HEADER LYASE 21-DEC-17 6FCR TITLE THE X-RAY STRUCTURE OF LYTIC TRANSGLYCOSYLASE SLT INACTIVE MUTANT TITLE 2 E503Q FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH NAG- TITLE 3 NAMTETRAPEPTIDE-NAG-ANHNAMTETRAPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE LYTIC MUREIN TRANSGLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-DGL-API-DAL; COMPND 9 CHAIN: F, G; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: SLT, AOY09_04369, PAMH19_2049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 9 ORGANISM_TAXID: 287; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYTIC TRANSGLYCOSYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.BATUECAS,T.DOMINGUEZ-GIL,J.A.HERMOSO REVDAT 6 17-JAN-24 6FCR 1 REMARK REVDAT 5 15-NOV-23 6FCR 1 LINK ATOM REVDAT 4 30-MAR-22 6FCR 1 HETSYN LINK REVDAT 3 29-JUL-20 6FCR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 02-MAY-18 6FCR 1 JRNL REVDAT 1 18-APR-18 6FCR 0 JRNL AUTH M.LEE,M.T.BATUECAS,S.TOMOSHIGE,T.DOMINGUEZ-GIL, JRNL AUTH 2 K.V.MAHASENAN,D.A.DIK,D.HESEK,C.MILLAN,I.USON,E.LASTOCHKIN, JRNL AUTH 3 J.A.HERMOSO,S.MOBASHERY JRNL TITL EXOLYTIC AND ENDOLYTIC TURNOVER OF PEPTIDOGLYCAN BY LYTIC JRNL TITL 2 TRANSGLYCOSYLASE SLT OFPSEUDOMONAS AERUGINOSA. JRNL REF PROC. NATL. ACAD. SCI. V. 115 4393 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29632171 JRNL DOI 10.1073/PNAS.1801298115 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 144.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1146 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5034 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.76000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.867 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5237 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4800 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7107 ; 1.302 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11062 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 6.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;36.098 ;22.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 846 ;16.523 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;18.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 757 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5823 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1184 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2452 ; 1.554 ; 5.783 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2450 ; 1.551 ; 5.783 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3062 ; 2.637 ; 8.671 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3063 ; 2.637 ; 8.672 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2785 ; 1.585 ; 6.004 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2786 ; 1.585 ; 6.005 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4046 ; 2.775 ; 8.917 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6073 ; 4.843 ;67.443 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6074 ; 4.843 ;67.447 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 642 REMARK 3 ORIGIN FOR THE GROUP (A): 68.2798 -12.0916 -8.0797 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.0130 REMARK 3 T33: 0.1521 T12: -0.0039 REMARK 3 T13: -0.0146 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.1426 L22: 0.5246 REMARK 3 L33: 0.1068 L12: -0.0582 REMARK 3 L13: -0.1121 L23: 0.0725 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0063 S13: -0.0030 REMARK 3 S21: -0.0235 S22: 0.0230 S23: 0.0860 REMARK 3 S31: -0.0077 S32: 0.0069 S33: -0.0207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 144.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM TRIS PH 8.5, 12% PEG 8000 AND REMARK 280 160MM CALCIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.68900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.68900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.68900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 193 O HOH A 801 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 193 CA ASN A 193 C -0.165 REMARK 500 ALA F 1 C DGL F 2 N 0.139 REMARK 500 API F 3 C DAL F 4 N 0.146 REMARK 500 DAL F 4 C DAL F 4 O 0.205 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 232 108.26 -56.40 REMARK 500 ASP A 301 57.50 -145.08 REMARK 500 GLU A 421 95.78 -69.39 REMARK 500 ARG A 434 -36.48 -38.74 REMARK 500 ASP A 437 -179.79 -68.73 REMARK 500 MET A 476 39.41 -90.53 REMARK 500 GLN A 521 65.81 32.08 REMARK 500 ARG A 591 108.24 -160.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 31 ARG A 32 -148.58 REMARK 500 LYS A 588 ASP A 589 -32.19 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6FCR A 30 642 UNP A0A069QJX4_PSEAI DBREF2 6FCR A A0A069QJX4 30 642 DBREF 6FCR F 1 4 PDB 6FCR 6FCR 1 4 DBREF 6FCR G 1 4 PDB 6FCR 6FCR 1 4 SEQADV 6FCR GLN A 503 UNP A0A069QJX GLU 503 ENGINEERED MUTATION SEQRES 1 A 613 GLN ARG ARG LEU TYR ASP GLN ALA LYS ALA ALA LEU ALA SEQRES 2 A 613 LYS GLY ASN SER ALA PRO TYR MET ALA SER ARG SER ALA SEQRES 3 A 613 LEU ARG ASP TYR PRO LEU GLU PRO TYR LEU ALA TYR ASP SEQRES 4 A 613 GLU LEU THR HIS ARG LEU LYS SER ALA SER ASN GLU GLU SEQRES 5 A 613 VAL GLU ARG PHE LEU THR GLU HIS GLY ASP LEU PRO GLN SEQRES 6 A 613 ILE GLY TRP LEU LYS LEU ARG TRP LEU ARG LEU LEU ALA SEQRES 7 A 613 ASP ARG GLY ASP TRP LYS THR PHE VAL ASN TYR TYR ASP SEQRES 8 A 613 PRO LYS LEU ASN PHE THR GLU LEU ASP CYS LEU TYR GLY SEQRES 9 A 613 GLN TYR GLN LEU GLY HIS GLY GLN LYS ALA GLU GLY TYR SEQRES 10 A 613 ALA THR SER GLU ARG LEU TRP LEU VAL GLY LYS SER GLN SEQRES 11 A 613 PRO ALA ALA CYS ASP THR LEU PHE GLY LEU TRP GLN GLY SEQRES 12 A 613 GLU GLY GLN LEU THR GLU GLU LYS VAL TRP LYS ARG LEU SEQRES 13 A 613 LYS LEU ALA ALA GLU ALA ARG ASN TYR SER LEU ALA SER SEQRES 14 A 613 HIS LEU ALA GLN ARG LEU PRO THR LEU GLY ASN GLN GLY SEQRES 15 A 613 ALA LEU MET VAL SER VAL ALA GLN ASN PRO ALA GLN LEU SEQRES 16 A 613 SER GLN THR GLY ARG PHE SER GLN ARG ASP HIS ALA THR SEQRES 17 A 613 ALA ASP VAL VAL GLY LEU GLY LEU ARG ARG LEU ALA ARG SEQRES 18 A 613 GLN ASP PRO GLU LYS ALA LEU SER LEU LEU ASP TYR TYR SEQRES 19 A 613 SER SER ALA LEU PRO PHE SER SER ASP GLU LYS VAL ALA SEQRES 20 A 613 ILE ALA ARG GLU ILE GLY LEU SER LEU ALA LYS ARG PHE SEQRES 21 A 613 ASP PRO ARG ALA LEU PRO LEU MET THR GLN TYR ASP PRO SEQRES 22 A 613 GLY LEU ARG ASP ASN THR VAL THR GLU TRP ARG THR ARG SEQRES 23 A 613 LEU LEU LEU ARG LEU GLY ARG TRP ASP GLU ALA TYR ALA SEQRES 24 A 613 LEU THR ARG LYS LEU PRO GLN ASP LEU ALA ALA THR SER SEQRES 25 A 613 ARG TRP ARG TYR TRP GLN ALA ARG SER LEU GLN LEU ALA SEQRES 26 A 613 GLN PRO ASN SER LYS GLU PRO ILE ALA LEU TYR GLN LYS SEQRES 27 A 613 LEU ALA GLY GLU ARG ASP PHE TYR GLY PHE LEU ALA ALA SEQRES 28 A 613 ASP ARG LEU SER VAL PRO TYR LYS LEU GLY ASN ARG PRO SEQRES 29 A 613 ALA HIS ILE ASP PRO ARG VAL LEU GLN ARG VAL ARG ASN SEQRES 30 A 613 ALA ALA SER THR ARG ARG ALA MET GLU PHE PHE ASN ARG SEQRES 31 A 613 GLY GLU VAL ILE ASN ALA ARG ARG GLU TRP TYR HIS ALA SEQRES 32 A 613 ALA ARG LEU PHE ASP ARG ASP GLU LEU ILE ALA GLN ALA SEQRES 33 A 613 ARG LEU ALA TYR ASP MET GLN TRP TYR PHE PRO ALA ILE SEQRES 34 A 613 ARG SER ILE SER GLN ALA GLN TYR TRP ASP ASP LEU ASP SEQRES 35 A 613 ILE ARG PHE PRO MET ALA HIS ARG ALA THR LEU VAL ARG SEQRES 36 A 613 GLU ALA LYS ASN ARG GLY LEU HIS SER SER TRP ILE PHE SEQRES 37 A 613 ALA ILE THR ARG GLN GLN SER ALA PHE MET SER ASP ALA SEQRES 38 A 613 ARG SER GLY VAL GLY ALA THR GLY LEU MET GLN LEU MET SEQRES 39 A 613 PRO GLY THR ALA LYS GLU THR SER ARG LYS PHE GLY ILE SEQRES 40 A 613 PRO LEU ALA SER THR GLN GLN LEU ILE VAL PRO ASP VAL SEQRES 41 A 613 ASN ILE ARG LEU GLY ALA ALA TYR LEU SER GLN VAL HIS SEQRES 42 A 613 SER GLN PHE ASN GLY ASN ARG VAL LEU ALA SER ALA ALA SEQRES 43 A 613 TYR ASN ALA GLY PRO GLY ARG VAL ARG GLN TRP LEU LYS SEQRES 44 A 613 ASP THR ARG HIS LEU ALA PHE ASP VAL TRP ILE GLU THR SEQRES 45 A 613 ILE PRO PHE ASP GLU THR ARG GLN TYR VAL GLN ASN VAL SEQRES 46 A 613 LEU SER TYR ALA VAL ILE TYR GLY GLN LYS LEU ASN ALA SEQRES 47 A 613 PRO GLN PRO ILE VAL ASP TRP HIS GLU ARG TYR PHE ASP SEQRES 48 A 613 ASP PHE SEQRES 1 F 4 ALA DGL API DAL SEQRES 1 G 4 ALA DGL API DAL HET DGL F 2 8 HET API F 3 12 HET DAL F 4 6 HET DGL G 2 8 HET API G 3 12 HET DAL G 4 6 HET NAG B 1 14 HET AMU B 2 18 HET NAG B 3 14 HET GOL A 701 6 HET ACT A 702 4 HET AH0 G 101 18 HETNAM DGL D-GLUTAMIC ACID HETNAM API 2,6-DIAMINOPIMELIC ACID HETNAM DAL D-ALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM AMU N-ACETYL-BETA-MURAMIC ACID HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM AH0 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT- HETNAM 2 AH0 3-YLOXY)-PROPIONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN AMU N-ACETYL-MURAMIC ACID; BETA-N-ACETYLMURAMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AH0 1,6-ANHYDRO-N-ACETYLMURAMIC ACID FORMUL 2 DGL 2(C5 H9 N O4) FORMUL 2 API 2(C7 H14 N2 O4) FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 AMU C11 H19 N O8 FORMUL 5 GOL C3 H8 O3 FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 AH0 C11 H17 N O7 FORMUL 8 HOH *126(H2 O) HELIX 1 AA1 TYR A 34 ALA A 42 1 9 HELIX 2 AA2 SER A 46 ARG A 53 1 8 HELIX 3 AA3 SER A 54 LEU A 56 5 3 HELIX 4 AA4 LEU A 61 ARG A 73 1 13 HELIX 5 AA5 LEU A 74 ALA A 77 5 4 HELIX 6 AA6 SER A 78 GLY A 90 1 13 HELIX 7 AA7 GLN A 94 ARG A 109 1 16 HELIX 8 AA8 ASP A 111 TYR A 119 1 9 HELIX 9 AA9 ASP A 120 ASN A 124 5 5 HELIX 10 AB1 PHE A 125 HIS A 139 1 15 HELIX 11 AB2 GLN A 141 LEU A 154 1 14 HELIX 12 AB3 PRO A 160 GLY A 172 1 13 HELIX 13 AB4 THR A 177 ALA A 191 1 15 HELIX 14 AB5 ASN A 193 GLN A 202 1 10 HELIX 15 AB6 LEU A 207 ASN A 220 1 14 HELIX 16 AB7 PRO A 221 SER A 231 5 11 HELIX 17 AB8 ASP A 234 ASP A 252 1 19 HELIX 18 AB9 ASP A 252 LEU A 267 1 16 HELIX 19 AC1 SER A 270 LYS A 287 1 18 HELIX 20 AC2 ARG A 288 PHE A 289 5 2 HELIX 21 AC3 ASP A 290 PRO A 291 5 2 HELIX 22 AC4 ARG A 292 ASP A 301 1 10 HELIX 23 AC5 ASP A 306 LEU A 320 1 15 HELIX 24 AC6 ARG A 322 LYS A 332 1 11 HELIX 25 AC7 PRO A 334 ALA A 339 1 6 HELIX 26 AC8 THR A 340 GLN A 355 1 16 HELIX 27 AC9 LYS A 359 ALA A 369 1 11 HELIX 28 AD1 ASP A 373 SER A 384 1 12 HELIX 29 AD2 ASP A 397 ASN A 406 1 10 HELIX 30 AD3 ALA A 407 GLY A 420 1 14 HELIX 31 AD4 GLU A 421 ARG A 434 1 14 HELIX 32 AD5 ASP A 437 MET A 451 1 15 HELIX 33 AD6 TRP A 453 GLN A 465 1 13 HELIX 34 AD7 ASP A 469 PHE A 474 1 6 HELIX 35 AD8 HIS A 478 ARG A 489 1 12 HELIX 36 AD9 HIS A 492 SER A 504 1 13 HELIX 37 AE1 MET A 523 GLY A 535 1 13 HELIX 38 AE2 SER A 540 ILE A 545 5 6 HELIX 39 AE3 VAL A 546 PHE A 565 1 20 HELIX 40 AE4 ASN A 568 GLY A 579 1 12 HELIX 41 AE5 GLY A 579 TRP A 586 1 8 HELIX 42 AE6 PHE A 595 THR A 601 1 7 HELIX 43 AE7 PHE A 604 LEU A 625 1 22 HELIX 44 AE8 ASP A 633 GLU A 636 5 4 SHEET 1 AA1 2 LEU A 593 ALA A 594 0 SHEET 2 AA1 2 TYR A 638 PHE A 639 -1 O PHE A 639 N LEU A 593 SSBOND 1 CYS A 130 CYS A 163 1555 1555 2.03 LINK C ALA F 1 N DGL F 2 1555 1555 1.48 LINK N ALA F 1 C10 AMU B 2 1555 1555 1.47 LINK CD DGL F 2 N API F 3 1555 1555 1.48 LINK C API F 3 N DAL F 4 1555 1555 1.48 LINK C ALA G 1 N DGL G 2 1555 1555 1.33 LINK N ALA G 1 C AH0 G 101 1555 1555 1.34 LINK CD DGL G 2 N API G 3 1555 1555 1.34 LINK C API G 3 N DAL G 4 1555 1555 1.35 LINK O4 AH0 G 101 C1 NAG B 1 1555 1555 1.41 LINK O4 NAG B 1 C1 AMU B 2 1555 1555 1.43 LINK O4 AMU B 2 C1 NAG B 3 1555 1555 1.42 CISPEP 1 ALA A 42 LYS A 43 0 9.49 CRYST1 166.703 166.703 55.378 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005999 0.003463 0.000000 0.00000 SCALE2 0.000000 0.006927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018058 0.00000