HEADER TRANSFERASE 27-DEC-17 6FDY TITLE UNC-51-LIKE KINASE 3 (ULK3) IN COMPLEX WITH BOSUTINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ULK3; COMPND 3 CHAIN: U; COMPND 4 SYNONYM: UNC-51-LIKE KINASE 3; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ULK3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE INHIBITOR DFG-IN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MATHEA,E.SALAH,M.MOROGLU,A.SCORAH,T.KROJER,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,K.HUBER,S.KNAPP REVDAT 2 17-JAN-24 6FDY 1 REMARK REVDAT 1 01-AUG-18 6FDY 0 JRNL AUTH S.MATHEA,E.SALAH,M.MOROGLU,A.SCORAH,F.VON DELFT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,K.HUBER,S.KNAPP JRNL TITL UNC-51-LIKE KINASE 3 (ULK3) IN COMPLEX WITH BOSUTINIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2173 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1989 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2945 ; 1.898 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4590 ; 1.120 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;33.923 ;23.656 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;12.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.025 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2576 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 441 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1043 ; 2.301 ; 2.342 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1042 ; 2.289 ; 2.339 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1302 ; 3.145 ; 3.498 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1302 ; 3.144 ; 3.499 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 3.158 ; 2.602 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1131 ; 3.157 ; 2.603 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1644 ; 4.668 ; 3.798 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2249 ; 5.512 ;27.444 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2232 ; 5.495 ;27.293 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WNP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5; 0.2 M SODIUM REMARK 280 CITRATE; 30% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.18750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.70300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.18750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.70300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.18750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.70300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.18750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 84.70300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA U 2 REMARK 465 GLY U 3 REMARK 465 PRO U 4 REMARK 465 GLY U 5 REMARK 465 TRP U 6 REMARK 465 GLY U 7 REMARK 465 PRO U 8 REMARK 465 SER U 22 REMARK 465 GLY U 23 REMARK 465 THR U 24 REMARK 465 TYR U 25 REMARK 465 MET U 275 REMARK 465 PRO U 276 REMARK 465 SER U 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO U 9 N CB CG CD REMARK 470 ARG U 10 CD NE CZ NH1 NH2 REMARK 470 ASP U 12 CG OD1 OD2 REMARK 470 ALA U 26 N CA CB REMARK 470 LYS U 34 CE NZ REMARK 470 LYS U 35 CG CD CE NZ REMARK 470 LYS U 49 CG CD CE NZ REMARK 470 LYS U 67 CE NZ REMARK 470 ARG U 70 CZ NH1 NH2 REMARK 470 SER U 84 OG REMARK 470 ARG U 101 CD NE CZ NH1 NH2 REMARK 470 LYS U 112 CD CE NZ REMARK 470 GLN U 141 CD OE1 NE2 REMARK 470 LEU U 148 CG CD1 CD2 REMARK 470 GLU U 149 CG CD OE1 OE2 REMARK 470 LYS U 150 CG CD CE NZ REMARK 470 TRP U 167 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP U 167 CZ3 CH2 REMARK 470 ARG U 188 CD NE CZ NH1 NH2 REMARK 470 ARG U 216 NE CZ NH1 NH2 REMARK 470 ARG U 229 CD NE CZ NH1 NH2 REMARK 470 GLU U 232 CG CD OE1 OE2 REMARK 470 LEU U 235 CG CD1 CD2 REMARK 470 ARG U 236 CG CD NE CZ NH1 NH2 REMARK 470 LEU U 238 CD1 CD2 REMARK 470 ARG U 241 CG CD NE CZ NH1 NH2 REMARK 470 ARG U 257 NE CZ NH1 NH2 REMARK 470 GLU U 273 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH U 401 O HOH U 414 1.02 REMARK 500 O HOH U 483 O HOH U 513 1.03 REMARK 500 O HOH U 404 O HOH U 407 1.23 REMARK 500 O HOH U 411 O HOH U 511 1.27 REMARK 500 O HOH U 487 O HOH U 491 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP U 98 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU U 153 CB - CG - CD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG U 174 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 MET U 184 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN U 52 166.72 -47.82 REMARK 500 ASP U 83 -155.91 -133.04 REMARK 500 ARG U 107 -58.24 64.38 REMARK 500 ASP U 137 50.08 -147.80 REMARK 500 ASP U 157 74.57 58.05 REMARK 500 LEU U 251 36.43 -91.89 REMARK 500 VAL U 270 -64.65 -96.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DB8 U 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DB8 U 302 DBREF 6FDY U 2 277 UNP Q6PHR2 ULK3_HUMAN 2 277 SEQRES 1 U 276 ALA GLY PRO GLY TRP GLY PRO PRO ARG LEU ASP GLY PHE SEQRES 2 U 276 ILE LEU THR GLU ARG LEU GLY SER GLY THR TYR ALA THR SEQRES 3 U 276 VAL TYR LYS ALA TYR ALA LYS LYS ASP THR ARG GLU VAL SEQRES 4 U 276 VAL ALA ILE LYS CYS VAL ALA LYS LYS SER LEU ASN LYS SEQRES 5 U 276 ALA SER VAL GLU ASN LEU LEU THR GLU ILE GLU ILE LEU SEQRES 6 U 276 LYS GLY ILE ARG HIS PRO HIS ILE VAL GLN LEU LYS ASP SEQRES 7 U 276 PHE GLN TRP ASP SER ASP ASN ILE TYR LEU ILE MET GLU SEQRES 8 U 276 PHE CYS ALA GLY GLY ASP LEU SER ARG PHE ILE HIS THR SEQRES 9 U 276 ARG ARG ILE LEU PRO GLU LYS VAL ALA ARG VAL PHE MET SEQRES 10 U 276 GLN GLN LEU ALA SER ALA LEU GLN PHE LEU HIS GLU ARG SEQRES 11 U 276 ASN ILE SER HIS LEU ASP LEU LYS PRO GLN ASN ILE LEU SEQRES 12 U 276 LEU SER SER LEU GLU LYS PRO HIS LEU LYS LEU ALA ASP SEQRES 13 U 276 PHE GLY PHE ALA GLN HIS MET SER PRO TRP ASP GLU LYS SEQRES 14 U 276 HIS VAL LEU ARG GLY SER PRO LEU TYR MET ALA PRO GLU SEQRES 15 U 276 MET VAL CYS GLN ARG GLN TYR ASP ALA ARG VAL ASP LEU SEQRES 16 U 276 TRP SER MET GLY VAL ILE LEU TYR GLU ALA LEU PHE GLY SEQRES 17 U 276 GLN PRO PRO PHE ALA SER ARG SER PHE SER GLU LEU GLU SEQRES 18 U 276 GLU LYS ILE ARG SER ASN ARG VAL ILE GLU LEU PRO LEU SEQRES 19 U 276 ARG PRO LEU LEU SER ARG ASP CYS ARG ASP LEU LEU GLN SEQRES 20 U 276 ARG LEU LEU GLU ARG ASP PRO SER ARG ARG ILE SER PHE SEQRES 21 U 276 GLN ASP PHE PHE ALA HIS PRO TRP VAL ASP LEU GLU HIS SEQRES 22 U 276 MET PRO SER HET DB8 U 301 36 HET DB8 U 302 36 HETNAM DB8 4-[(2,4-DICHLORO-5-METHOXYPHENYL)AMINO]-6-METHOXY-7-[3- HETNAM 2 DB8 (4-METHYLPIPERAZIN-1-YL)PROPOXY]QUINOLINE-3- HETNAM 3 DB8 CARBONITRILE HETSYN DB8 BOSUTINIB FORMUL 2 DB8 2(C26 H29 CL2 N5 O3) FORMUL 4 HOH *127(H2 O) HELIX 1 AA1 LYS U 49 LEU U 51 5 3 HELIX 2 AA2 ASN U 52 GLY U 68 1 17 HELIX 3 AA3 ASP U 98 ARG U 107 1 10 HELIX 4 AA4 PRO U 110 ARG U 131 1 22 HELIX 5 AA5 LYS U 139 GLN U 141 5 3 HELIX 6 AA6 ALA U 181 GLN U 187 1 7 HELIX 7 AA7 ARG U 193 GLY U 209 1 17 HELIX 8 AA8 SER U 217 SER U 227 1 11 HELIX 9 AA9 SER U 240 LEU U 251 1 12 HELIX 10 AB1 SER U 260 ALA U 266 1 7 SHEET 1 AA1 5 PHE U 14 GLY U 21 0 SHEET 2 AA1 5 THR U 27 ALA U 33 -1 O VAL U 28 N GLY U 21 SHEET 3 AA1 5 ASP U 36 ALA U 47 -1 O ILE U 43 N TYR U 29 SHEET 4 AA1 5 ASN U 86 GLU U 92 -1 O LEU U 89 N LYS U 44 SHEET 5 AA1 5 LEU U 77 TRP U 82 -1 N GLN U 81 O TYR U 88 SHEET 1 AA2 2 ILE U 133 SER U 134 0 SHEET 2 AA2 2 GLN U 162 HIS U 163 -1 O GLN U 162 N SER U 134 SHEET 1 AA3 2 ILE U 143 LEU U 145 0 SHEET 2 AA3 2 LEU U 153 LEU U 155 -1 O LYS U 154 N LEU U 144 CISPEP 1 ARG U 236 PRO U 237 0 -6.35 SITE 1 AC1 10 LEU U 20 ALA U 42 VAL U 75 MET U 91 SITE 2 AC1 10 GLU U 92 CYS U 94 ASN U 142 LEU U 144 SITE 3 AC1 10 ASP U 157 HOH U 485 SITE 1 AC2 8 LEU U 173 GLY U 175 MET U 180 PHE U 218 SITE 2 AC2 8 SER U 219 GLU U 222 HOH U 432 HOH U 494 CRYST1 92.375 169.406 45.919 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021777 0.00000