HEADER HYDROLASE 22-DEC-17 6FDG TITLE NOVEL CRYSTAL STRUCTURE OF DHNA-COA THIOESTERASE FROM STAPHYLOCOCCUS TITLE 2 AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYBENZOYL-COA THIOESTERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY ACTIVE SITE COMPND 5 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: AB520_06685, ERS072840_02738; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYDROLASE, THIOESTERASE, VITAMIN K2 METABOLIC PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR A.M.MURAD,C.BETZEL,C.WRENGER REVDAT 2 14-MAR-18 6FDG 1 SOURCE REVDAT 1 21-FEB-18 6FDG 0 SPRSDE 21-FEB-18 6FDG 5LQL JRNL AUTH A.M.MURAD,M.PERBANDT,J.LINDNER,R.SCHUBERT,C.MUNDOGO, JRNL AUTH 2 H.BROGNARO,S.FALKE,C.WRENGER,C.BETZEL JRNL TITL NOVEL CRYSTAL STRUCTURE OF DHNA-COA THIOESTERASE FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 164237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8701 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 609 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.797 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5303 ; 0.032 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4916 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7173 ; 2.677 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11436 ; 1.192 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 6.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;37.521 ;24.206 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 985 ;14.935 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.757 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 764 ; 0.179 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5825 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1132 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2501 ; 2.072 ; 2.038 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2500 ; 2.057 ; 2.037 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3140 ; 2.829 ; 3.055 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3141 ; 2.828 ; 3.056 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2802 ; 4.105 ; 2.480 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2803 ; 4.106 ; 2.481 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4031 ; 5.890 ; 3.532 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5918 ; 6.594 ;24.018 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5910 ; 6.588 ;23.988 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 164237 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 75.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RECTANGLE SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES-NA PH 7.0, 1.0 M LITHIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.39150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 150 REMARK 465 GLY B 151 REMARK 465 ILE B 152 REMARK 465 ASP B 153 REMARK 465 SER B 154 REMARK 465 LEU B 155 REMARK 465 ASP D 150 REMARK 465 GLY D 151 REMARK 465 ILE D 152 REMARK 465 ASP D 153 REMARK 465 SER D 154 REMARK 465 LEU D 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP D 59 ND2 ASN D 61 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 14 CD GLU A 14 OE2 0.075 REMARK 500 GLU A 31 CD GLU A 31 OE1 0.114 REMARK 500 GLU A 31 CD GLU A 31 OE2 0.147 REMARK 500 TYR A 70 CE1 TYR A 70 CZ -0.083 REMARK 500 TYR A 125 CE1 TYR A 125 CZ -0.092 REMARK 500 TYR A 133 CZ TYR A 133 CE2 -0.078 REMARK 500 TYR B 12 CE1 TYR B 12 CZ -0.119 REMARK 500 TYR B 12 CZ TYR B 12 OH 0.106 REMARK 500 TYR C 12 CE1 TYR C 12 CZ -0.123 REMARK 500 TYR C 12 CZ TYR C 12 OH 0.113 REMARK 500 GLU C 31 CD GLU C 31 OE1 0.092 REMARK 500 GLU C 31 CD GLU C 31 OE2 0.069 REMARK 500 GLU C 31 CD GLU C 31 OE2 0.119 REMARK 500 SER C 134 CB SER C 134 OG -0.103 REMARK 500 TYR D 12 CE1 TYR D 12 CZ -0.173 REMARK 500 TYR D 12 CZ TYR D 12 OH 0.120 REMARK 500 GLU D 97 CD GLU D 97 OE1 -0.078 REMARK 500 TYR D 133 CZ TYR D 133 CE2 -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 MET A 18 CA - CB - CG ANGL. DEV. = 13.1 DEGREES REMARK 500 TYR A 26 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 PHE A 30 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 GLU A 31 OE1 - CD - OE2 ANGL. DEV. = 12.6 DEGREES REMARK 500 GLU A 31 CG - CD - OE1 ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 123 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 PHE A 126 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 128 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 11 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR B 12 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR B 26 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE B 30 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 34 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP B 128 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG C 11 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET C 18 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 MET C 18 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 TYR C 26 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLU C 31 OE1 - CD - OE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG C 34 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASP C 36 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP C 128 CB - CG - OD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 MET D 1 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG D 11 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR D 12 CG - CD2 - CE2 ANGL. DEV. = -6.8 DEGREES REMARK 500 GLU D 31 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG D 34 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 GLU D 72 OE1 - CD - OE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG D 87 NH1 - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG D 87 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP D 115 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 124 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG D 124 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 117 19.38 56.90 REMARK 500 PHE B 117 13.39 58.60 REMARK 500 PHE C 117 19.73 49.21 REMARK 500 ARG D 87 136.51 -176.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE C 68 10.93 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6FDG A 1 155 UNP A0A166E508_STAAU DBREF2 6FDG A A0A166E508 1 155 DBREF1 6FDG B 1 155 UNP A0A166E508_STAAU DBREF2 6FDG B A0A166E508 1 155 DBREF1 6FDG C 1 155 UNP A0A166E508_STAAU DBREF2 6FDG C A0A166E508 1 155 DBREF1 6FDG D 1 155 UNP A0A166E508_STAAU DBREF2 6FDG D A0A166E508 1 155 SEQRES 1 A 155 MET ILE TYR SER ILE THR GLU ILE GLU ALA ARG TYR ALA SEQRES 2 A 155 GLU THR ASP LYS MET GLY VAL ILE TYR HIS GLY ASN TYR SEQRES 3 A 155 ALA THR TRP PHE GLU VAL ALA ARG LEU ASP TYR ILE SER SEQRES 4 A 155 LYS LEU GLY PHE SER TYR ALA ASP MET GLU LYS GLN GLY SEQRES 5 A 155 ILE ILE SER PRO VAL THR ASP LEU ASN VAL ASN TYR LYS SEQRES 6 A 155 LYS SER ILE PHE TYR PRO GLU LYS VAL LYS VAL LYS THR SEQRES 7 A 155 TRP VAL GLU LYS TYR SER ARG LEU ARG SER VAL TYR LYS SEQRES 8 A 155 TYR GLU ILE PHE ASN GLU LYS GLY GLU LEU ALA THR THR SEQRES 9 A 155 GLY SER THR GLU LEU ILE CYS ILE LYS GLU ASP THR PHE SEQRES 10 A 155 LYS PRO ILE ARG LEU ASP ARG TYR PHE PRO ASP TRP HIS SEQRES 11 A 155 GLU ALA TYR SER LYS VAL GLN ALA LEU ASN ASN GLU GLY SEQRES 12 A 155 LYS ILE VAL GLU ILE MET ASP GLY ILE ASP SER LEU SEQRES 1 B 155 MET ILE TYR SER ILE THR GLU ILE GLU ALA ARG TYR ALA SEQRES 2 B 155 GLU THR ASP LYS MET GLY VAL ILE TYR HIS GLY ASN TYR SEQRES 3 B 155 ALA THR TRP PHE GLU VAL ALA ARG LEU ASP TYR ILE SER SEQRES 4 B 155 LYS LEU GLY PHE SER TYR ALA ASP MET GLU LYS GLN GLY SEQRES 5 B 155 ILE ILE SER PRO VAL THR ASP LEU ASN VAL ASN TYR LYS SEQRES 6 B 155 LYS SER ILE PHE TYR PRO GLU LYS VAL LYS VAL LYS THR SEQRES 7 B 155 TRP VAL GLU LYS TYR SER ARG LEU ARG SER VAL TYR LYS SEQRES 8 B 155 TYR GLU ILE PHE ASN GLU LYS GLY GLU LEU ALA THR THR SEQRES 9 B 155 GLY SER THR GLU LEU ILE CYS ILE LYS GLU ASP THR PHE SEQRES 10 B 155 LYS PRO ILE ARG LEU ASP ARG TYR PHE PRO ASP TRP HIS SEQRES 11 B 155 GLU ALA TYR SER LYS VAL GLN ALA LEU ASN ASN GLU GLY SEQRES 12 B 155 LYS ILE VAL GLU ILE MET ASP GLY ILE ASP SER LEU SEQRES 1 C 155 MET ILE TYR SER ILE THR GLU ILE GLU ALA ARG TYR ALA SEQRES 2 C 155 GLU THR ASP LYS MET GLY VAL ILE TYR HIS GLY ASN TYR SEQRES 3 C 155 ALA THR TRP PHE GLU VAL ALA ARG LEU ASP TYR ILE SER SEQRES 4 C 155 LYS LEU GLY PHE SER TYR ALA ASP MET GLU LYS GLN GLY SEQRES 5 C 155 ILE ILE SER PRO VAL THR ASP LEU ASN VAL ASN TYR LYS SEQRES 6 C 155 LYS SER ILE PHE TYR PRO GLU LYS VAL LYS VAL LYS THR SEQRES 7 C 155 TRP VAL GLU LYS TYR SER ARG LEU ARG SER VAL TYR LYS SEQRES 8 C 155 TYR GLU ILE PHE ASN GLU LYS GLY GLU LEU ALA THR THR SEQRES 9 C 155 GLY SER THR GLU LEU ILE CYS ILE LYS GLU ASP THR PHE SEQRES 10 C 155 LYS PRO ILE ARG LEU ASP ARG TYR PHE PRO ASP TRP HIS SEQRES 11 C 155 GLU ALA TYR SER LYS VAL GLN ALA LEU ASN ASN GLU GLY SEQRES 12 C 155 LYS ILE VAL GLU ILE MET ASP GLY ILE ASP SER LEU SEQRES 1 D 155 MET ILE TYR SER ILE THR GLU ILE GLU ALA ARG TYR ALA SEQRES 2 D 155 GLU THR ASP LYS MET GLY VAL ILE TYR HIS GLY ASN TYR SEQRES 3 D 155 ALA THR TRP PHE GLU VAL ALA ARG LEU ASP TYR ILE SER SEQRES 4 D 155 LYS LEU GLY PHE SER TYR ALA ASP MET GLU LYS GLN GLY SEQRES 5 D 155 ILE ILE SER PRO VAL THR ASP LEU ASN VAL ASN TYR LYS SEQRES 6 D 155 LYS SER ILE PHE TYR PRO GLU LYS VAL LYS VAL LYS THR SEQRES 7 D 155 TRP VAL GLU LYS TYR SER ARG LEU ARG SER VAL TYR LYS SEQRES 8 D 155 TYR GLU ILE PHE ASN GLU LYS GLY GLU LEU ALA THR THR SEQRES 9 D 155 GLY SER THR GLU LEU ILE CYS ILE LYS GLU ASP THR PHE SEQRES 10 D 155 LYS PRO ILE ARG LEU ASP ARG TYR PHE PRO ASP TRP HIS SEQRES 11 D 155 GLU ALA TYR SER LYS VAL GLN ALA LEU ASN ASN GLU GLY SEQRES 12 D 155 LYS ILE VAL GLU ILE MET ASP GLY ILE ASP SER LEU FORMUL 5 HOH *314(H2 O) HELIX 1 AA1 ARG A 11 THR A 15 5 5 HELIX 2 AA2 TYR A 22 GLY A 24 5 3 HELIX 3 AA3 ASN A 25 GLY A 42 1 18 HELIX 4 AA4 SER A 44 GLN A 51 1 8 HELIX 5 AA5 ARG A 121 PHE A 126 1 6 HELIX 6 AA6 PHE A 126 GLU A 142 1 17 HELIX 7 AA7 ARG B 11 THR B 15 5 5 HELIX 8 AA8 TYR B 22 GLY B 24 5 3 HELIX 9 AA9 ASN B 25 GLY B 42 1 18 HELIX 10 AB1 SER B 44 GLN B 51 1 8 HELIX 11 AB2 ARG B 121 PHE B 126 1 6 HELIX 12 AB3 PHE B 126 GLU B 142 1 17 HELIX 13 AB4 ARG C 11 THR C 15 5 5 HELIX 14 AB5 TYR C 22 GLY C 24 5 3 HELIX 15 AB6 ASN C 25 GLY C 42 1 18 HELIX 16 AB7 SER C 44 GLN C 51 1 8 HELIX 17 AB8 ARG C 121 PHE C 126 1 6 HELIX 18 AB9 PHE C 126 GLU C 142 1 17 HELIX 19 AC1 ARG D 11 THR D 15 5 5 HELIX 20 AC2 TYR D 22 GLY D 24 5 3 HELIX 21 AC3 ASN D 25 GLY D 42 1 18 HELIX 22 AC4 SER D 44 GLN D 51 1 8 HELIX 23 AC5 ARG D 121 PHE D 126 1 6 HELIX 24 AC6 PHE D 126 GLU D 142 1 17 SHEET 1 AA112 VAL A 146 GLU A 147 0 SHEET 2 AA112 ILE A 2 GLU A 9 1 N TYR A 3 O VAL A 146 SHEET 3 AA112 LYS A 73 TYR A 83 -1 O VAL A 74 N ILE A 8 SHEET 4 AA112 SER A 88 PHE A 95 -1 O GLU A 93 N LYS A 77 SHEET 5 AA112 LEU A 101 LEU A 109 -1 O ALA A 102 N ILE A 94 SHEET 6 AA112 VAL A 57 TYR A 64 -1 N ASN A 63 O THR A 104 SHEET 7 AA112 VAL B 57 TYR B 64 -1 O VAL B 62 N LEU A 60 SHEET 8 AA112 LEU B 101 ILE B 110 -1 O THR B 104 N ASN B 63 SHEET 9 AA112 ARG B 87 PHE B 95 -1 N ILE B 94 O ALA B 102 SHEET 10 AA112 LYS B 73 TYR B 83 -1 N LYS B 75 O PHE B 95 SHEET 11 AA112 ILE B 2 GLU B 9 -1 N ILE B 8 O VAL B 74 SHEET 12 AA112 VAL B 146 GLU B 147 1 O VAL B 146 N TYR B 3 SHEET 1 AA2 2 ILE A 53 ILE A 54 0 SHEET 2 AA2 2 ILE A 112 LYS A 113 -1 O ILE A 112 N ILE A 54 SHEET 1 AA3 2 ILE B 53 ILE B 54 0 SHEET 2 AA3 2 ILE B 112 LYS B 113 -1 O ILE B 112 N ILE B 54 SHEET 1 AA412 VAL C 146 GLU C 147 0 SHEET 2 AA412 ILE C 2 GLU C 9 1 N TYR C 3 O VAL C 146 SHEET 3 AA412 LYS C 73 TYR C 83 -1 O VAL C 74 N ILE C 8 SHEET 4 AA412 SER C 88 PHE C 95 -1 O GLU C 93 N LYS C 77 SHEET 5 AA412 LEU C 101 LEU C 109 -1 O ALA C 102 N ILE C 94 SHEET 6 AA412 VAL C 57 TYR C 64 -1 N ASN C 63 O THR C 104 SHEET 7 AA412 VAL D 57 TYR D 64 -1 O VAL D 62 N LEU C 60 SHEET 8 AA412 LEU D 101 LEU D 109 -1 O THR D 104 N ASN D 63 SHEET 9 AA412 SER D 88 PHE D 95 -1 N ILE D 94 O ALA D 102 SHEET 10 AA412 LYS D 73 TYR D 83 -1 N LYS D 77 O GLU D 93 SHEET 11 AA412 ILE D 2 GLU D 9 -1 N ILE D 8 O VAL D 74 SHEET 12 AA412 VAL D 146 GLU D 147 1 O VAL D 146 N TYR D 3 SHEET 1 AA5 2 ILE C 53 ILE C 54 0 SHEET 2 AA5 2 ILE C 112 LYS C 113 -1 O ILE C 112 N ILE C 54 SHEET 1 AA6 2 ILE D 53 ILE D 54 0 SHEET 2 AA6 2 ILE D 112 LYS D 113 -1 O ILE D 112 N ILE D 54 CISPEP 1 TYR A 70 PRO A 71 0 -7.79 CISPEP 2 TYR B 70 PRO B 71 0 8.65 CISPEP 3 TYR C 70 PRO C 71 0 -3.35 CISPEP 4 TYR D 70 PRO D 71 0 5.52 CRYST1 53.607 90.783 75.378 90.00 92.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018654 0.000000 0.000650 0.00000 SCALE2 0.000000 0.011015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013275 0.00000