HEADER TRANSFERASE 20-DEC-17 6FCI TITLE CRYSTAL STRUCTURE OF HUMAN APRT WILD TYPE IN COMPLEX WITH ADENINE, TITLE 2 PRPP AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: APRT; COMPND 5 EC: 2.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APRT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS ROSSMAN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.NIOCHE,J.HUYET,M.OZEIR REVDAT 3 17-JAN-24 6FCI 1 HETSYN REVDAT 2 29-JUL-20 6FCI 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 15-AUG-18 6FCI 0 JRNL AUTH J.HUYET,M.OZEIR,M.C.BURGEVIN,B.PINSON,F.CHESNEY,J.M.REMY, JRNL AUTH 2 A.R.SIDDIQI,R.LUPOLI,G.PINON,C.SAINT-MARC,J.F.GIBERT, JRNL AUTH 3 R.MORALES,I.CEBALLOS-PICOT,R.BAROUKI,B.DAIGNAN-FORNIER, JRNL AUTH 4 A.OLIVIER-BANDINI,F.AUGE,P.NIOCHE JRNL TITL STRUCTURAL INSIGHTS INTO THE FORWARD AND REVERSE ENZYMATIC JRNL TITL 2 REACTIONS IN HUMAN ADENINE PHOSPHORIBOSYLTRANSFERASE. JRNL REF CELL CHEM BIOL V. 25 666 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29576532 JRNL DOI 10.1016/J.CHEMBIOL.2018.02.011 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 42796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : -0.10000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5904 ; 0.003 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5845 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8036 ; 0.873 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13498 ; 0.535 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 742 ; 6.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;30.007 ;23.115 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1042 ;13.726 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;19.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 926 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6455 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1279 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2878 ; 0.732 ; 0.904 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2877 ; 0.731 ; 0.903 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3599 ; 1.157 ; 1.347 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0590 11.6616 -1.6492 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0123 REMARK 3 T33: 0.0127 T12: -0.0105 REMARK 3 T13: -0.0077 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4252 L22: 1.0243 REMARK 3 L33: 1.0375 L12: 0.0790 REMARK 3 L13: 0.0715 L23: -0.1043 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.0034 S13: 0.0548 REMARK 3 S21: -0.0152 S22: 0.0288 S23: -0.0057 REMARK 3 S31: -0.1000 S32: 0.0531 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2106 37.6055 -29.7886 REMARK 3 T TENSOR REMARK 3 T11: 0.0301 T22: 0.0011 REMARK 3 T33: 0.0206 T12: -0.0045 REMARK 3 T13: -0.0066 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.8848 L22: 1.6878 REMARK 3 L33: 0.7647 L12: -0.1871 REMARK 3 L13: 0.0549 L23: 0.3786 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0104 S13: 0.0871 REMARK 3 S21: 0.0337 S22: 0.0196 S23: -0.0760 REMARK 3 S31: -0.1143 S32: 0.0258 S33: -0.0221 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 180 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2946 17.7984 -37.1243 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: 0.0162 REMARK 3 T33: 0.0171 T12: -0.0127 REMARK 3 T13: -0.0082 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.3924 L22: 1.0052 REMARK 3 L33: 1.1553 L12: 0.1494 REMARK 3 L13: -0.1438 L23: 0.1044 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.0120 S13: -0.0594 REMARK 3 S21: -0.0550 S22: 0.0239 S23: 0.0201 REMARK 3 S31: 0.0695 S32: -0.0298 S33: -0.0189 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 180 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0005 -8.3941 4.3315 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0031 REMARK 3 T33: 0.0230 T12: -0.0024 REMARK 3 T13: -0.0052 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.9443 L22: 1.6284 REMARK 3 L33: 0.7251 L12: -0.1631 REMARK 3 L13: 0.1278 L23: -0.4725 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.0042 S13: -0.0810 REMARK 3 S21: 0.0431 S22: 0.0221 S23: 0.0698 REMARK 3 S31: 0.1097 S32: -0.0236 S33: -0.0239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 71.351 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.16800 REMARK 200 R SYM FOR SHELL (I) : 0.16800 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAOAC, PEG4000, GLYCEROL, TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ALA D 2 REMARK 465 ASP D 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 305 O HOH D 375 2.10 REMARK 500 O HOH D 317 O HOH D 372 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 131 -97.87 -117.29 REMARK 500 LEU B 103 -169.28 -113.80 REMARK 500 ALA B 131 -97.54 -109.31 REMARK 500 ALA C 131 -98.94 -113.18 REMARK 500 ALA D 131 -99.40 -110.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP A 201 O1 REMARK 620 2 PRP A 201 O3 83.9 REMARK 620 3 PRP A 201 O3B 94.5 173.0 REMARK 620 4 PRP A 201 O2 74.1 75.3 97.8 REMARK 620 5 HOH A 307 O 87.4 88.8 97.9 156.6 REMARK 620 6 HOH A 315 O 176.2 92.4 89.3 105.6 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP B 201 O1 REMARK 620 2 PRP B 201 O2 73.2 REMARK 620 3 PRP B 201 O3 83.4 77.2 REMARK 620 4 PRP B 201 O3B 91.2 98.5 173.8 REMARK 620 5 HOH B 304 O 82.9 153.1 88.2 94.0 REMARK 620 6 HOH B 307 O 172.0 107.2 88.9 96.7 94.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP C 201 O3 REMARK 620 2 PRP C 201 O1 88.2 REMARK 620 3 PRP C 201 O2 78.6 77.6 REMARK 620 4 PRP C 201 O3B 177.1 94.2 100.3 REMARK 620 5 HOH C 304 O 88.6 89.9 162.3 93.0 REMARK 620 6 HOH C 310 O 88.5 176.7 101.8 89.2 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP D 201 O1 REMARK 620 2 PRP D 201 O2 75.6 REMARK 620 3 PRP D 201 O3 86.7 78.1 REMARK 620 4 PRP D 201 O3B 90.0 93.8 171.8 REMARK 620 5 HOH D 311 O 175.3 101.7 89.0 94.0 REMARK 620 6 HOH D 339 O 84.6 158.1 91.9 95.3 97.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FCH RELATED DB: PDB REMARK 900 RELATED ID: 6FCL RELATED DB: PDB REMARK 900 RELATED ID: 6FD4 RELATED DB: PDB REMARK 900 RELATED ID: 6FD5 RELATED DB: PDB REMARK 900 RELATED ID: 6FD6 RELATED DB: PDB DBREF 6FCI A 2 180 UNP P07741 APT_HUMAN 2 180 DBREF 6FCI B 2 180 UNP P07741 APT_HUMAN 2 180 DBREF 6FCI C 2 180 UNP P07741 APT_HUMAN 2 180 DBREF 6FCI D 2 180 UNP P07741 APT_HUMAN 2 180 SEQRES 1 A 179 ALA ASP SER GLU LEU GLN LEU VAL GLU GLN ARG ILE ARG SEQRES 2 A 179 SER PHE PRO ASP PHE PRO THR PRO GLY VAL VAL PHE ARG SEQRES 3 A 179 ASP ILE SER PRO VAL LEU LYS ASP PRO ALA SER PHE ARG SEQRES 4 A 179 ALA ALA ILE GLY LEU LEU ALA ARG HIS LEU LYS ALA THR SEQRES 5 A 179 HIS GLY GLY ARG ILE ASP TYR ILE ALA GLY LEU ASP SER SEQRES 6 A 179 ARG GLY PHE LEU PHE GLY PRO SER LEU ALA GLN GLU LEU SEQRES 7 A 179 GLY LEU GLY CYS VAL LEU ILE ARG LYS ARG GLY LYS LEU SEQRES 8 A 179 PRO GLY PRO THR LEU TRP ALA SER TYR SER LEU GLU TYR SEQRES 9 A 179 GLY LYS ALA GLU LEU GLU ILE GLN LYS ASP ALA LEU GLU SEQRES 10 A 179 PRO GLY GLN ARG VAL VAL VAL VAL ASP ASP LEU LEU ALA SEQRES 11 A 179 THR GLY GLY THR MET ASN ALA ALA CYS GLU LEU LEU GLY SEQRES 12 A 179 ARG LEU GLN ALA GLU VAL LEU GLU CYS VAL SER LEU VAL SEQRES 13 A 179 GLU LEU THR SER LEU LYS GLY ARG GLU LYS LEU ALA PRO SEQRES 14 A 179 VAL PRO PHE PHE SER LEU LEU GLN TYR GLU SEQRES 1 B 179 ALA ASP SER GLU LEU GLN LEU VAL GLU GLN ARG ILE ARG SEQRES 2 B 179 SER PHE PRO ASP PHE PRO THR PRO GLY VAL VAL PHE ARG SEQRES 3 B 179 ASP ILE SER PRO VAL LEU LYS ASP PRO ALA SER PHE ARG SEQRES 4 B 179 ALA ALA ILE GLY LEU LEU ALA ARG HIS LEU LYS ALA THR SEQRES 5 B 179 HIS GLY GLY ARG ILE ASP TYR ILE ALA GLY LEU ASP SER SEQRES 6 B 179 ARG GLY PHE LEU PHE GLY PRO SER LEU ALA GLN GLU LEU SEQRES 7 B 179 GLY LEU GLY CYS VAL LEU ILE ARG LYS ARG GLY LYS LEU SEQRES 8 B 179 PRO GLY PRO THR LEU TRP ALA SER TYR SER LEU GLU TYR SEQRES 9 B 179 GLY LYS ALA GLU LEU GLU ILE GLN LYS ASP ALA LEU GLU SEQRES 10 B 179 PRO GLY GLN ARG VAL VAL VAL VAL ASP ASP LEU LEU ALA SEQRES 11 B 179 THR GLY GLY THR MET ASN ALA ALA CYS GLU LEU LEU GLY SEQRES 12 B 179 ARG LEU GLN ALA GLU VAL LEU GLU CYS VAL SER LEU VAL SEQRES 13 B 179 GLU LEU THR SER LEU LYS GLY ARG GLU LYS LEU ALA PRO SEQRES 14 B 179 VAL PRO PHE PHE SER LEU LEU GLN TYR GLU SEQRES 1 C 179 ALA ASP SER GLU LEU GLN LEU VAL GLU GLN ARG ILE ARG SEQRES 2 C 179 SER PHE PRO ASP PHE PRO THR PRO GLY VAL VAL PHE ARG SEQRES 3 C 179 ASP ILE SER PRO VAL LEU LYS ASP PRO ALA SER PHE ARG SEQRES 4 C 179 ALA ALA ILE GLY LEU LEU ALA ARG HIS LEU LYS ALA THR SEQRES 5 C 179 HIS GLY GLY ARG ILE ASP TYR ILE ALA GLY LEU ASP SER SEQRES 6 C 179 ARG GLY PHE LEU PHE GLY PRO SER LEU ALA GLN GLU LEU SEQRES 7 C 179 GLY LEU GLY CYS VAL LEU ILE ARG LYS ARG GLY LYS LEU SEQRES 8 C 179 PRO GLY PRO THR LEU TRP ALA SER TYR SER LEU GLU TYR SEQRES 9 C 179 GLY LYS ALA GLU LEU GLU ILE GLN LYS ASP ALA LEU GLU SEQRES 10 C 179 PRO GLY GLN ARG VAL VAL VAL VAL ASP ASP LEU LEU ALA SEQRES 11 C 179 THR GLY GLY THR MET ASN ALA ALA CYS GLU LEU LEU GLY SEQRES 12 C 179 ARG LEU GLN ALA GLU VAL LEU GLU CYS VAL SER LEU VAL SEQRES 13 C 179 GLU LEU THR SER LEU LYS GLY ARG GLU LYS LEU ALA PRO SEQRES 14 C 179 VAL PRO PHE PHE SER LEU LEU GLN TYR GLU SEQRES 1 D 179 ALA ASP SER GLU LEU GLN LEU VAL GLU GLN ARG ILE ARG SEQRES 2 D 179 SER PHE PRO ASP PHE PRO THR PRO GLY VAL VAL PHE ARG SEQRES 3 D 179 ASP ILE SER PRO VAL LEU LYS ASP PRO ALA SER PHE ARG SEQRES 4 D 179 ALA ALA ILE GLY LEU LEU ALA ARG HIS LEU LYS ALA THR SEQRES 5 D 179 HIS GLY GLY ARG ILE ASP TYR ILE ALA GLY LEU ASP SER SEQRES 6 D 179 ARG GLY PHE LEU PHE GLY PRO SER LEU ALA GLN GLU LEU SEQRES 7 D 179 GLY LEU GLY CYS VAL LEU ILE ARG LYS ARG GLY LYS LEU SEQRES 8 D 179 PRO GLY PRO THR LEU TRP ALA SER TYR SER LEU GLU TYR SEQRES 9 D 179 GLY LYS ALA GLU LEU GLU ILE GLN LYS ASP ALA LEU GLU SEQRES 10 D 179 PRO GLY GLN ARG VAL VAL VAL VAL ASP ASP LEU LEU ALA SEQRES 11 D 179 THR GLY GLY THR MET ASN ALA ALA CYS GLU LEU LEU GLY SEQRES 12 D 179 ARG LEU GLN ALA GLU VAL LEU GLU CYS VAL SER LEU VAL SEQRES 13 D 179 GLU LEU THR SER LEU LYS GLY ARG GLU LYS LEU ALA PRO SEQRES 14 D 179 VAL PRO PHE PHE SER LEU LEU GLN TYR GLU HET MG A 200 1 HET PRP A 201 22 HET ADE A 202 10 HET MG B 200 1 HET PRP B 201 22 HET ADE B 202 10 HET MG C 200 1 HET PRP C 201 22 HET ADE C 202 10 HET MG D 200 1 HET PRP D 201 22 HET ADE D 202 10 HETNAM MG MAGNESIUM ION HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM ADE ADENINE HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE FORMUL 5 MG 4(MG 2+) FORMUL 6 PRP 4(C5 H13 O14 P3) FORMUL 7 ADE 4(C5 H5 N5) FORMUL 17 HOH *311(H2 O) HELIX 1 AA1 ASP A 3 GLN A 11 1 9 HELIX 2 AA2 ILE A 29 ASP A 35 1 7 HELIX 3 AA3 ASP A 35 GLY A 55 1 21 HELIX 4 AA4 SER A 66 LEU A 70 5 5 HELIX 5 AA5 PHE A 71 GLY A 80 1 10 HELIX 6 AA6 GLY A 133 LEU A 146 1 14 HELIX 7 AA7 LYS A 163 ALA A 169 1 7 HELIX 8 AA8 GLU B 5 GLN B 11 1 7 HELIX 9 AA9 ILE B 29 ASP B 35 1 7 HELIX 10 AB1 ASP B 35 GLY B 55 1 21 HELIX 11 AB2 SER B 66 LEU B 70 5 5 HELIX 12 AB3 PHE B 71 LEU B 79 1 9 HELIX 13 AB4 GLY B 133 LEU B 146 1 14 HELIX 14 AB5 LYS B 163 ALA B 169 1 7 HELIX 15 AB6 ASP C 3 GLN C 11 1 9 HELIX 16 AB7 ILE C 29 ASP C 35 1 7 HELIX 17 AB8 ASP C 35 GLY C 55 1 21 HELIX 18 AB9 SER C 66 LEU C 70 5 5 HELIX 19 AC1 PHE C 71 LEU C 79 1 9 HELIX 20 AC2 GLY C 133 LEU C 146 1 14 HELIX 21 AC3 LYS C 163 ALA C 169 1 7 HELIX 22 AC4 GLU D 5 GLN D 11 1 7 HELIX 23 AC5 ILE D 29 ASP D 35 1 7 HELIX 24 AC6 ASP D 35 GLY D 55 1 21 HELIX 25 AC7 SER D 66 LEU D 70 5 5 HELIX 26 AC8 PHE D 71 GLY D 80 1 10 HELIX 27 AC9 GLY D 133 LEU D 146 1 14 HELIX 28 AD1 LYS D 163 ALA D 169 1 7 SHEET 1 AA1 2 ARG A 14 PRO A 17 0 SHEET 2 AA1 2 VAL A 25 ASP A 28 -1 O ASP A 28 N ARG A 14 SHEET 1 AA2 7 THR A 96 LEU A 103 0 SHEET 2 AA2 7 GLY A 106 GLN A 113 -1 O GLY A 106 N LEU A 103 SHEET 3 AA2 7 GLY A 82 LYS A 88 -1 N ARG A 87 O GLU A 111 SHEET 4 AA2 7 TYR A 60 LEU A 64 1 N ILE A 61 O VAL A 84 SHEET 5 AA2 7 ARG A 122 LEU A 130 1 O VAL A 126 N ALA A 62 SHEET 6 AA2 7 GLU A 149 LEU A 159 1 O VAL A 154 N VAL A 125 SHEET 7 AA2 7 PHE A 173 TYR A 179 1 O TYR A 179 N GLU A 158 SHEET 1 AA3 2 ARG B 14 PRO B 17 0 SHEET 2 AA3 2 VAL B 25 ASP B 28 -1 O ASP B 28 N ARG B 14 SHEET 1 AA4 7 THR B 96 LEU B 103 0 SHEET 2 AA4 7 GLY B 106 GLN B 113 -1 O ILE B 112 N LEU B 97 SHEET 3 AA4 7 GLY B 82 LYS B 88 -1 N ARG B 87 O GLU B 111 SHEET 4 AA4 7 TYR B 60 LEU B 64 1 N ILE B 61 O VAL B 84 SHEET 5 AA4 7 ARG B 122 LEU B 130 1 O VAL B 126 N ALA B 62 SHEET 6 AA4 7 GLU B 149 LEU B 159 1 O GLU B 149 N VAL B 123 SHEET 7 AA4 7 PHE B 173 TYR B 179 1 O TYR B 179 N GLU B 158 SHEET 1 AA5 2 ARG C 14 PRO C 17 0 SHEET 2 AA5 2 VAL C 25 ASP C 28 -1 O ASP C 28 N ARG C 14 SHEET 1 AA6 7 THR C 96 LEU C 103 0 SHEET 2 AA6 7 GLY C 106 GLN C 113 -1 O GLY C 106 N LEU C 103 SHEET 3 AA6 7 GLY C 82 LYS C 88 -1 N ARG C 87 O GLU C 111 SHEET 4 AA6 7 TYR C 60 LEU C 64 1 N ILE C 61 O VAL C 84 SHEET 5 AA6 7 ARG C 122 LEU C 130 1 O VAL C 126 N ALA C 62 SHEET 6 AA6 7 GLU C 149 LEU C 159 1 O VAL C 154 N VAL C 125 SHEET 7 AA6 7 PHE C 173 TYR C 179 1 O TYR C 179 N GLU C 158 SHEET 1 AA7 2 ARG D 14 PRO D 17 0 SHEET 2 AA7 2 VAL D 25 ASP D 28 -1 O ASP D 28 N ARG D 14 SHEET 1 AA8 7 THR D 96 LEU D 103 0 SHEET 2 AA8 7 GLY D 106 GLN D 113 -1 O GLY D 106 N LEU D 103 SHEET 3 AA8 7 GLY D 82 LYS D 88 -1 N ARG D 87 O GLU D 111 SHEET 4 AA8 7 TYR D 60 LEU D 64 1 N ILE D 61 O VAL D 84 SHEET 5 AA8 7 ARG D 122 LEU D 130 1 O VAL D 126 N ALA D 62 SHEET 6 AA8 7 GLU D 149 LEU D 159 1 O GLU D 149 N VAL D 123 SHEET 7 AA8 7 PHE D 173 TYR D 179 1 O TYR D 179 N GLU D 158 LINK MG MG A 200 O1 PRP A 201 1555 1555 2.23 LINK MG MG A 200 O3 PRP A 201 1555 1555 2.26 LINK MG MG A 200 O3B PRP A 201 1555 1555 2.04 LINK MG MG A 200 O2 PRP A 201 1555 1555 2.10 LINK MG MG A 200 O HOH A 307 1555 1555 2.10 LINK MG MG A 200 O HOH A 315 1555 1555 2.09 LINK MG MG B 200 O1 PRP B 201 1555 1555 2.28 LINK MG MG B 200 O2 PRP B 201 1555 1555 2.08 LINK MG MG B 200 O3 PRP B 201 1555 1555 2.22 LINK MG MG B 200 O3B PRP B 201 1555 1555 1.96 LINK MG MG B 200 O HOH B 304 1555 1555 2.18 LINK MG MG B 200 O HOH B 307 1555 1555 2.12 LINK MG MG C 200 O3 PRP C 201 1555 1555 2.19 LINK MG MG C 200 O1 PRP C 201 1555 1555 2.14 LINK MG MG C 200 O2 PRP C 201 1555 1555 2.00 LINK MG MG C 200 O3B PRP C 201 1555 1555 2.05 LINK MG MG C 200 O HOH C 304 1555 1555 2.25 LINK MG MG C 200 O HOH C 310 1555 1555 2.13 LINK MG MG D 200 O1 PRP D 201 1555 1555 2.20 LINK MG MG D 200 O2 PRP D 201 1555 1555 1.97 LINK MG MG D 200 O3 PRP D 201 1555 1555 2.23 LINK MG MG D 200 O3B PRP D 201 1555 1555 2.00 LINK MG MG D 200 O HOH D 311 1555 1555 2.00 LINK MG MG D 200 O HOH D 339 1555 1555 1.99 CISPEP 1 PHE A 19 PRO A 20 0 4.50 CISPEP 2 ASP A 65 SER A 66 0 -0.45 CISPEP 3 ASP A 65 SER A 66 0 -0.43 CISPEP 4 ALA A 169 PRO A 170 0 8.50 CISPEP 5 PHE B 19 PRO B 20 0 4.93 CISPEP 6 ASP B 65 SER B 66 0 4.02 CISPEP 7 ASP B 65 SER B 66 0 4.01 CISPEP 8 ALA B 169 PRO B 170 0 17.59 CISPEP 9 PHE C 19 PRO C 20 0 7.82 CISPEP 10 ASP C 65 SER C 66 0 5.29 CISPEP 11 ASP C 65 SER C 66 0 5.20 CISPEP 12 ALA C 169 PRO C 170 0 10.04 CISPEP 13 PHE D 19 PRO D 20 0 4.35 CISPEP 14 ASP D 65 SER D 66 0 -0.91 CISPEP 15 ASP D 65 SER D 66 0 -1.06 CISPEP 16 ALA D 169 PRO D 170 0 14.67 CRYST1 49.710 49.790 71.490 90.05 93.48 101.91 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020117 0.004243 0.001282 0.00000 SCALE2 0.000000 0.020526 0.000282 0.00000 SCALE3 0.000000 0.000000 0.014015 0.00000