HEADER TRANSFERASE 11-JAN-18 6FGX TITLE CRYSTAL STRUCTURE OF THE SMALL ALARMONE SYNTHETHASE 2 FROM TITLE 2 STAPHYLOCOCCUS AUREUS BOUND TO AMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GTP PYROPHOSPHOKINASE YWAC,RELA/SPOT DOMAIN PROTEIN; COMPND 5 EC: 2.7.6.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: YWAC, AB454_12730, AB466_12625, AB478_12605, AB526_12980, SOURCE 5 AFO97_10970, AFP37_10975, EP54_00695, EQ90_03295, ERS072738_01254, SOURCE 6 ERS074020_00750, HMPREF3211_00175; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STRINGENT RESPONSE, ALARMONE, SAS2, RELP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BANGE,M.VOGT,W.STEINCHEN,F.ALTEGOER REVDAT 3 17-JAN-24 6FGX 1 LINK REVDAT 2 14-FEB-18 6FGX 1 JRNL REVDAT 1 07-FEB-18 6FGX 0 JRNL AUTH W.STEINCHEN,M.S.VOGT,F.ALTEGOER,P.I.GIAMMARINARO,P.HORVATEK, JRNL AUTH 2 C.WOLZ,G.BANGE JRNL TITL STRUCTURAL AND MECHANISTIC DIVERGENCE OF THE SMALL (P)PPGPP JRNL TITL 2 SYNTHETASES RELP AND RELQ. JRNL REF SCI REP V. 8 2195 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29391580 JRNL DOI 10.1038/S41598-018-20634-4 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FGJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M LITHIUM REMARK 280 SULFATE AND 30%, PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 62.93100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.93950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.46975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.93100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 163.40925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 163.40925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.93100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.46975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 62.93100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.93950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.93100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.93950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.93100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 163.40925 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 54.46975 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.93100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 54.46975 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 163.40925 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.93100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.93100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.93950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 188.79300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.46975 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 TYR A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 TYR A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 ARG A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 PHE A 18 REMARK 465 LYS A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 PHE A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 GLY A 28 REMARK 465 ASP A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 LYS A 195 REMARK 465 ASN A 196 REMARK 465 ASN A 197 REMARK 465 GLU A 230 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 TYR B 2 REMARK 465 VAL B 3 REMARK 465 ASP B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 SER B 8 REMARK 465 LEU B 9 REMARK 465 TYR B 10 REMARK 465 LEU B 11 REMARK 465 GLU B 12 REMARK 465 ASP B 13 REMARK 465 LEU B 14 REMARK 465 ARG B 15 REMARK 465 HIS B 16 REMARK 465 ASP B 17 REMARK 465 PHE B 18 REMARK 465 LYS B 19 REMARK 465 ASN B 20 REMARK 465 SER B 21 REMARK 465 LEU B 22 REMARK 465 SER B 23 REMARK 465 LYS B 24 REMARK 465 PHE B 25 REMARK 465 GLU B 26 REMARK 465 ASN B 27 REMARK 465 GLY B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 ALA B 31 REMARK 465 PHE B 32 REMARK 465 TYR B 194 REMARK 465 LYS B 195 REMARK 465 ASN B 196 REMARK 465 ASN B 197 REMARK 465 GLU B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 192 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 130 O ALA B 165 6565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 83 CG - CD - NE ANGL. DEV. = 16.0 DEGREES REMARK 500 LEU B 206 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 LEU B 206 CB - CG - CD1 ANGL. DEV. = -21.5 DEGREES REMARK 500 LEU B 206 CB - CG - CD2 ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 153 149.45 -178.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 APC A 302 O2G 92.1 REMARK 620 3 APC A 302 O3B 82.7 56.0 REMARK 620 4 HOH A 408 O 79.3 135.4 79.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 107 OD2 REMARK 620 2 APC B 302 O3B 89.4 REMARK 620 3 APC B 302 O2G 74.5 56.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FGJ RELATED DB: PDB REMARK 900 6FGJ CONTAINS THE APO STRUCTURE OF STAPHYLOCOCCUS RELP DBREF 6FGX A 2 230 UNP W8U368 W8U368_STAAU 2 230 DBREF 6FGX B 2 230 UNP W8U368 W8U368_STAAU 2 230 SEQADV 6FGX MET A -6 UNP W8U368 INITIATING METHIONINE SEQADV 6FGX GLY A -5 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS A -4 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS A -3 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS A -2 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS A -1 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS A 0 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS A 1 UNP W8U368 EXPRESSION TAG SEQADV 6FGX MET B -6 UNP W8U368 INITIATING METHIONINE SEQADV 6FGX GLY B -5 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS B -4 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS B -3 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS B -2 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS B -1 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS B 0 UNP W8U368 EXPRESSION TAG SEQADV 6FGX HIS B 1 UNP W8U368 EXPRESSION TAG SEQRES 1 A 237 MET GLY HIS HIS HIS HIS HIS HIS TYR VAL ASP ARG LYS SEQRES 2 A 237 PRO SER LEU TYR LEU GLU ASP LEU ARG HIS ASP PHE LYS SEQRES 3 A 237 ASN SER LEU SER LYS PHE GLU ASN GLY ASP GLU ALA PHE SEQRES 4 A 237 ASP THR LEU LEU GLY PHE VAL GLU LEU ASP HIS ILE TYR SEQRES 5 A 237 SER SER ALA LEU LYS GLU ILE SER THR LYS LEU SER ILE SEQRES 6 A 237 LEU ASP ASP ASN PHE ASN HIS ILE TYR LYS HIS ASN PRO SEQRES 7 A 237 ILE HIS HIS MET GLU ARG ARG VAL LYS GLU MET ARG SER SEQRES 8 A 237 LEU ILE GLU LYS LEU ASN ARG LYS GLY LEU GLN ILE SER SEQRES 9 A 237 ALA GLU THR ALA LYS GLU HIS ILE LEU ASP ILE ALA GLY SEQRES 10 A 237 ILE ARG VAL VAL CYS ASN TYR LEU ASP ASP ILE TYR LEU SEQRES 11 A 237 ILE GLU GLU MET LEU LEU LYS GLN GLU ASP VAL GLN LEU SEQRES 12 A 237 ILE LYS ARG LYS ASP TYR ILE GLN HIS PRO LYS GLU ASN SEQRES 13 A 237 GLY TYR ARG SER LEU HIS ILE VAL VAL SER ILE PRO VAL SEQRES 14 A 237 PHE LEU ALA GLU ARG VAL GLU VAL LEU PRO VAL GLU ILE SEQRES 15 A 237 GLN ILE ARG THR ILE GLY MET ASP MET TRP ALA SER LEU SEQRES 16 A 237 GLU HIS LYS ILE ARG TYR LYS ASN ASN ALA GLU THR GLU SEQRES 17 A 237 LYS TYR ARG ASP LEU LEU LYS GLU CYS ALA THR GLU ILE SEQRES 18 A 237 THR GLU VAL GLU ASP LYS LEU GLN GLN ILE HIS SER GLU SEQRES 19 A 237 ILE THR GLU SEQRES 1 B 237 MET GLY HIS HIS HIS HIS HIS HIS TYR VAL ASP ARG LYS SEQRES 2 B 237 PRO SER LEU TYR LEU GLU ASP LEU ARG HIS ASP PHE LYS SEQRES 3 B 237 ASN SER LEU SER LYS PHE GLU ASN GLY ASP GLU ALA PHE SEQRES 4 B 237 ASP THR LEU LEU GLY PHE VAL GLU LEU ASP HIS ILE TYR SEQRES 5 B 237 SER SER ALA LEU LYS GLU ILE SER THR LYS LEU SER ILE SEQRES 6 B 237 LEU ASP ASP ASN PHE ASN HIS ILE TYR LYS HIS ASN PRO SEQRES 7 B 237 ILE HIS HIS MET GLU ARG ARG VAL LYS GLU MET ARG SER SEQRES 8 B 237 LEU ILE GLU LYS LEU ASN ARG LYS GLY LEU GLN ILE SER SEQRES 9 B 237 ALA GLU THR ALA LYS GLU HIS ILE LEU ASP ILE ALA GLY SEQRES 10 B 237 ILE ARG VAL VAL CYS ASN TYR LEU ASP ASP ILE TYR LEU SEQRES 11 B 237 ILE GLU GLU MET LEU LEU LYS GLN GLU ASP VAL GLN LEU SEQRES 12 B 237 ILE LYS ARG LYS ASP TYR ILE GLN HIS PRO LYS GLU ASN SEQRES 13 B 237 GLY TYR ARG SER LEU HIS ILE VAL VAL SER ILE PRO VAL SEQRES 14 B 237 PHE LEU ALA GLU ARG VAL GLU VAL LEU PRO VAL GLU ILE SEQRES 15 B 237 GLN ILE ARG THR ILE GLY MET ASP MET TRP ALA SER LEU SEQRES 16 B 237 GLU HIS LYS ILE ARG TYR LYS ASN ASN ALA GLU THR GLU SEQRES 17 B 237 LYS TYR ARG ASP LEU LEU LYS GLU CYS ALA THR GLU ILE SEQRES 18 B 237 THR GLU VAL GLU ASP LYS LEU GLN GLN ILE HIS SER GLU SEQRES 19 B 237 ILE THR GLU HET MG A 301 1 HET APC A 302 31 HET MG B 301 1 HET APC B 302 31 HETNAM MG MAGNESIUM ION HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 APC 2(C11 H18 N5 O12 P3) FORMUL 7 HOH *30(H2 O) HELIX 1 AA1 PHE A 32 LYS A 68 1 37 HELIX 2 AA2 GLU A 81 LYS A 92 1 12 HELIX 3 AA3 SER A 97 ILE A 105 1 9 HELIX 4 AA4 TYR A 117 LYS A 130 1 14 HELIX 5 AA5 ILE A 180 LYS A 191 1 12 HELIX 6 AA6 GLU A 199 THR A 229 1 31 HELIX 7 AA7 THR B 34 LYS B 68 1 35 HELIX 8 AA8 GLU B 81 LYS B 92 1 12 HELIX 9 AA9 SER B 97 ILE B 105 1 9 HELIX 10 AB1 TYR B 117 LYS B 130 1 14 HELIX 11 AB2 ILE B 180 LYS B 191 1 12 HELIX 12 AB3 GLU B 199 THR B 229 1 31 SHEET 1 AA1 5 ILE A 72 VAL A 79 0 SHEET 2 AA1 5 ALA A 109 CYS A 115 -1 O VAL A 114 N HIS A 73 SHEET 3 AA1 5 VAL A 168 THR A 179 1 O ARG A 178 N CYS A 115 SHEET 4 AA1 5 LEU A 154 PHE A 163 -1 N ILE A 156 O ILE A 175 SHEET 5 AA1 5 GLN A 135 ASP A 141 -1 N ILE A 137 O VAL A 157 SHEET 1 AA2 5 ILE B 72 VAL B 79 0 SHEET 2 AA2 5 ALA B 109 CYS B 115 -1 O VAL B 114 N HIS B 73 SHEET 3 AA2 5 VAL B 168 THR B 179 1 O ARG B 178 N CYS B 115 SHEET 4 AA2 5 LEU B 154 PHE B 163 -1 N ILE B 156 O ILE B 175 SHEET 5 AA2 5 GLN B 135 ASP B 141 -1 N ILE B 137 O VAL B 157 LINK OD2 ASP A 107 MG MG A 301 1555 1555 2.28 LINK MG MG A 301 O2G APC A 302 1555 1555 2.91 LINK MG MG A 301 O3B APC A 302 1555 1555 2.64 LINK MG MG A 301 O HOH A 408 1555 1555 2.09 LINK OD2 ASP B 107 MG MG B 301 1555 1555 2.41 LINK MG MG B 301 O3B APC B 302 1555 1555 2.81 LINK MG MG B 301 O2G APC B 302 1555 1555 2.72 SITE 1 AC1 5 LYS A 88 ASP A 107 GLU A 174 APC A 302 SITE 2 AC1 5 HOH A 408 SITE 1 AC2 14 GLU A 76 ARG A 78 LYS A 80 SER A 84 SITE 2 AC2 14 LYS A 88 ARG A 91 ASP A 107 GLY A 110 SITE 3 AC2 14 ILE A 111 ARG A 112 GLU A 174 GLN A 176 SITE 4 AC2 14 MG A 301 HOH A 408 SITE 1 AC3 3 ASP B 107 GLU B 174 APC B 302 SITE 1 AC4 13 GLU B 76 ARG B 78 LYS B 80 SER B 84 SITE 2 AC4 13 LYS B 88 ASP B 107 GLY B 110 ILE B 111 SITE 3 AC4 13 ARG B 112 GLU B 174 GLN B 176 HIS B 190 SITE 4 AC4 13 MG B 301 CRYST1 125.862 125.862 217.879 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004590 0.00000