HEADER TRANSFERASE 21-DEC-17 6FD3 TITLE THIOPHOSPHORYLATED PAK3 KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-PAK,OLIGOPHRENIN-3,P21-ACTIVATED KINASE 3,PAK-3; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK3, OPHN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, THIOPHOSPHORYLATION, COMPLEX, ADP, PHOSPHORYLATED, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.SORRELL,D.WANG,F.VON DELFT,C.BOUNTRA,A.M.EDWARDS,J.M.ELKINS REVDAT 3 17-JAN-24 6FD3 1 LINK REVDAT 2 17-JUL-19 6FD3 1 JRNL REVDAT 1 03-JAN-18 6FD3 0 JRNL AUTH F.J.SORRELL,L.M.KILIAN,J.M.ELKINS JRNL TITL SOLUTION STRUCTURES AND BIOPHYSICAL ANALYSIS OF FULL-LENGTH JRNL TITL 2 GROUP A PAKS REVEAL THEY ARE MONOMERIC AND AUTO-INHIBITED JRNL TITL 3 INCIS. JRNL REF BIOCHEM.J. V. 476 1037 2019 JRNL REFN ESSN 1470-8728 JRNL PMID 30858169 JRNL DOI 10.1042/BCJ20180867 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 51629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.4474 - 4.0549 1.00 2688 155 0.1620 0.1676 REMARK 3 2 4.0549 - 3.2186 1.00 2633 134 0.1508 0.1425 REMARK 3 3 3.2186 - 2.8118 1.00 2623 148 0.1606 0.1744 REMARK 3 4 2.8118 - 2.5547 1.00 2624 132 0.1576 0.1826 REMARK 3 5 2.5547 - 2.3716 1.00 2593 134 0.1662 0.1802 REMARK 3 6 2.3716 - 2.2318 1.00 2599 138 0.1575 0.2056 REMARK 3 7 2.2318 - 2.1200 1.00 2610 133 0.1579 0.1722 REMARK 3 8 2.1200 - 2.0277 1.00 2569 176 0.1621 0.1924 REMARK 3 9 2.0277 - 1.9496 1.00 2609 122 0.1653 0.2155 REMARK 3 10 1.9496 - 1.8824 1.00 2577 156 0.1813 0.2140 REMARK 3 11 1.8824 - 1.8235 0.99 2568 147 0.2049 0.2220 REMARK 3 12 1.8235 - 1.7714 0.99 2579 145 0.2090 0.2525 REMARK 3 13 1.7714 - 1.7247 0.99 2572 120 0.2247 0.2545 REMARK 3 14 1.7247 - 1.6827 0.98 2546 133 0.2416 0.2935 REMARK 3 15 1.6827 - 1.6444 0.98 2545 117 0.2680 0.2772 REMARK 3 16 1.6444 - 1.6094 0.98 2553 141 0.2793 0.2684 REMARK 3 17 1.6094 - 1.5772 0.97 2527 125 0.3036 0.3188 REMARK 3 18 1.5772 - 1.5474 0.97 2541 125 0.3101 0.3901 REMARK 3 19 1.5474 - 1.5198 0.96 2446 146 0.3314 0.3383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2477 REMARK 3 ANGLE : 0.956 3376 REMARK 3 CHIRALITY : 0.056 387 REMARK 3 PLANARITY : 0.005 435 REMARK 3 DIHEDRAL : 10.096 2071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 260:265) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4435 84.2691 -22.4741 REMARK 3 T TENSOR REMARK 3 T11: 0.7050 T22: 0.6509 REMARK 3 T33: 0.4041 T12: -0.0996 REMARK 3 T13: -0.0729 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 7.1153 L22: 6.4831 REMARK 3 L33: 7.2445 L12: -2.2883 REMARK 3 L13: -1.6887 L23: 1.6472 REMARK 3 S TENSOR REMARK 3 S11: -0.1976 S12: 0.8004 S13: -0.3936 REMARK 3 S21: -0.8996 S22: 0.1169 S23: 0.5270 REMARK 3 S31: 1.2247 S32: -0.7664 S33: 0.1000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 266:272) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7791 91.4330 -23.4836 REMARK 3 T TENSOR REMARK 3 T11: 0.6193 T22: 0.4690 REMARK 3 T33: 0.1935 T12: 0.0483 REMARK 3 T13: -0.0078 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.9308 L22: 6.2935 REMARK 3 L33: 7.3814 L12: 0.5951 REMARK 3 L13: -1.1202 L23: -0.7311 REMARK 3 S TENSOR REMARK 3 S11: 0.1204 S12: 0.8912 S13: 0.1235 REMARK 3 S21: -1.1295 S22: 0.1227 S23: 0.1284 REMARK 3 S31: -0.2398 S32: 0.2393 S33: -0.2762 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 273:279) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1705 96.0539 -22.1984 REMARK 3 T TENSOR REMARK 3 T11: 0.6381 T22: 0.4598 REMARK 3 T33: 0.3291 T12: 0.0669 REMARK 3 T13: 0.1304 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 8.6682 L22: 5.1249 REMARK 3 L33: 6.6177 L12: 2.4273 REMARK 3 L13: 0.8904 L23: -1.0717 REMARK 3 S TENSOR REMARK 3 S11: 0.3485 S12: 1.2587 S13: 0.0706 REMARK 3 S21: -1.0333 S22: 0.2488 S23: -0.5230 REMARK 3 S31: 0.1931 S32: 0.2775 S33: -0.5243 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 280:312) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2786 93.3144 -10.8596 REMARK 3 T TENSOR REMARK 3 T11: 0.2573 T22: 0.2324 REMARK 3 T33: 0.2617 T12: 0.0150 REMARK 3 T13: 0.1054 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.3318 L22: 3.2042 REMARK 3 L33: 1.7944 L12: 1.3436 REMARK 3 L13: 0.0090 L23: -0.0333 REMARK 3 S TENSOR REMARK 3 S11: -0.1586 S12: 0.2524 S13: -0.3091 REMARK 3 S21: -0.1089 S22: 0.0372 S23: -0.3401 REMARK 3 S31: 0.2789 S32: 0.1862 S33: 0.1164 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 313:317) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7539 83.9377 -15.5604 REMARK 3 T TENSOR REMARK 3 T11: 0.6667 T22: 0.3470 REMARK 3 T33: 0.4067 T12: 0.0034 REMARK 3 T13: 0.0762 T23: -0.1143 REMARK 3 L TENSOR REMARK 3 L11: 3.3890 L22: 4.9901 REMARK 3 L33: 8.6357 L12: -1.4553 REMARK 3 L13: 2.6526 L23: -4.2587 REMARK 3 S TENSOR REMARK 3 S11: 0.5683 S12: 0.5798 S13: -0.7295 REMARK 3 S21: -1.2900 S22: 0.2589 S23: -0.1094 REMARK 3 S31: 1.3309 S32: 0.0245 S33: -0.7377 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 318:324) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8228 83.4349 -12.9378 REMARK 3 T TENSOR REMARK 3 T11: 0.5169 T22: 0.2803 REMARK 3 T33: 0.2798 T12: -0.0229 REMARK 3 T13: 0.0090 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 4.6780 L22: 8.5549 REMARK 3 L33: 9.3849 L12: -0.1813 REMARK 3 L13: -5.4446 L23: 5.3206 REMARK 3 S TENSOR REMARK 3 S11: 0.1627 S12: 0.7035 S13: -0.9545 REMARK 3 S21: -0.3197 S22: -0.5370 S23: -0.1146 REMARK 3 S31: 0.8860 S32: -0.6854 S33: 0.2748 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 325:339) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9370 98.9828 -9.2115 REMARK 3 T TENSOR REMARK 3 T11: 0.3179 T22: 0.2974 REMARK 3 T33: 0.2385 T12: 0.0217 REMARK 3 T13: 0.0926 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.9675 L22: 6.3176 REMARK 3 L33: 6.9956 L12: 0.8408 REMARK 3 L13: 0.7375 L23: 4.4489 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: 0.3539 S13: -0.0619 REMARK 3 S21: -0.7071 S22: -0.1005 S23: -0.3407 REMARK 3 S31: 0.0842 S32: -0.2416 S33: 0.1254 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 340:354) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8621 94.9025 -14.6156 REMARK 3 T TENSOR REMARK 3 T11: 0.4395 T22: 0.2744 REMARK 3 T33: 0.2322 T12: -0.0175 REMARK 3 T13: 0.1325 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 3.4094 L22: 4.0417 REMARK 3 L33: 4.5161 L12: -1.0493 REMARK 3 L13: 0.5338 L23: 3.8695 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: 0.5986 S13: -0.2566 REMARK 3 S21: -0.5807 S22: 0.0835 S23: -0.3871 REMARK 3 S31: 0.6170 S32: -0.0338 S33: -0.0898 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 355:405) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3731 96.1556 5.4764 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.1349 REMARK 3 T33: 0.1448 T12: 0.0063 REMARK 3 T13: 0.0014 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.4171 L22: 1.8950 REMARK 3 L33: 1.2469 L12: 0.1405 REMARK 3 L13: 0.1680 L23: -0.0609 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0800 S13: -0.0177 REMARK 3 S21: 0.2055 S22: 0.0283 S23: -0.1246 REMARK 3 S31: -0.0733 S32: 0.1061 S33: -0.0292 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 406:422) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1043 96.0404 1.8103 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1572 REMARK 3 T33: 0.1738 T12: -0.0030 REMARK 3 T13: 0.0199 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 6.9859 L22: 5.4519 REMARK 3 L33: 6.2176 L12: 4.0179 REMARK 3 L13: 4.9356 L23: 4.0343 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.1049 S13: -0.0709 REMARK 3 S21: -0.0364 S22: 0.0712 S23: -0.3039 REMARK 3 S31: -0.2033 S32: 0.1280 S33: -0.0044 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 423:437) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4216 90.2449 -6.7689 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.2124 REMARK 3 T33: 0.1991 T12: -0.0052 REMARK 3 T13: -0.0209 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.3761 L22: 6.5499 REMARK 3 L33: 1.2442 L12: -3.3175 REMARK 3 L13: 0.4218 L23: 0.7391 REMARK 3 S TENSOR REMARK 3 S11: 0.1292 S12: 0.2507 S13: -0.2599 REMARK 3 S21: -0.1689 S22: -0.1037 S23: 0.5489 REMARK 3 S31: 0.0671 S32: -0.1858 S33: -0.0480 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 438:492) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1844 82.2976 7.9611 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.1526 REMARK 3 T33: 0.1687 T12: 0.0099 REMARK 3 T13: 0.0150 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.5133 L22: 2.8005 REMARK 3 L33: 0.8045 L12: 0.3775 REMARK 3 L13: 0.2689 L23: -0.2881 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.0749 S13: -0.1261 REMARK 3 S21: 0.2121 S22: 0.0140 S23: 0.0860 REMARK 3 S31: 0.0233 S32: -0.0460 S33: -0.0855 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 493:501) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9036 83.4922 22.3133 REMARK 3 T TENSOR REMARK 3 T11: 0.5482 T22: 0.3560 REMARK 3 T33: 0.2605 T12: 0.0515 REMARK 3 T13: 0.0070 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 5.7557 L22: 2.6600 REMARK 3 L33: 4.8959 L12: 0.2096 REMARK 3 L13: 4.6325 L23: 1.9355 REMARK 3 S TENSOR REMARK 3 S11: 0.2607 S12: -0.5882 S13: -0.4975 REMARK 3 S21: 1.2267 S22: 0.5118 S23: 0.2468 REMARK 3 S31: 0.3013 S32: -0.3329 S33: -0.6302 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 502:535) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2723 95.9058 16.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.2202 REMARK 3 T33: 0.1995 T12: 0.0394 REMARK 3 T13: 0.1160 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.9580 L22: 3.3236 REMARK 3 L33: 3.9930 L12: 0.4174 REMARK 3 L13: 1.2997 L23: 0.1908 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: -0.3290 S13: -0.0352 REMARK 3 S21: 0.6479 S22: -0.0051 S23: 0.3225 REMARK 3 S31: -0.0248 S32: -0.3086 S33: 0.0192 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 536:556) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2844 97.3150 12.7471 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.2280 REMARK 3 T33: 0.2126 T12: -0.0401 REMARK 3 T13: -0.0745 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 5.6219 L22: 4.9621 REMARK 3 L33: 4.2013 L12: -0.3713 REMARK 3 L13: -1.0479 L23: 0.7180 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.2128 S13: 0.0089 REMARK 3 S21: 0.2825 S22: -0.0093 S23: -0.5318 REMARK 3 S31: -0.0126 S32: 0.3926 S33: 0.0080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52114 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 54.412 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 1.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 3Q4Z (CHAIN A) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M MAGNESIUM FORMATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.41250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 54.41250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.96700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.41250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.48350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.41250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.45050 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.41250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.41250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.96700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.41250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.45050 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.41250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 14.48350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 557 REMARK 465 SER A 558 REMARK 465 ARG A 559 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 260 OG REMARK 470 LYS A 280 NZ REMARK 470 LYS A 281 CE NZ REMARK 470 GLN A 318 CD OE1 NE2 REMARK 470 GLN A 431 CD OE1 NE2 REMARK 470 ARG A 451 NE CZ NH1 NH2 REMARK 470 LYS A 526 CD CE NZ REMARK 470 GLU A 552 CG CD OE1 OE2 REMARK 470 LYS A 555 CG CD CE NZ REMARK 470 ASN A 556 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 765 O HOH A 924 1.84 REMARK 500 O HOH A 714 O HOH A 814 1.85 REMARK 500 O HOH A 784 O HOH A 910 1.92 REMARK 500 O HOH A 898 O HOH A 906 1.92 REMARK 500 O HOH A 961 O HOH A 971 1.94 REMARK 500 O HOH A 739 O HOH A 929 1.94 REMARK 500 O HOH A 924 O HOH A 939 1.98 REMARK 500 NH1 ARG A 271 O HOH A 701 2.03 REMARK 500 O HOH A 896 O HOH A 967 2.05 REMARK 500 O HOH A 827 O HOH A 937 2.06 REMARK 500 O HOH A 833 O HOH A 920 2.11 REMARK 500 OE2 GLU A 516 O HOH A 702 2.12 REMARK 500 O HOH A 864 O HOH A 865 2.12 REMARK 500 O GLY A 493 O HOH A 703 2.14 REMARK 500 O HOH A 738 O HOH A 869 2.14 REMARK 500 O HOH A 830 O HOH A 836 2.16 REMARK 500 OD2 ASP A 406 O HOH A 704 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 909 O HOH A 943 3655 1.92 REMARK 500 O HOH A 951 O HOH A 951 6575 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 318 46.12 -97.65 REMARK 500 ASP A 402 44.72 -141.05 REMARK 500 ASP A 420 77.07 64.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 407 OD1 REMARK 620 2 ASP A 420 OD2 89.6 REMARK 620 3 ADP A 603 O2B 174.0 89.1 REMARK 620 4 ADP A 603 O2A 86.5 94.8 87.8 REMARK 620 5 HOH A 728 O 86.3 173.6 95.4 89.9 REMARK 620 6 HOH A 853 O 95.6 87.6 90.2 176.7 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 420 OD1 REMARK 620 2 ASP A 420 OD2 62.9 REMARK 620 3 ADP A 603 O3B 87.6 89.4 REMARK 620 4 HOH A 722 O 97.3 159.9 93.0 REMARK 620 5 HOH A 759 O 89.6 85.5 174.9 91.6 REMARK 620 6 HOH A 851 O 158.4 95.6 91.0 104.3 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 DBREF 6FD3 A 261 559 UNP O75914 PAK3_HUMAN 261 559 SEQADV 6FD3 SER A 260 UNP O75914 EXPRESSION TAG SEQADV 6FD3 ASP A 537 UNP O75914 ALA 537 ENGINEERED MUTATION SEQRES 1 A 300 SER MET THR ASP GLU GLU ILE LEU GLU LYS LEU ARG SER SEQRES 2 A 300 ILE VAL SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG SEQRES 3 A 300 PHE GLU LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR SEQRES 4 A 300 THR ALA LEU ASP ILE ALA THR GLY GLN GLU VAL ALA ILE SEQRES 5 A 300 LYS GLN MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU SEQRES 6 A 300 ILE ILE ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN SEQRES 7 A 300 PRO ASN ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY SEQRES 8 A 300 ASP GLU LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SEQRES 9 A 300 SER LEU THR ASP VAL VAL THR GLU THR CYS MET ASP GLU SEQRES 10 A 300 GLY GLN ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA SEQRES 11 A 300 LEU ASP PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASP SEQRES 12 A 300 ILE LYS SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER SEQRES 13 A 300 VAL LYS LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR SEQRES 14 A 300 PRO GLU GLN SER LYS ARG SER T8L MET VAL GLY THR PRO SEQRES 15 A 300 TYR TRP MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR SEQRES 16 A 300 GLY PRO LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA SEQRES 17 A 300 ILE GLU MET VAL GLU GLY GLU PRO PRO TYR LEU ASN GLU SEQRES 18 A 300 ASN PRO LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY SEQRES 19 A 300 THR PRO GLU LEU GLN ASN PRO GLU ARG LEU SER ALA VAL SEQRES 20 A 300 PHE ARG ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL SEQRES 21 A 300 ASP ARG ARG GLY SER ALA LYS GLU LEU LEU GLN HIS PRO SEQRES 22 A 300 PHE LEU LYS LEU ASP LYS PRO LEU SER SER LEU THR PRO SEQRES 23 A 300 LEU ILE ILE ALA ALA LYS GLU ALA ILE LYS ASN SER SER SEQRES 24 A 300 ARG MODRES 6FD3 T8L A 436 THR MODIFIED RESIDUE HET T8L A 436 11 HET MG A 601 1 HET MG A 602 1 HET ADP A 603 27 HET EDO A 604 4 HET EDO A 605 4 HETNAM T8L THIO-PHOSOHOTHREONINE HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 T8L C4 H10 N O5 P S FORMUL 2 MG 2(MG 2+) FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *276(H2 O) HELIX 1 AA1 THR A 262 VAL A 274 1 13 HELIX 2 AA2 ASP A 278 LYS A 281 5 4 HELIX 3 AA3 GLN A 317 GLN A 319 5 3 HELIX 4 AA4 GLU A 323 ASN A 335 1 13 HELIX 5 AA5 SER A 364 THR A 372 1 9 HELIX 6 AA6 ASP A 375 ASN A 396 1 22 HELIX 7 AA7 LYS A 404 ASP A 406 5 3 HELIX 8 AA8 THR A 440 MET A 444 5 5 HELIX 9 AA9 ALA A 445 THR A 450 1 6 HELIX 10 AB1 LYS A 457 GLY A 473 1 17 HELIX 11 AB2 ASN A 481 GLY A 493 1 13 HELIX 12 AB3 ASN A 499 LEU A 503 5 5 HELIX 13 AB4 SER A 504 LEU A 515 1 12 HELIX 14 AB5 SER A 524 LEU A 529 1 6 HELIX 15 AB6 GLN A 530 ASP A 537 5 8 HELIX 16 AB7 PRO A 539 SER A 542 5 4 HELIX 17 AB8 LEU A 543 ASN A 556 1 14 SHEET 1 AA1 5 TYR A 283 GLN A 291 0 SHEET 2 AA1 5 GLY A 295 ASP A 302 -1 O VAL A 297 N ILE A 289 SHEET 3 AA1 5 GLU A 308 ASN A 315 -1 O GLN A 313 N THR A 296 SHEET 4 AA1 5 GLU A 352 GLU A 358 -1 O LEU A 353 N MET A 314 SHEET 5 AA1 5 TYR A 343 VAL A 349 -1 N ASP A 345 O VAL A 356 SHEET 1 AA2 2 VAL A 398 ILE A 399 0 SHEET 2 AA2 2 ALA A 425 GLN A 426 -1 O ALA A 425 N ILE A 399 SHEET 1 AA3 2 ILE A 408 LEU A 410 0 SHEET 2 AA3 2 VAL A 416 LEU A 418 -1 O LYS A 417 N LEU A 409 LINK C SER A 435 N T8L A 436 1555 1555 1.33 LINK C T8L A 436 N MET A 437 1555 1555 1.33 LINK OD1 ASN A 407 MG MG A 601 1555 1555 2.16 LINK OD2 ASP A 420 MG MG A 601 1555 1555 2.10 LINK OD1 ASP A 420 MG MG A 602 1555 1555 2.02 LINK OD2 ASP A 420 MG MG A 602 1555 1555 2.17 LINK MG MG A 601 O2B ADP A 603 1555 1555 2.08 LINK MG MG A 601 O2A ADP A 603 1555 1555 2.00 LINK MG MG A 601 O HOH A 728 1555 1555 2.09 LINK MG MG A 601 O HOH A 853 1555 1555 2.08 LINK MG MG A 602 O3B ADP A 603 1555 1555 2.05 LINK MG MG A 602 O HOH A 722 1555 1555 2.13 LINK MG MG A 602 O HOH A 759 1555 1555 2.19 LINK MG MG A 602 O HOH A 851 1555 1555 2.03 SITE 1 AC1 5 ASN A 407 ASP A 420 ADP A 603 HOH A 728 SITE 2 AC1 5 HOH A 853 SITE 1 AC2 5 ASP A 420 ADP A 603 HOH A 722 HOH A 759 SITE 2 AC2 5 HOH A 851 SITE 1 AC3 26 ILE A 289 GLY A 290 GLY A 292 ALA A 293 SITE 2 AC3 26 SER A 294 GLY A 295 VAL A 297 ALA A 310 SITE 3 AC3 26 LYS A 312 MET A 357 GLU A 358 LEU A 360 SITE 4 AC3 26 ASP A 406 ASN A 407 LEU A 409 ASP A 420 SITE 5 AC3 26 MG A 601 MG A 602 HOH A 706 HOH A 722 SITE 6 AC3 26 HOH A 728 HOH A 729 HOH A 803 HOH A 841 SITE 7 AC3 26 HOH A 851 HOH A 853 SITE 1 AC4 9 GLN A 291 SER A 294 GLY A 295 THR A 296 SITE 2 AC4 9 GLN A 313 MET A 314 ASN A 315 GLN A 319 SITE 3 AC4 9 HOH A 732 SITE 1 AC5 5 MET A 374 LEU A 503 HOH A 773 HOH A 786 SITE 2 AC5 5 HOH A 875 CRYST1 108.825 108.825 57.934 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017261 0.00000