HEADER DNA BINDING PROTEIN 18-DEC-17 6FB8 TITLE CRYSTAL STRUCTURE OF THE I-CREI HOMING ENDONUCLEASE D75N VARIANT IN TITLE 2 COMPLEX WITH AN ALTERED VERSION OF ITS TARGET DNA AT 5NNN REGION IN TITLE 3 THE PRESENCE OF MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*CP*GP*CP*AP*GP*TP*TP*TP*TP* COMPND 4 GP*A)-3'); COMPND 5 CHAIN: D; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*CP*AP*AP*AP*AP*CP*TP*GP*CP*GP*TP*AP*CP*GP*AP*CP*GP*TP*TP*TP*TP* COMPND 10 GP*A)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 15 CHAIN: A, B; COMPND 16 SYNONYM: 23S RRNA INTRON PROTEIN; COMPND 17 EC: 3.1.-.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 11 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 12 ORGANISM_TAXID: 3055; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHLAMYDOMONAS REINHARDTII, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,J.PRIETO REVDAT 2 17-JAN-24 6FB8 1 LINK REVDAT 1 18-JUL-18 6FB8 0 JRNL AUTH J.PRIETO,P.REDONDO,B.LOPEZ-MENDEZ,M.D'ABRAMO,N.MERINO, JRNL AUTH 2 F.J.BLANCO,P.DUCHATEAU,G.MONTOYA,R.MOLINA JRNL TITL UNDERSTANDING THE INDIRECT DNA READ-OUT SPECIFICITY OF JRNL TITL 2 I-CREI MEGANUCLEASE. JRNL REF SCI REP V. 8 10286 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29980759 JRNL DOI 10.1038/S41598-018-28599-0 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 56079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4258 - 7.3928 0.99 1858 139 0.1277 0.1229 REMARK 3 2 7.3928 - 5.8870 0.98 1833 141 0.1558 0.1639 REMARK 3 3 5.8870 - 5.1484 1.00 1889 138 0.1470 0.2121 REMARK 3 4 5.1484 - 4.6802 1.00 1828 133 0.1572 0.1839 REMARK 3 5 4.6802 - 4.3462 0.99 1900 139 0.1461 0.1907 REMARK 3 6 4.3462 - 4.0908 0.99 1873 147 0.1615 0.2087 REMARK 3 7 4.0908 - 3.8865 0.96 1780 128 0.1692 0.2065 REMARK 3 8 3.8865 - 3.7178 0.99 1864 140 0.1833 0.2441 REMARK 3 9 3.7178 - 3.5750 1.00 1882 142 0.1922 0.2555 REMARK 3 10 3.5750 - 3.4518 1.00 1845 137 0.1986 0.2415 REMARK 3 11 3.4518 - 3.3441 1.00 1905 142 0.1933 0.2633 REMARK 3 12 3.3441 - 3.2487 1.00 1874 144 0.1854 0.2065 REMARK 3 13 3.2487 - 3.1633 1.00 1831 136 0.2147 0.2311 REMARK 3 14 3.1633 - 3.0862 1.00 1908 144 0.2351 0.2645 REMARK 3 15 3.0862 - 3.0161 1.00 1852 141 0.2339 0.3094 REMARK 3 16 3.0161 - 2.9520 0.99 1876 135 0.2264 0.2589 REMARK 3 17 2.9520 - 2.8930 0.99 1861 139 0.2391 0.2136 REMARK 3 18 2.8930 - 2.8385 0.99 1819 133 0.2639 0.3061 REMARK 3 19 2.8385 - 2.7879 0.99 1914 152 0.2684 0.3536 REMARK 3 20 2.7879 - 2.7406 0.98 1787 124 0.2906 0.3807 REMARK 3 21 2.7406 - 2.6965 0.99 1922 135 0.2984 0.3400 REMARK 3 22 2.6965 - 2.6550 1.00 1795 132 0.2618 0.3211 REMARK 3 23 2.6550 - 2.6160 1.00 1934 142 0.2614 0.3335 REMARK 3 24 2.6160 - 2.5792 1.00 1896 140 0.2693 0.3708 REMARK 3 25 2.5792 - 2.5444 1.00 1829 134 0.2838 0.3567 REMARK 3 26 2.5444 - 2.5113 1.00 1882 142 0.2824 0.3078 REMARK 3 27 2.5113 - 2.4800 0.99 1844 135 0.3005 0.2917 REMARK 3 28 2.4800 - 2.4501 0.99 1914 150 0.3127 0.3991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3654 REMARK 3 ANGLE : 1.227 5138 REMARK 3 CHIRALITY : 0.045 588 REMARK 3 PLANARITY : 0.006 481 REMARK 3 DIHEDRAL : 22.551 1434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 27.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1G9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6-5.4, 33-40% (V/V) 1,2-PROPANEDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.88000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.32000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 355 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 302 O HOH A 327 2.03 REMARK 500 OD1 ASP B 220 O HOH B 501 2.12 REMARK 500 OD1 ASP A 20 O HOH B 501 2.12 REMARK 500 N6 DA D 624 O4 DT C 501 2.14 REMARK 500 OP2 DG C 515 O HOH B 501 2.16 REMARK 500 O HOH A 325 O HOH B 524 2.17 REMARK 500 O6 DG C 509 NH1 ARG A 70 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 610 O3' DC D 610 C3' -0.042 REMARK 500 DG D 615 O3' DG D 615 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 614 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC D 616 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 514 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG C 515 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 DA C 516 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 109.30 -59.29 REMARK 500 ARG A 52 -35.37 -33.65 REMARK 500 ARG A 70 58.88 -114.13 REMARK 500 LYS A 142 -57.86 -127.45 REMARK 500 ALA A 154 72.50 -64.63 REMARK 500 PRO B 229 104.34 -55.08 REMARK 500 LYS B 248 129.87 -37.40 REMARK 500 ARG B 270 85.58 -150.29 REMARK 500 LYS B 339 -33.84 -135.20 REMARK 500 LYS B 342 -48.63 -131.18 REMARK 500 ASP B 353 63.93 -66.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC D 614 OP1 REMARK 620 2 DG C 515 OP2 104.8 REMARK 620 3 HOH C 607 O 86.0 74.8 REMARK 620 4 ASP A 20 OD1 102.9 70.9 145.8 REMARK 620 5 ASP A 20 OD2 88.2 120.3 164.8 49.4 REMARK 620 6 GLY B 219 O 174.3 77.6 89.7 82.7 95.0 REMARK 620 7 HOH B 511 O 83.3 153.0 80.2 133.3 85.2 92.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG D 615 OP2 REMARK 620 2 HOH D 816 O 77.9 REMARK 620 3 DC C 514 OP1 105.2 87.7 REMARK 620 4 GLY A 19 O 79.5 100.5 171.4 REMARK 620 5 HOH A 311 O 160.7 84.6 81.9 95.9 REMARK 620 6 ASP B 220 OD2 116.6 164.9 84.6 86.8 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 134 O REMARK 620 2 ASN A 136 O 78.0 REMARK 620 3 HOH A 301 O 75.2 56.9 REMARK 620 4 HOH A 304 O 105.3 67.0 122.7 REMARK 620 5 HOH A 322 O 79.7 127.2 152.9 73.8 REMARK 620 6 HOH A 326 O 154.2 84.7 79.3 85.0 126.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 325 O REMARK 620 2 ALA B 334 O 161.2 REMARK 620 3 ASN B 336 O 99.0 75.3 REMARK 620 4 HOH B 505 O 120.4 72.9 60.7 REMARK 620 5 HOH B 517 O 62.7 98.6 71.5 132.1 REMARK 620 6 HOH B 524 O 52.0 140.2 77.7 68.6 99.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 DBREF 6FB8 D 601 624 PDB 6FB8 6FB8 601 624 DBREF 6FB8 C 501 524 PDB 6FB8 6FB8 501 524 DBREF 6FB8 A 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 6FB8 B 202 353 UNP P05725 DNE1_CHLRE 2 153 SEQADV 6FB8 ASN A 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQADV 6FB8 ALA A 154 UNP P05725 EXPRESSION TAG SEQADV 6FB8 ALA A 155 UNP P05725 EXPRESSION TAG SEQADV 6FB8 ASN B 275 UNP P05725 ASP 75 ENGINEERED MUTATION SEQADV 6FB8 ALA B 354 UNP P05725 EXPRESSION TAG SEQADV 6FB8 ALA B 355 UNP P05725 EXPRESSION TAG SEQRES 1 D 24 DT DC DA DA DA DA DC DG DT DC DG DT DA SEQRES 2 D 24 DC DG DC DA DG DT DT DT DT DG DA SEQRES 1 C 24 DT DC DA DA DA DA DC DT DG DC DG DT DA SEQRES 2 C 24 DC DG DA DC DG DT DT DT DT DG DA SEQRES 1 A 154 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 154 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 154 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 A 154 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 154 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 154 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 A 154 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 154 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 154 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 A 154 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 154 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 A 154 SER GLU THR VAL ARG ALA VAL LEU ASP ALA ALA SEQRES 1 B 154 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 154 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 154 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 B 154 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 154 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 154 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 B 154 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 154 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 154 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 B 154 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 154 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 B 154 SER GLU THR VAL ARG ALA VAL LEU ASP ALA ALA HET MG D 701 1 HET MG D 702 1 HET PGO A 201 5 HET PGO A 202 5 HET MG A 203 1 HET PGO B 401 5 HET PGO B 402 5 HET MG B 403 1 HETNAM MG MAGNESIUM ION HETNAM PGO S-1,2-PROPANEDIOL FORMUL 5 MG 4(MG 2+) FORMUL 7 PGO 4(C3 H8 O2) FORMUL 13 HOH *86(H2 O) HELIX 1 AA1 ASN A 6 ASP A 20 1 15 HELIX 2 AA2 ARG A 51 GLY A 63 1 13 HELIX 3 AA3 GLU A 80 GLN A 92 1 13 HELIX 4 AA4 PRO A 93 LEU A 95 5 3 HELIX 5 AA5 LYS A 98 GLN A 111 1 14 HELIX 6 AA6 GLN A 111 SER A 118 1 8 HELIX 7 AA7 SER A 118 ASN A 136 1 19 HELIX 8 AA8 VAL A 148 ASP A 153 1 6 HELIX 9 AA9 ASN B 206 ASP B 220 1 15 HELIX 10 AB1 ARG B 251 GLY B 263 1 13 HELIX 11 AB2 GLU B 280 GLN B 292 1 13 HELIX 12 AB3 PRO B 293 LEU B 295 5 3 HELIX 13 AB4 LYS B 298 GLN B 311 1 14 HELIX 14 AB5 GLN B 311 LYS B 316 1 6 HELIX 15 AB6 SER B 318 ASN B 336 1 19 HELIX 16 AB7 SER B 345 ASP B 353 1 9 SHEET 1 AA1 4 GLY A 21 PRO A 29 0 SHEET 2 AA1 4 HIS A 37 LYS A 48 -1 O THR A 42 N ILE A 24 SHEET 3 AA1 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA1 4 TYR A 66 ASP A 69 -1 N TYR A 66 O ILE A 77 SHEET 1 AA2 4 GLY B 221 PRO B 229 0 SHEET 2 AA2 4 HIS B 237 LYS B 248 -1 O SER B 240 N GLN B 226 SHEET 3 AA2 4 VAL B 273 LEU B 278 -1 O SER B 274 N GLN B 247 SHEET 4 AA2 4 TYR B 266 ARG B 270 -1 N ARG B 268 O ASN B 275 LINK OP1 DC D 614 MG MG D 701 1555 1555 2.19 LINK OP2 DG D 615 MG MG D 702 1555 1555 2.23 LINK MG MG D 701 OP2 DG C 515 1555 1555 2.33 LINK MG MG D 701 O HOH C 607 1555 1555 2.03 LINK MG MG D 701 OD1 ASP A 20 1555 1555 2.85 LINK MG MG D 701 OD2 ASP A 20 1555 1555 2.15 LINK MG MG D 701 O GLY B 219 1555 1555 2.16 LINK MG MG D 701 O HOH B 511 1555 1555 2.31 LINK MG MG D 702 O HOH D 816 1555 1555 2.39 LINK MG MG D 702 OP1 DC C 514 1555 1555 2.15 LINK MG MG D 702 O GLY A 19 1555 1555 2.29 LINK MG MG D 702 O HOH A 311 1555 1555 2.33 LINK MG MG D 702 OD2 ASP B 220 1555 1555 2.22 LINK O ALA A 134 MG MG A 203 1555 1555 2.30 LINK O ASN A 136 MG MG A 203 1555 1555 2.65 LINK MG MG A 203 O HOH A 301 1555 1555 2.33 LINK MG MG A 203 O HOH A 304 1555 1555 2.61 LINK MG MG A 203 O HOH A 322 1555 1555 2.47 LINK MG MG A 203 O HOH A 326 1555 1555 1.97 LINK O HOH A 325 MG MG B 403 1555 1555 2.44 LINK O ALA B 334 MG MG B 403 1555 1555 2.44 LINK O ASN B 336 MG MG B 403 1555 1555 2.70 LINK MG MG B 403 O HOH B 505 1555 1555 2.40 LINK MG MG B 403 O HOH B 517 1555 1555 2.68 LINK MG MG B 403 O HOH B 524 1555 1555 2.52 SITE 1 AC1 6 ASP A 20 GLY B 219 HOH B 511 DG C 515 SITE 2 AC1 6 HOH C 607 DC D 614 SITE 1 AC2 6 GLY A 19 HOH A 311 ASP B 220 DC C 514 SITE 2 AC2 6 DG D 615 HOH D 816 SITE 1 AC3 4 PHE A 54 LEU A 58 GLU A 61 LYS B 296 SITE 1 AC4 7 LEU A 97 LYS A 98 GLN A 101 LEU A 135 SITE 2 AC4 7 ARG B 251 DC D 616 HOH D 816 SITE 1 AC5 6 ALA A 134 ASN A 136 HOH A 301 HOH A 304 SITE 2 AC5 6 HOH A 322 HOH A 326 SITE 1 AC6 6 LYS A 96 PHE B 209 PHE B 254 LYS B 257 SITE 2 AC6 6 LEU B 258 GLU B 261 SITE 1 AC7 5 LEU B 297 LYS B 298 GLN B 301 DA C 516 SITE 2 AC7 5 HOH C 607 SITE 1 AC8 6 HOH A 325 ALA B 334 ASN B 336 HOH B 505 SITE 2 AC8 6 HOH B 517 HOH B 524 CRYST1 79.480 79.480 125.760 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012582 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007952 0.00000