HEADER TRANSCRIPTION 15-JAN-18 6FHQ TITLE CRYSTAL STRUCTURE OF HUMAN BAZ2B PHD ZINC FINGER IN COMPLEX WITH FR 21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HWALP4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2B, KIAA1476; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSCRIPTION, PHD, ZINC FINGER, BAZ2B, BAZ2A, BROMODOMAIN, FRAGMENT, KEYWDS 2 COMPETITION, EPIGENETIC EXPDTA X-RAY DIFFRACTION AUTHOR A.AMATO,X.LUCAS,A.BORTOLUZZI,D.WRIGHT,A.CIULLI REVDAT 4 17-JAN-24 6FHQ 1 REMARK REVDAT 3 02-MAY-18 6FHQ 1 JRNL REVDAT 2 28-MAR-18 6FHQ 1 JRNL REVDAT 1 21-MAR-18 6FHQ 0 JRNL AUTH A.AMATO,X.LUCAS,A.BORTOLUZZI,D.WRIGHT,A.CIULLI JRNL TITL TARGETING LIGANDABLE POCKETS ON PLANT HOMEODOMAIN (PHD) ZINC JRNL TITL 2 FINGER DOMAINS BY A FRAGMENT-BASED APPROACH. JRNL REF ACS CHEM. BIOL. V. 13 915 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29529862 JRNL DOI 10.1021/ACSCHEMBIO.7B01093 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 8019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 410 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.48000 REMARK 3 B22 (A**2) : 2.17000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.545 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 929 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 841 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1248 ; 1.880 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1945 ; 0.859 ; 3.019 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 115 ; 7.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ;42.245 ;23.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 157 ;14.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;18.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 134 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1001 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 178 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 462 ; 2.021 ; 2.165 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 461 ; 2.009 ; 2.163 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 574 ; 2.905 ; 3.220 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 575 ; 2.904 ; 3.221 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 467 ; 3.188 ; 2.549 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 468 ; 3.186 ; 2.551 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 674 ; 4.443 ; 3.684 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1003 ; 7.278 ;26.481 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1003 ; 7.286 ;26.485 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1927 A 1983 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6199 6.1455 11.2287 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.2130 REMARK 3 T33: 0.0192 T12: 0.0359 REMARK 3 T13: -0.0063 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 1.6306 L22: 1.5886 REMARK 3 L33: 1.4129 L12: -1.4806 REMARK 3 L13: -1.4862 L23: 1.2391 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.1142 S13: 0.0907 REMARK 3 S21: 0.0539 S22: 0.0636 S23: -0.0654 REMARK 3 S31: -0.0841 S32: -0.2093 S33: -0.1101 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1927 B 1983 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0579 -3.2022 4.5319 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.1103 REMARK 3 T33: 0.0586 T12: 0.0048 REMARK 3 T13: 0.0389 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 4.4552 L22: 0.0756 REMARK 3 L33: 1.2035 L12: -0.5761 REMARK 3 L13: -1.7886 L23: 0.2497 REMARK 3 S TENSOR REMARK 3 S11: -0.1865 S12: 0.0628 S13: -0.2534 REMARK 3 S21: 0.0201 S22: -0.0164 S23: 0.0343 REMARK 3 S31: 0.0642 S32: -0.0232 S33: 0.2029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 65.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4QF3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 - 2.4 M SODIUM/ POTASSIUM REMARK 280 PHOSPHATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.16950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.51950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.68450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.51950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.16950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.68450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A1926 CG ND1 CD2 CE1 NE2 REMARK 470 MET A1930 CG SD CE REMARK 470 HIS B1926 N CA CB CG ND1 CD2 CE1 REMARK 470 HIS B1926 NE2 REMARK 470 MET B1927 CG SD CE REMARK 470 LYS B1981 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2101 O HOH A 2111 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2124 O HOH B 2108 3755 2.07 REMARK 500 OD2 ASP A 1970 OH TYR B 1933 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1953 11.82 57.23 REMARK 500 ARG B1938 19.65 58.42 REMARK 500 ASP B1953 7.78 56.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1934 SG REMARK 620 2 CYS A1937 SG 106.8 REMARK 620 3 HIS A1957 ND1 104.6 100.2 REMARK 620 4 CYS A1960 SG 113.6 113.7 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1949 SG REMARK 620 2 CYS A1952 SG 105.4 REMARK 620 3 CYS A1975 SG 110.4 113.6 REMARK 620 4 CYS A1978 SG 107.5 109.9 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1934 SG REMARK 620 2 CYS B1937 SG 109.6 REMARK 620 3 HIS B1957 ND1 104.0 98.6 REMARK 620 4 CYS B1960 SG 115.6 114.0 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1949 SG REMARK 620 2 CYS B1952 SG 105.0 REMARK 620 3 CYS B1975 SG 107.4 112.7 REMARK 620 4 CYS B1978 SG 112.0 108.4 111.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DE5 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 2002 DBREF 6FHQ A 1928 1983 UNP Q9UIF8 BAZ2B_HUMAN 1928 1983 DBREF 6FHQ B 1928 1983 UNP Q9UIF8 BAZ2B_HUMAN 1928 1983 SEQADV 6FHQ HIS A 1926 UNP Q9UIF8 EXPRESSION TAG SEQADV 6FHQ MET A 1927 UNP Q9UIF8 EXPRESSION TAG SEQADV 6FHQ HIS B 1926 UNP Q9UIF8 EXPRESSION TAG SEQADV 6FHQ MET B 1927 UNP Q9UIF8 EXPRESSION TAG SEQRES 1 A 58 HIS MET SER ILE MET LYS VAL TYR CYS GLN ILE CYS ARG SEQRES 2 A 58 LYS GLY ASP ASN GLU GLU LEU LEU LEU LEU CYS ASP GLY SEQRES 3 A 58 CYS ASP LYS GLY CYS HIS THR TYR CYS HIS ARG PRO LYS SEQRES 4 A 58 ILE THR THR ILE PRO ASP GLY ASP TRP PHE CYS PRO ALA SEQRES 5 A 58 CYS ILE ALA LYS ALA SER SEQRES 1 B 58 HIS MET SER ILE MET LYS VAL TYR CYS GLN ILE CYS ARG SEQRES 2 B 58 LYS GLY ASP ASN GLU GLU LEU LEU LEU LEU CYS ASP GLY SEQRES 3 B 58 CYS ASP LYS GLY CYS HIS THR TYR CYS HIS ARG PRO LYS SEQRES 4 B 58 ILE THR THR ILE PRO ASP GLY ASP TRP PHE CYS PRO ALA SEQRES 5 B 58 CYS ILE ALA LYS ALA SER HET ZN A2001 1 HET ZN A2002 1 HET DE5 A2003 10 HET ZN B2001 1 HET ZN B2002 1 HETNAM ZN ZINC ION HETNAM DE5 2-AZANYL-~{N}-(1,3-THIAZOL-2-YL)ETHANAMIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 DE5 C5 H7 N3 O S FORMUL 8 HOH *64(H2 O) HELIX 1 AA1 ASN A 1942 GLU A 1944 5 3 HELIX 2 AA2 CYS A 1975 SER A 1983 1 9 HELIX 3 AA3 ASN B 1942 GLU B 1944 5 3 HELIX 4 AA4 TYR B 1959 HIS B 1961 5 3 HELIX 5 AA5 CYS B 1975 SER B 1983 1 9 SHEET 1 AA1 2 LEU A1946 LEU A1948 0 SHEET 2 AA1 2 GLY A1955 HIS A1957 -1 O CYS A1956 N LEU A1947 SHEET 1 AA2 2 LEU B1946 LEU B1948 0 SHEET 2 AA2 2 GLY B1955 HIS B1957 -1 O CYS B1956 N LEU B1947 LINK SG CYS A1934 ZN ZN A2001 1555 1555 2.29 LINK SG CYS A1937 ZN ZN A2001 1555 1555 2.33 LINK SG CYS A1949 ZN ZN A2002 1555 1555 2.36 LINK SG CYS A1952 ZN ZN A2002 1555 1555 2.31 LINK ND1 HIS A1957 ZN ZN A2001 1555 1555 1.97 LINK SG CYS A1960 ZN ZN A2001 1555 1555 2.31 LINK SG CYS A1975 ZN ZN A2002 1555 1555 2.35 LINK SG CYS A1978 ZN ZN A2002 1555 1555 2.37 LINK SG CYS B1934 ZN ZN B2001 1555 1555 2.27 LINK SG CYS B1937 ZN ZN B2001 1555 1555 2.32 LINK SG CYS B1949 ZN ZN B2002 1555 1555 2.25 LINK SG CYS B1952 ZN ZN B2002 1555 1555 2.35 LINK ND1 HIS B1957 ZN ZN B2001 1555 1555 2.06 LINK SG CYS B1960 ZN ZN B2001 1555 1555 2.29 LINK SG CYS B1975 ZN ZN B2002 1555 1555 2.35 LINK SG CYS B1978 ZN ZN B2002 1555 1555 2.29 CISPEP 1 ARG A 1962 PRO A 1963 0 0.11 CISPEP 2 ARG B 1962 PRO B 1963 0 -17.94 SITE 1 AC1 4 CYS A1934 CYS A1937 HIS A1957 CYS A1960 SITE 1 AC2 4 CYS A1949 CYS A1952 CYS A1975 CYS A1978 SITE 1 AC3 8 GLU A1944 LEU A1946 LEU A1948 ASP A1950 SITE 2 AC3 8 ILE A1968 GLY A1971 TRP A1973 LYS B1939 SITE 1 AC4 4 CYS B1934 CYS B1937 HIS B1957 CYS B1960 SITE 1 AC5 4 CYS B1949 CYS B1952 CYS B1975 CYS B1978 CRYST1 38.339 45.369 65.039 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015375 0.00000