HEADER LIPID BINDING PROTEIN 13-DEC-17 6F8E TITLE PH DOMAIN FROM TGAPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII (STRAIN ATCC 50611 / ME49); SOURCE 3 ORGANISM_TAXID: 508771; SOURCE 4 STRAIN: ATCC 50611 / ME49; SOURCE 5 GENE: TGME49_249970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PH DOMAIN, PHOSPHATIDIC ACID BINDING, MEMBRANE ASSOCIATION, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.DARVILL,B.LIU,S.MATTHEWS,D.SOLDATI-FAVRE,S.ROUSE,S.BENJAMIN, AUTHOR 2 T.BLAKE,D.J.DUBOIS,P.M.HAMMOUDI,P.PINO REVDAT 3 19-JUN-24 6F8E 1 REMARK REVDAT 2 14-JUN-23 6F8E 1 REMARK REVDAT 1 30-JAN-19 6F8E 0 JRNL AUTH N.DARVILL,D.J.DUBOIS,S.L.ROUSE,P.M.HAMMOUDI,T.BLAKE, JRNL AUTH 2 S.BENJAMIN,B.LIU,D.SOLDATI-FAVRE,S.MATTHEWS JRNL TITL STRUCTURAL BASIS OF PHOSPHATIDIC ACID SENSING BY APH IN JRNL TITL 2 APICOMPLEXAN PARASITES. JRNL REF STRUCTURE V. 26 1059 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29910186 JRNL DOI 10.1016/J.STR.2018.05.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007841. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 730 UM [U-100% 15N]; [U-100% REMARK 210 13C] C-TERMINAL PH DOMAIN FROM REMARK 210 TGAPH, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HBHA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 48 OD2 ASP A 66 1.59 REMARK 500 HZ2 LYS A 29 OE2 GLU A 113 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 35 -168.26 -169.87 REMARK 500 1 PHE A 38 -178.84 177.72 REMARK 500 1 THR A 45 -172.01 -175.14 REMARK 500 1 SER A 47 -179.20 -66.40 REMARK 500 1 ALA A 62 107.15 -52.38 REMARK 500 1 GLN A 65 -16.11 71.26 REMARK 500 1 ASN A 88 40.66 33.28 REMARK 500 1 ASN A 98 -64.76 95.21 REMARK 500 1 PRO A 111 3.72 -68.81 REMARK 500 2 THR A 35 -168.15 -168.98 REMARK 500 2 PHE A 38 -171.04 175.15 REMARK 500 2 THR A 45 -172.55 -177.01 REMARK 500 2 LYS A 59 50.52 -144.02 REMARK 500 2 GLN A 65 -42.96 70.30 REMARK 500 2 ASN A 88 44.53 33.03 REMARK 500 2 ASN A 98 -56.42 165.34 REMARK 500 2 PRO A 99 173.93 -58.90 REMARK 500 2 PRO A 111 4.84 -62.49 REMARK 500 2 MET A 130 93.38 -69.18 REMARK 500 3 THR A 35 -165.84 -169.19 REMARK 500 3 PHE A 38 -174.88 -179.24 REMARK 500 3 THR A 45 -179.88 -174.05 REMARK 500 3 GLN A 65 -49.06 71.71 REMARK 500 3 ASN A 98 -65.74 94.18 REMARK 500 3 PRO A 99 171.65 -58.73 REMARK 500 3 PRO A 111 5.94 -67.20 REMARK 500 3 SER A 129 32.20 -91.02 REMARK 500 4 PHE A 38 178.19 178.64 REMARK 500 4 THR A 45 -171.43 177.21 REMARK 500 4 ALA A 64 58.75 -98.02 REMARK 500 4 GLN A 65 -31.24 72.62 REMARK 500 4 GLN A 85 -174.39 -61.72 REMARK 500 4 ASN A 88 43.52 32.75 REMARK 500 4 ASN A 98 -54.46 168.22 REMARK 500 5 THR A 35 -166.89 -168.77 REMARK 500 5 PHE A 38 -178.49 174.81 REMARK 500 5 THR A 45 -172.02 -176.36 REMARK 500 5 LYS A 59 -72.59 -82.05 REMARK 500 5 GLN A 65 -39.26 71.44 REMARK 500 5 ARG A 67 60.98 68.31 REMARK 500 5 GLN A 85 -176.02 -60.29 REMARK 500 5 ASN A 88 51.69 37.21 REMARK 500 5 ASN A 98 -55.31 163.06 REMARK 500 5 PRO A 99 171.00 -59.07 REMARK 500 6 THR A 35 -165.81 -169.29 REMARK 500 6 PHE A 38 -173.23 -179.83 REMARK 500 6 THR A 45 -169.72 -176.53 REMARK 500 6 GLN A 65 -43.63 71.90 REMARK 500 6 LYS A 68 53.39 -100.85 REMARK 500 6 LYS A 69 74.97 -152.72 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34216 RELATED DB: BMRB REMARK 900 PH DOMAIN FROM TGAPH DBREF1 6F8E A 11 131 UNP A0A125YY72_TOXGM DBREF2 6F8E A A0A125YY72 109 229 SEQRES 1 A 121 SER ALA SER ASP ILE ARG MET LYS LYS VAL MET GLN TYR SEQRES 2 A 121 ARG ARG ALA LEU THR LYS VAL VAL LYS LEU LYS THR HIS SEQRES 3 A 121 LEU PHE SER GLU THR VAL LYS VAL THR CYS SER LYS ASP SEQRES 4 A 121 GLY GLU GLU VAL GLN TRP PHE LYS GLY LYS SER THR ALA SEQRES 5 A 121 GLY ALA GLN ASP ARG LYS LYS PRO SER GLY GLY PHE PRO SEQRES 6 A 121 VAL ASP LYS ILE THR SER VAL LYS SER GLN ALA ASP ASN SEQRES 7 A 121 THR LYS VAL LEU VAL ILE THR VAL ASN ASN PRO GLN PRO SEQRES 8 A 121 THR THR TYR ASN PHE THR PHE LYS SER PRO GLY GLU ARG SEQRES 9 A 121 GLU SER TRP GLN GLU GLN ILE GLN SER LEU MET LYS PHE SEQRES 10 A 121 MET SER MET LYS HELIX 1 AA1 SER A 11 THR A 28 1 18 HELIX 2 AA2 GLY A 112 MET A 130 1 19 SHEET 1 AA1 5 GLY A 73 PRO A 75 0 SHEET 2 AA1 5 GLU A 52 LYS A 57 -1 N VAL A 53 O PHE A 74 SHEET 3 AA1 5 SER A 39 CYS A 46 -1 N LYS A 43 O PHE A 56 SHEET 4 AA1 5 LYS A 29 LYS A 34 -1 N VAL A 31 O VAL A 42 SHEET 5 AA1 5 PHE A 106 THR A 107 -1 O THR A 107 N LYS A 32 SHEET 1 AA2 3 ILE A 79 SER A 84 0 SHEET 2 AA2 3 LEU A 92 VAL A 96 -1 O THR A 95 N SER A 81 SHEET 3 AA2 3 THR A 102 TYR A 104 -1 O TYR A 104 N ILE A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MASTER 158 0 0 2 8 0 0 6 963 1 0 10 END