HEADER DNA BINDING PROTEIN 04-JAN-18 6FF9 TITLE MUTANT R280K OF HUMAN P53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ANTIGEN NY-CO-13,PHOSPHOPROTEIN P53,TUMOR SUPPRESSOR P53; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53, P53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P53, MUTANT, DNA BINDING, ANTICANCER THERAPY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.G.TROVAO,A.S.GOMES,B.PINHEIRO,A.L.CARVALHO,M.J.ROMAO REVDAT 2 17-JAN-24 6FF9 1 REMARK REVDAT 1 25-APR-18 6FF9 0 JRNL AUTH A.S.GOMES,F.TROVAO,B.ANDRADE PINHEIRO,F.FREIRE,S.GOMES, JRNL AUTH 2 C.OLIVEIRA,L.DOMINGUES,M.J.ROMAO,L.SARAIVA,A.L.CARVALHO JRNL TITL THE CRYSTAL STRUCTURE OF THE R280K MUTANT OF HUMAN P53 JRNL TITL 2 EXPLAINS THE LOSS OF DNA BINDING. JRNL REF INT J MOL SCI V. 19 2018 JRNL REFN ESSN 1422-0067 JRNL PMID 29652801 JRNL DOI 10.3390/IJMS19041184 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 47903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0510 - 1.9990 0.95 3472 207 0.2660 0.3140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.102 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.21000 REMARK 3 B22 (A**2) : 43.98000 REMARK 3 B33 (A**2) : -22.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.7510 REMARK 3 OPERATOR: H, K, L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 6 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: A REMARK 3 SELECTION : B REMARK 3 ATOM PAIRS NUMBER : 21798 REMARK 3 RMSD : 0.110 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: A REMARK 3 SELECTION : C REMARK 3 ATOM PAIRS NUMBER : 22280 REMARK 3 RMSD : 0.090 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: A REMARK 3 SELECTION : D REMARK 3 ATOM PAIRS NUMBER : 21778 REMARK 3 RMSD : 0.110 REMARK 3 NCS GROUP : 4 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: B REMARK 3 SELECTION : C REMARK 3 ATOM PAIRS NUMBER : 22126 REMARK 3 RMSD : 0.100 REMARK 3 NCS GROUP : 5 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: B REMARK 3 SELECTION : D REMARK 3 ATOM PAIRS NUMBER : 22324 REMARK 3 RMSD : 0.080 REMARK 3 NCS GROUP : 6 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: C REMARK 3 SELECTION : D REMARK 3 ATOM PAIRS NUMBER : 22220 REMARK 3 RMSD : 0.100 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6FF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.83300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OCJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.72250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 225 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 227 O HOH C 401 2.17 REMARK 500 OG1 THR B 123 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 141 CB CYS C 141 SG -0.100 REMARK 500 CYS D 141 CB CYS D 141 SG -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 273 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 181 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 267 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 282 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 282 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 175 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 175 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP C 228 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG C 267 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG D 273 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG D 282 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG D 282 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 183 58.69 -90.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 CYS A 238 SG 113.1 REMARK 620 3 CYS A 242 SG 114.4 113.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 CYS B 238 SG 111.1 REMARK 620 3 CYS B 242 SG 119.7 116.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 CYS C 238 SG 111.7 REMARK 620 3 CYS C 242 SG 118.5 118.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 176 SG REMARK 620 2 CYS D 238 SG 109.5 REMARK 620 3 CYS D 242 SG 114.0 113.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 301 DBREF 6FF9 A 97 289 UNP P04637 P53_HUMAN 58 250 DBREF 6FF9 B 97 289 UNP P04637 P53_HUMAN 58 250 DBREF 6FF9 C 97 289 UNP P04637 P53_HUMAN 58 250 DBREF 6FF9 D 97 289 UNP P04637 P53_HUMAN 58 250 SEQADV 6FF9 LYS A 280 UNP P04637 ARG 241 ENGINEERED MUTATION SEQADV 6FF9 LYS B 280 UNP P04637 ARG 241 ENGINEERED MUTATION SEQADV 6FF9 LYS C 280 UNP P04637 ARG 241 ENGINEERED MUTATION SEQADV 6FF9 LYS D 280 UNP P04637 ARG 241 ENGINEERED MUTATION SEQRES 1 A 193 VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY PHE SEQRES 2 A 193 ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER VAL SEQRES 3 A 193 THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE CYS SEQRES 4 A 193 GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL ASP SEQRES 5 A 193 SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET ALA SEQRES 6 A 193 ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL ARG SEQRES 7 A 193 ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP GLY SEQRES 8 A 193 LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY ASN SEQRES 9 A 193 LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE ARG SEQRES 10 A 193 HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL GLY SEQRES 11 A 193 SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS ASN SEQRES 12 A 193 SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE LEU SEQRES 13 A 193 THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU LEU SEQRES 14 A 193 GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA CYS PRO SEQRES 15 A 193 GLY LYS ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 B 193 VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY PHE SEQRES 2 B 193 ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER VAL SEQRES 3 B 193 THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE CYS SEQRES 4 B 193 GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL ASP SEQRES 5 B 193 SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET ALA SEQRES 6 B 193 ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL ARG SEQRES 7 B 193 ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP GLY SEQRES 8 B 193 LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY ASN SEQRES 9 B 193 LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE ARG SEQRES 10 B 193 HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL GLY SEQRES 11 B 193 SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS ASN SEQRES 12 B 193 SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE LEU SEQRES 13 B 193 THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU LEU SEQRES 14 B 193 GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA CYS PRO SEQRES 15 B 193 GLY LYS ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 C 193 VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY PHE SEQRES 2 C 193 ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER VAL SEQRES 3 C 193 THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE CYS SEQRES 4 C 193 GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL ASP SEQRES 5 C 193 SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET ALA SEQRES 6 C 193 ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL ARG SEQRES 7 C 193 ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP GLY SEQRES 8 C 193 LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY ASN SEQRES 9 C 193 LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE ARG SEQRES 10 C 193 HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL GLY SEQRES 11 C 193 SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS ASN SEQRES 12 C 193 SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE LEU SEQRES 13 C 193 THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU LEU SEQRES 14 C 193 GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA CYS PRO SEQRES 15 C 193 GLY LYS ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 D 193 VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY PHE SEQRES 2 D 193 ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER VAL SEQRES 3 D 193 THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE CYS SEQRES 4 D 193 GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL ASP SEQRES 5 D 193 SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET ALA SEQRES 6 D 193 ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL ARG SEQRES 7 D 193 ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP GLY SEQRES 8 D 193 LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY ASN SEQRES 9 D 193 LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE ARG SEQRES 10 D 193 HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL GLY SEQRES 11 D 193 SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS ASN SEQRES 12 D 193 SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE LEU SEQRES 13 D 193 THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU LEU SEQRES 14 D 193 GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA CYS PRO SEQRES 15 D 193 GLY LYS ASP ARG ARG THR GLU GLU GLU ASN LEU HET ZN A 301 1 HET ZN B 301 1 HET ZN C 301 1 HET ZN D 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *336(H2 O) HELIX 1 AA1 GLN A 104 GLY A 108 5 5 HELIX 2 AA2 GLN A 165 MET A 169 5 5 HELIX 3 AA3 CYS A 176 ARG A 181 1 6 HELIX 4 AA4 CYS A 277 ASN A 288 1 12 HELIX 5 AA5 GLN B 165 MET B 169 5 5 HELIX 6 AA6 CYS B 176 CYS B 182 1 7 HELIX 7 AA7 CYS B 277 ASN B 288 1 12 HELIX 8 AA8 GLN C 165 MET C 169 5 5 HELIX 9 AA9 CYS C 176 ARG C 181 1 6 HELIX 10 AB1 CYS C 277 ASN C 288 1 12 HELIX 11 AB2 GLN D 165 MET D 169 5 5 HELIX 12 AB3 CYS D 176 CYS D 182 1 7 HELIX 13 AB4 CYS D 277 ASN D 288 1 12 SHEET 1 AA1 4 ARG A 110 GLY A 112 0 SHEET 2 AA1 4 CYS A 141 TRP A 146 -1 O TRP A 146 N ARG A 110 SHEET 3 AA1 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 AA1 4 ILE A 195 VAL A 197 -1 N ARG A 196 O ASN A 235 SHEET 1 AA2 7 CYS A 124 SER A 127 0 SHEET 2 AA2 7 LYS A 132 CYS A 135 -1 O PHE A 134 N THR A 125 SHEET 3 AA2 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 AA2 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 AA2 7 ARG A 156 TYR A 163 -1 N ARG A 156 O GLU A 258 SHEET 6 AA2 7 HIS A 214 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 AA2 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 AA3 4 ARG B 110 GLY B 112 0 SHEET 2 AA3 4 CYS B 141 TRP B 146 -1 O TRP B 146 N ARG B 110 SHEET 3 AA3 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 AA3 4 ILE B 195 VAL B 197 -1 N ARG B 196 O ASN B 235 SHEET 1 AA4 7 CYS B 124 SER B 127 0 SHEET 2 AA4 7 LYS B 132 CYS B 135 -1 O PHE B 134 N THR B 125 SHEET 3 AA4 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 AA4 7 ILE B 251 GLU B 258 -1 N LEU B 257 O LEU B 265 SHEET 5 AA4 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 AA4 7 HIS B 214 PRO B 219 -1 O VAL B 218 N VAL B 157 SHEET 7 AA4 7 GLU B 204 ASP B 207 -1 N GLU B 204 O VAL B 217 SHEET 1 AA5 4 ARG C 110 GLY C 112 0 SHEET 2 AA5 4 CYS C 141 TRP C 146 -1 O TRP C 146 N ARG C 110 SHEET 3 AA5 4 THR C 230 TYR C 236 -1 O THR C 230 N LEU C 145 SHEET 4 AA5 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 AA6 7 CYS C 124 SER C 127 0 SHEET 2 AA6 7 LYS C 132 CYS C 135 -1 O PHE C 134 N THR C 125 SHEET 3 AA6 7 LEU C 264 VAL C 274 1 O GLU C 271 N MET C 133 SHEET 4 AA6 7 ILE C 251 GLU C 258 -1 N LEU C 257 O LEU C 265 SHEET 5 AA6 7 ARG C 156 TYR C 163 -1 N ARG C 156 O GLU C 258 SHEET 6 AA6 7 HIS C 214 PRO C 219 -1 O VAL C 218 N VAL C 157 SHEET 7 AA6 7 GLU C 204 ASP C 207 -1 N GLU C 204 O VAL C 217 SHEET 1 AA7 4 ARG D 110 GLY D 112 0 SHEET 2 AA7 4 CYS D 141 TRP D 146 -1 O TRP D 146 N ARG D 110 SHEET 3 AA7 4 THR D 230 TYR D 236 -1 O THR D 230 N LEU D 145 SHEET 4 AA7 4 ILE D 195 VAL D 197 -1 N ARG D 196 O ASN D 235 SHEET 1 AA8 7 CYS D 124 SER D 127 0 SHEET 2 AA8 7 LYS D 132 CYS D 135 -1 O PHE D 134 N THR D 125 SHEET 3 AA8 7 LEU D 264 VAL D 274 1 O GLU D 271 N MET D 133 SHEET 4 AA8 7 ILE D 251 GLU D 258 -1 N LEU D 257 O LEU D 265 SHEET 5 AA8 7 ARG D 156 TYR D 163 -1 N ARG D 156 O GLU D 258 SHEET 6 AA8 7 HIS D 214 PRO D 219 -1 O VAL D 218 N VAL D 157 SHEET 7 AA8 7 GLU D 204 ASP D 207 -1 N GLU D 204 O VAL D 217 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 238 ZN ZN A 301 1555 1555 2.34 LINK SG CYS A 242 ZN ZN A 301 1555 1555 2.27 LINK SG CYS B 176 ZN ZN B 301 1555 1555 2.39 LINK SG CYS B 238 ZN ZN B 301 1555 1555 2.38 LINK SG CYS B 242 ZN ZN B 301 1555 1555 2.13 LINK SG CYS C 176 ZN ZN C 301 1555 1555 2.36 LINK SG CYS C 238 ZN ZN C 301 1555 1555 2.38 LINK SG CYS C 242 ZN ZN C 301 1555 1555 2.15 LINK SG CYS D 176 ZN ZN D 301 1555 1555 2.42 LINK SG CYS D 238 ZN ZN D 301 1555 1555 2.35 LINK SG CYS D 242 ZN ZN D 301 1555 1555 2.19 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC3 4 CYS C 176 HIS C 179 CYS C 238 CYS C 242 SITE 1 AC4 4 CYS D 176 HIS D 179 CYS D 238 CYS D 242 CRYST1 68.569 69.445 83.335 90.00 90.04 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014584 0.000000 0.000010 0.00000 SCALE2 0.000000 0.014400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012000 0.00000