HEADER HYDROLASE 09-JAN-18 6FFW TITLE PHOSPHOTRIESTERASE PTE_A53_5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHION HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOTRIESTERASE,PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS DIMINUTA; SOURCE 4 ORGANISM_TAXID: 293; SOURCE 5 GENE: OPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOENZYME, TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM,N.AGGARWAL,S.ALBECK,T.UNGER,S.HAMER ROGOTNER,I.SILMAN,H.LEADER, AUTHOR 2 Y.ASHANI,M.GOLDSMITH,P.GREISEN,D.TAWFIK,L.J.SUSSMAN REVDAT 2 17-JAN-24 6FFW 1 LINK REVDAT 1 13-MAR-19 6FFW 0 JRNL AUTH O.DYM,N.AGGARWAL,S.ALBECK,T.UNGER,S.HAMER ROGOTNER,I.SILMAN, JRNL AUTH 2 H.LEADER,Y.ASHANI,M.GOLDSMITH,P.GREISEN,D.TAWFIK,L.J.SUSSMAN JRNL TITL PHOSPHOTRIESTERASE PTE_A53_5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1-2575_1692: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 99474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4794 - 4.6338 1.00 3245 175 0.1426 0.1746 REMARK 3 2 4.6338 - 3.6825 1.00 3197 160 0.1388 0.1564 REMARK 3 3 3.6825 - 3.2184 1.00 3175 173 0.1639 0.1773 REMARK 3 4 3.2184 - 2.9247 1.00 3154 201 0.1688 0.1986 REMARK 3 5 2.9247 - 2.7154 1.00 3137 185 0.1653 0.1782 REMARK 3 6 2.7154 - 2.5555 1.00 3192 174 0.1707 0.1785 REMARK 3 7 2.5555 - 2.4277 1.00 3174 162 0.1643 0.1929 REMARK 3 8 2.4277 - 2.3221 1.00 3134 176 0.1660 0.1598 REMARK 3 9 2.3221 - 2.2328 0.99 3149 164 0.1727 0.2080 REMARK 3 10 2.2328 - 2.1558 0.99 3151 173 0.1646 0.1755 REMARK 3 11 2.1558 - 2.0884 1.00 3165 134 0.1622 0.2000 REMARK 3 12 2.0884 - 2.0288 1.00 3145 177 0.1693 0.2246 REMARK 3 13 2.0288 - 1.9754 1.00 3179 160 0.1691 0.2065 REMARK 3 14 1.9754 - 1.9272 1.00 3150 156 0.1741 0.2065 REMARK 3 15 1.9272 - 1.8834 0.99 3179 141 0.1699 0.2043 REMARK 3 16 1.8834 - 1.8434 1.00 3158 144 0.1792 0.2406 REMARK 3 17 1.8434 - 1.8065 1.00 3158 172 0.1673 0.1770 REMARK 3 18 1.8065 - 1.7724 1.00 3111 168 0.1613 0.1717 REMARK 3 19 1.7724 - 1.7408 1.00 3186 163 0.1576 0.1898 REMARK 3 20 1.7408 - 1.7113 1.00 3113 160 0.1549 0.1874 REMARK 3 21 1.7113 - 1.6837 1.00 3165 172 0.1564 0.1887 REMARK 3 22 1.6837 - 1.6578 0.99 3147 162 0.1560 0.1814 REMARK 3 23 1.6578 - 1.6334 0.99 3117 171 0.1558 0.1701 REMARK 3 24 1.6334 - 1.6104 1.00 3079 194 0.1523 0.1759 REMARK 3 25 1.6104 - 1.5886 0.99 3177 157 0.1623 0.1843 REMARK 3 26 1.5886 - 1.5680 0.99 3067 164 0.1630 0.1894 REMARK 3 27 1.5680 - 1.5484 0.99 3197 135 0.1652 0.2052 REMARK 3 28 1.5484 - 1.5298 0.99 3128 153 0.1618 0.2010 REMARK 3 29 1.5298 - 1.5120 0.99 3102 173 0.1649 0.1727 REMARK 3 30 1.5120 - 1.4950 0.98 3073 171 0.1741 0.1899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5192 REMARK 3 ANGLE : 0.911 7051 REMARK 3 CHIRALITY : 0.075 823 REMARK 3 PLANARITY : 0.005 916 REMARK 3 DIHEDRAL : 5.457 2990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99608 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 23.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02300 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.10300 REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HZY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000 0.1M TRIS PH=7.5, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.75500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 30 REMARK 465 THR A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 LEU A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 ILE B 27 REMARK 465 SER B 28 REMARK 465 GLU B 29 REMARK 465 PHE B 30 REMARK 465 THR B 31 REMARK 465 ASN B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 ARG A 67 CD NE CZ NH1 NH2 REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 GLN A 173 CD OE1 NE2 REMARK 470 ARG B 89 CZ NH1 NH2 REMARK 470 ARG B 164 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CAL D6K A 404 O HOH A 501 1.58 REMARK 500 NZ LYS A 169 C FMT A 401 1.61 REMARK 500 OD2 ASP B 301 O HOH B 1101 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 522 O HOH A 783 2355 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 46 CG1 - CB - CG2 ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -145.96 -142.09 REMARK 500 THR A 128 -165.83 -108.99 REMARK 500 TRP A 131 -147.36 -103.81 REMARK 500 GLU A 159 -135.07 54.28 REMARK 500 PHE A 306 101.77 -160.44 REMARK 500 TYR A 309 -156.35 -135.96 REMARK 500 VAL A 351 -58.11 -120.89 REMARK 500 SER B 61 -146.18 -140.16 REMARK 500 THR B 128 -166.76 -108.39 REMARK 500 TRP B 131 -146.11 -102.91 REMARK 500 GLU B 159 -133.77 54.54 REMARK 500 TYR B 309 -153.69 -135.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1420 DISTANCE = 6.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 119.5 REMARK 620 3 ASP A 301 OD1 84.7 90.2 REMARK 620 4 FMT A 401 O1 93.4 88.8 177.1 REMARK 620 5 D6K A 404 OAF 122.5 116.0 81.4 101.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 ND1 REMARK 620 2 HIS A 230 NE2 94.6 REMARK 620 3 FMT A 401 O2 104.9 111.0 REMARK 620 4 HOH A 501 O 95.6 131.3 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 57 NE2 118.9 REMARK 620 3 ASP B 301 OD1 83.5 88.1 REMARK 620 4 FMT B1003 O2 93.3 90.1 175.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 201 ND1 REMARK 620 2 HIS B 230 NE2 94.6 REMARK 620 3 FMT B1003 O1 104.2 110.0 REMARK 620 4 HOH B1323 O 90.5 128.0 118.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D6K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FMT B 1003 and LYS B REMARK 800 169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FEE RELATED DB: PDB REMARK 900 RELATED ID: 6FEF RELATED DB: PDB REMARK 900 RELATED ID: 6FEI RELATED DB: PDB REMARK 900 RELATED ID: 6FEV RELATED DB: PDB DBREF 6FFW A 32 365 UNP P0A434 OPD_BREDI 32 365 DBREF 6FFW B 32 365 UNP P0A434 OPD_BREDI 32 365 SEQADV 6FFW ILE A 26 UNP P0A434 EXPRESSION TAG SEQADV 6FFW SER A 27 UNP P0A434 EXPRESSION TAG SEQADV 6FFW GLU A 28 UNP P0A434 EXPRESSION TAG SEQADV 6FFW PHE A 30 UNP P0A434 EXPRESSION TAG SEQADV 6FFW THR A 31 UNP P0A434 EXPRESSION TAG SEQADV 6FFW ASN A 32 UNP P0A434 GLY 32 CONFLICT SEQADV 6FFW SER A 33 UNP P0A434 THR 33 CONFLICT SEQADV 6FFW ALA A 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FFW VAL A 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FFW ALA A 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FFW GLU A 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FFW GLN A 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FFW ARG A 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FFW PHE A 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FFW GLY A 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FFW ASN A 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FFW SER A 319 UNP P0A434 ARG 319 CONFLICT SEQADV 6FFW ILE B 27 UNP P0A434 EXPRESSION TAG SEQADV 6FFW SER B 28 UNP P0A434 EXPRESSION TAG SEQADV 6FFW GLU B 29 UNP P0A434 EXPRESSION TAG SEQADV 6FFW PHE B 30 UNP P0A434 EXPRESSION TAG SEQADV 6FFW THR B 31 UNP P0A434 EXPRESSION TAG SEQADV 6FFW ASN B 32 UNP P0A434 GLY 32 CONFLICT SEQADV 6FFW SER B 33 UNP P0A434 THR 33 CONFLICT SEQADV 6FFW ALA B 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FFW VAL B 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FFW ALA B 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FFW GLU B 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FFW GLN B 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FFW ARG B 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FFW PHE B 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FFW GLY B 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FFW ASN B 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FFW SER B 319 UNP P0A434 ARG 319 CONFLICT SEQRES 1 A 339 ILE SER GLU PHE THR ASN SER GLY ASP ARG ILE ASN THR SEQRES 2 A 339 VAL ARG GLY PRO ILE THR ILE SER GLU ALA GLY PHE THR SEQRES 3 A 339 LEU THR HIS GLU HIS ILE CYS GLY SER SER ALA GLY PHE SEQRES 4 A 339 LEU ARG ALA TRP PRO GLU PHE PHE GLY SER ARG ALA ALA SEQRES 5 A 339 LEU VAL GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG SEQRES 6 A 339 ALA ALA GLY VAL ARG THR ILE VAL ASP VAL SER THR PHE SEQRES 7 A 339 ASP ALA GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SER SEQRES 8 A 339 ARG ALA ALA ASP VAL HIS ILE VAL ALA ALA THR GLY LEU SEQRES 9 A 339 TRP GLU ASP PRO PRO LEU SER MET ARG LEU ARG SER VAL SEQRES 10 A 339 GLU GLU LEU THR GLN PHE PHE LEU ARG GLU ILE GLN TYR SEQRES 11 A 339 GLY ILE GLU ASP THR GLY ILE ARG ALA GLY ILE ILE LYS SEQRES 12 A 339 VAL ALA THR GLN GLY LYS ALA THR PRO PHE GLN GLU LEU SEQRES 13 A 339 VAL LEU ARG ALA ALA ALA ARG ALA SER LEU ALA THR GLY SEQRES 14 A 339 VAL PRO VAL THR THR HIS THR PHE ALA SER GLN ARG ASP SEQRES 15 A 339 GLY GLU GLN GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SEQRES 16 A 339 SER PRO SER ARG VAL CYS ILE GLY HIS SER ASP ASP THR SEQRES 17 A 339 ASP ASP LEU SER TYR LEU THR ALA LEU ALA ALA ARG GLY SEQRES 18 A 339 TYR LEU ILE GLY LEU ASP GLY ILE PRO HIS SER ALA ILE SEQRES 19 A 339 GLY LEU GLU ASP ASN ALA SER ALA SER ALA LEU LEU GLY SEQRES 20 A 339 ASN ARG SER TRP GLN THR ARG ALA LEU LEU ILE LYS ALA SEQRES 21 A 339 LEU ILE ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SER SEQRES 22 A 339 ASN ASP TRP LEU PHE GLY PHE SER SER TYR VAL THR ASN SEQRES 23 A 339 ILE MET ASP VAL MET ASP SER VAL ASN PRO ASP GLY MET SEQRES 24 A 339 ALA PHE ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU SEQRES 25 A 339 LYS GLY VAL PRO GLN GLU THR LEU ALA GLY ILE THR VAL SEQRES 26 A 339 THR ASN PRO ALA ARG PHE LEU SER PRO THR LEU ARG ALA SEQRES 27 A 339 SER SEQRES 1 B 339 ILE SER GLU PHE THR ASN SER GLY ASP ARG ILE ASN THR SEQRES 2 B 339 VAL ARG GLY PRO ILE THR ILE SER GLU ALA GLY PHE THR SEQRES 3 B 339 LEU THR HIS GLU HIS ILE CYS GLY SER SER ALA GLY PHE SEQRES 4 B 339 LEU ARG ALA TRP PRO GLU PHE PHE GLY SER ARG ALA ALA SEQRES 5 B 339 LEU VAL GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG SEQRES 6 B 339 ALA ALA GLY VAL ARG THR ILE VAL ASP VAL SER THR PHE SEQRES 7 B 339 ASP ALA GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SER SEQRES 8 B 339 ARG ALA ALA ASP VAL HIS ILE VAL ALA ALA THR GLY LEU SEQRES 9 B 339 TRP GLU ASP PRO PRO LEU SER MET ARG LEU ARG SER VAL SEQRES 10 B 339 GLU GLU LEU THR GLN PHE PHE LEU ARG GLU ILE GLN TYR SEQRES 11 B 339 GLY ILE GLU ASP THR GLY ILE ARG ALA GLY ILE ILE LYS SEQRES 12 B 339 VAL ALA THR GLN GLY LYS ALA THR PRO PHE GLN GLU LEU SEQRES 13 B 339 VAL LEU ARG ALA ALA ALA ARG ALA SER LEU ALA THR GLY SEQRES 14 B 339 VAL PRO VAL THR THR HIS THR PHE ALA SER GLN ARG ASP SEQRES 15 B 339 GLY GLU GLN GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SEQRES 16 B 339 SER PRO SER ARG VAL CYS ILE GLY HIS SER ASP ASP THR SEQRES 17 B 339 ASP ASP LEU SER TYR LEU THR ALA LEU ALA ALA ARG GLY SEQRES 18 B 339 TYR LEU ILE GLY LEU ASP GLY ILE PRO HIS SER ALA ILE SEQRES 19 B 339 GLY LEU GLU ASP ASN ALA SER ALA SER ALA LEU LEU GLY SEQRES 20 B 339 ASN ARG SER TRP GLN THR ARG ALA LEU LEU ILE LYS ALA SEQRES 21 B 339 LEU ILE ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SER SEQRES 22 B 339 ASN ASP TRP LEU PHE GLY PHE SER SER TYR VAL THR ASN SEQRES 23 B 339 ILE MET ASP VAL MET ASP SER VAL ASN PRO ASP GLY MET SEQRES 24 B 339 ALA PHE ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU SEQRES 25 B 339 LYS GLY VAL PRO GLN GLU THR LEU ALA GLY ILE THR VAL SEQRES 26 B 339 THR ASN PRO ALA ARG PHE LEU SER PRO THR LEU ARG ALA SEQRES 27 B 339 SER HET FMT A 401 3 HET ZN A 402 1 HET ZN A 403 1 HET D6K A 404 10 HET TRS A 405 8 HET EDO A 406 4 HET EDO A 407 4 HET EDO B1001 4 HET EDO B1002 4 HET FMT B1003 3 HET ZN B1004 1 HET ZN B1005 1 HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETNAM D6K (4~{S},6~{R})-2,2,6-TRIMETHYL-1,3-DIOXAN-4-OL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FMT 2(C H2 O2) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 D6K C7 H14 O3 FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 EDO 4(C2 H6 O2) FORMUL 15 HOH *655(H2 O) HELIX 1 AA1 SER A 47 ALA A 49 5 3 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 PHE A 203 GLN A 206 5 4 HELIX 11 AB2 ARG A 207 GLU A 219 1 13 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 ASN A 265 GLY A 273 1 9 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 LYS A 339 1 14 HELIX 21 AC3 PRO A 342 VAL A 351 1 10 HELIX 22 AC4 VAL A 351 SER A 359 1 9 HELIX 23 AC5 SER B 47 ALA B 49 5 3 HELIX 24 AC6 GLY B 64 TRP B 69 1 6 HELIX 25 AC7 PRO B 70 GLY B 74 5 5 HELIX 26 AC8 SER B 75 ALA B 93 1 19 HELIX 27 AC9 THR B 103 GLY B 107 5 5 HELIX 28 AD1 ASP B 109 ASP B 121 1 13 HELIX 29 AD2 PRO B 135 LEU B 140 1 6 HELIX 30 AD3 SER B 142 TYR B 156 1 15 HELIX 31 AD4 THR B 177 GLY B 195 1 19 HELIX 32 AD5 PHE B 203 GLN B 206 5 4 HELIX 33 AD6 ARG B 207 GLU B 219 1 13 HELIX 34 AD7 SER B 222 SER B 224 5 3 HELIX 35 AD8 HIS B 230 THR B 234 5 5 HELIX 36 AD9 ASP B 236 ARG B 246 1 11 HELIX 37 AE1 ASN B 265 GLY B 273 1 9 HELIX 38 AE2 SER B 276 GLN B 290 1 15 HELIX 39 AE3 TYR B 292 LYS B 294 5 3 HELIX 40 AE4 ASN B 312 ASN B 321 1 10 HELIX 41 AE5 ASP B 323 MET B 325 5 3 HELIX 42 AE6 ALA B 326 LYS B 339 1 14 HELIX 43 AE7 PRO B 342 VAL B 351 1 10 HELIX 44 AE8 VAL B 351 SER B 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 GLY A 129 0 SHEET 2 AA4 6 ILE A 167 ALA A 171 1 O LYS A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ARG B 36 THR B 39 0 SHEET 2 AA5 2 GLY B 42 THR B 45 -1 O ILE B 44 N ILE B 37 SHEET 1 AA6 3 THR B 52 GLU B 56 0 SHEET 2 AA6 3 THR B 97 ASP B 100 1 O VAL B 99 N LEU B 53 SHEET 3 AA6 3 HIS B 123 VAL B 125 1 O VAL B 125 N ASP B 100 SHEET 1 AA7 2 CYS B 59 GLY B 60 0 SHEET 2 AA7 2 GLY B 305 PHE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 AA8 6 ALA B 127 GLY B 129 0 SHEET 2 AA8 6 ILE B 167 ALA B 171 1 O LYS B 169 N THR B 128 SHEET 3 AA8 6 VAL B 198 HIS B 201 1 O THR B 199 N ILE B 168 SHEET 4 AA8 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 AA8 6 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 6 AA8 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK NZ LYS B 169 C FMT B1003 1555 1555 1.59 LINK NE2 HIS A 55 ZN ZN A 402 1555 1555 2.13 LINK NE2 HIS A 57 ZN ZN A 402 1555 1555 2.01 LINK ND1 HIS A 201 ZN ZN A 403 1555 1555 2.15 LINK NE2 HIS A 230 ZN ZN A 403 1555 1555 2.03 LINK OD1 ASP A 301 ZN ZN A 402 1555 1555 2.26 LINK O1 FMT A 401 ZN ZN A 402 1555 1555 2.15 LINK O2 FMT A 401 ZN ZN A 403 1555 1555 1.95 LINK ZN ZN A 402 OAF D6K A 404 1555 1555 1.84 LINK ZN ZN A 403 O HOH A 501 1555 1555 2.24 LINK NE2 HIS B 55 ZN ZN B1004 1555 1555 2.15 LINK NE2 HIS B 57 ZN ZN B1004 1555 1555 2.04 LINK ND1 HIS B 201 ZN ZN B1005 1555 1555 2.11 LINK NE2 HIS B 230 ZN ZN B1005 1555 1555 2.03 LINK OD1 ASP B 301 ZN ZN B1004 1555 1555 2.35 LINK O2 FMT B1003 ZN ZN B1004 1555 1555 2.16 LINK O1 FMT B1003 ZN ZN B1005 1555 1555 1.98 LINK ZN ZN B1005 O HOH B1323 1555 1555 2.13 SITE 1 AC1 9 HIS A 55 HIS A 57 TRP A 131 LYS A 169 SITE 2 AC1 9 HIS A 201 HIS A 230 ZN A 402 ZN A 403 SITE 3 AC1 9 D6K A 404 SITE 1 AC2 5 HIS A 55 HIS A 57 ASP A 301 FMT A 401 SITE 2 AC2 5 D6K A 404 SITE 1 AC3 5 HIS A 201 HIS A 230 FMT A 401 D6K A 404 SITE 2 AC3 5 HOH A 501 SITE 1 AC4 10 HIS A 55 HIS A 57 TRP A 131 ASP A 301 SITE 2 AC4 10 PHE A 306 FMT A 401 ZN A 402 ZN A 403 SITE 3 AC4 10 TRS A 405 HOH A 501 SITE 1 AC5 4 ASP A 233 HIS A 257 LEU A 271 D6K A 404 SITE 1 AC6 5 GLU A 181 ARG A 185 ILE A 215 EDO A 407 SITE 2 AC6 5 HOH A 511 SITE 1 AC7 6 GLU A 181 LEU A 182 ARG A 185 EDO A 406 SITE 2 AC7 6 HOH A 548 HOH A 732 SITE 1 AC8 5 ALA B 77 VAL B 80 GLU B 115 HOH B1123 SITE 2 AC8 5 HOH B1337 SITE 1 AC9 5 PRO B 342 THR B 345 HOH B1211 HOH B1238 SITE 2 AC9 5 HOH B1296 SITE 1 AD1 4 HIS B 55 HIS B 57 ASP B 301 FMT B1003 SITE 1 AD2 4 HIS B 201 HIS B 230 FMT B1003 HOH B1323 SITE 1 AD3 14 HIS B 55 HIS B 57 VAL B 101 THR B 103 SITE 2 AD3 14 THR B 128 GLY B 129 LEU B 130 ILE B 168 SITE 3 AD3 14 VAL B 170 THR B 199 HIS B 201 HIS B 230 SITE 4 AD3 14 ZN B1004 ZN B1005 CRYST1 54.780 81.510 70.690 90.00 94.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018255 0.000000 0.001571 0.00000 SCALE2 0.000000 0.012268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014199 0.00000