIDATION SEQRES 1 A 27 ACE LYS ARG ILE GLY VAL ARG LEU PRO GLY HIS GLN LYS SEQRES 2 A 27 ARG MK8 ALA TYR SER MK8 LEU GLY LEU LYS ASP GLN VAL SEQRES 3 A 27 NH2 MODRES 6F7M MK8 A 15 ILE MODIFIED RESIDUE MODRES 6F7M MK8 A 19 LEU MODIFIED RESIDUE HET ACE A 1 6 HET MK8 A 15 20 HET MK8 A 19 20 HET NH2 A 27 3 HETNAM ACE ACETYL GROUP HETNAM MK8 2-METHYL-L-NORLEUCINE HETNAM NH2 AMINO GROUP FORMUL 1 ACE C2 H4 O FORMUL 1 MK8 2(C7 H15 N O2) FORMUL 1 NH2 H2 N HELIX 1 AA1 GLN A 12 GLY A 21 1 10 LINK C ACE A 1 N LYS A 2 1555 1555 1.33 LINK C ARG A 14 N MK8 A 15 1555 1555 1.37 LINK C MK8 A 15 N ALA A 16 1555 1555 1.36 LINK CE MK8 A 15 CE MK8 A 19 1555 1555 1.34 LINK C SER A 18 N MK8 A 19 1555 1555 1.36 LINK C MK8 A 19 N LEU A 20 1555 1555 1.36 LINK C VAL A 26 N NH2 A 27 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C ACE A 1 -2.838 19.319 7.967 1.00 1.41 C HETATM 2 O ACE A 1 -2.753 19.973 6.928 1.00 54.13 O HETATM 3 CH3 ACE A 1 -4.149 18.985 8.589 1.00 11.32 C HETATM 4 H1 ACE A 1 -4.360 19.691 9.392 1.00 0.00 H HETATM 5 H2 ACE A 1 -4.934 19.045 7.835 1.00 11.05 H HETATM 6 H3 ACE A 1 -4.111 17.974 8.995 1.00 31.00 H