HEADER HYDROLASE 19-JAN-18 6FJ4 TITLE STRUCTURE OF FAE SOLVED BY SAD FROM DATA COLLECTED AT THE PEAK OF THE TITLE 2 SELENIUM ABSORPTION EDGE ON ID30B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE Y; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: XYLANASE Y,1,4-BETA-D-XYLAN XYLANOHYDROLASE Y,XYLY; COMPND 5 EC: 3.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_COMMON: RUMINICLOSTRIDIUM THERMOCELLUM; SOURCE 4 ORGANISM_TAXID: 1515; SOURCE 5 GENE: XYNY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.MCCARTHY,C.MUELLER-DIECKMANN REVDAT 3 08-AUG-18 6FJ4 1 JRNL REVDAT 2 18-JUL-18 6FJ4 1 JRNL REVDAT 1 07-FEB-18 6FJ4 0 JRNL AUTH A.A.MCCARTHY,R.BARRETT,A.BETEVA,H.CASEROTTO,F.DOBIAS, JRNL AUTH 2 F.FELISAZ,T.GIRAUD,M.GUIJARRO,R.JANOCHA,A.KHADROUCHE, JRNL AUTH 3 M.LENTINI,G.A.LEONARD,M.LOPEZ MARRERO,S.MALBET-MONACO, JRNL AUTH 4 S.MCSWEENEY,D.NURIZZO,G.PAPP,C.ROSSI,J.SINOIR,C.SOREZ, JRNL AUTH 5 J.SURR,O.SVENSSON,U.ZANDER,F.CIPRIANI,P.THEVENEAU, JRNL AUTH 6 C.MUELLER-DIECKMANN JRNL TITL ID30B - A VERSATILE BEAMLINE FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY EXPERIMENTS AT THE ESRF. JRNL REF J SYNCHROTRON RADIAT V. 25 1249 2018 JRNL REFN ESSN 1600-5775 JRNL PMID 29979188 JRNL DOI 10.1107/S1600577518007166 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 43496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3195 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.498 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2440 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2040 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3292 ; 1.695 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4749 ; 1.026 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 5.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;36.890 ;23.858 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;11.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2750 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 554 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1141 ; 1.035 ; 1.905 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1140 ; 1.034 ; 1.905 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1427 ; 1.619 ; 2.851 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1428 ; 1.619 ; 2.851 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 2.067 ; 2.160 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1287 ; 1.917 ; 2.145 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1855 ; 2.510 ; 3.120 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2657 ; 5.209 ;23.071 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2622 ; 5.160 ;22.599 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : BE CRL (VERTICAL) AND RH REMARK 200 ELLIPTICAL MIRROR (HORIZONTAL) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46013 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 79.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 1.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 50 MM CDSO4, 5% (V/V) REMARK 280 GLYCEROL, AND 1 M NA-ACETATE, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.93250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.01150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.01150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.46625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.01150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.01150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.39875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.01150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.01150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.46625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.01150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.01150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.39875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.93250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 819 OE2 GLU A 892 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1368 O HOH A 1374 8664 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 894 CG GLU A 894 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 828 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLU A 894 OE1 - CD - OE2 ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 878 -49.84 -130.45 REMARK 500 SEP A 954 -118.55 65.43 REMARK 500 TYR A 983 89.88 -163.26 REMARK 500 THR A1040 149.65 176.60 REMARK 500 ASN A1047 16.04 -151.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 823 SG REMARK 620 2 HIS A 886 ND1 93.2 REMARK 620 3 GLU A1017 OE1 102.3 20.8 REMARK 620 4 GLU A1017 OE2 105.8 21.3 3.7 REMARK 620 5 HOH A1206 O 130.5 88.3 68.1 67.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1102 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 894 OE1 REMARK 620 2 GLU A 894 OE2 51.9 REMARK 620 3 HIS A1076 ND1 90.3 89.1 REMARK 620 4 GLU A1079 OE1 78.3 129.9 97.3 REMARK 620 5 GLU A1079 OE2 135.7 167.2 100.4 57.8 REMARK 620 6 HIS A1083 ND1 86.5 83.4 172.2 89.0 86.7 REMARK 620 7 HIS A1085 NE2 135.9 84.5 81.7 145.6 88.4 95.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1104 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 947 NE2 REMARK 620 2 HIS A1080 NE2 95.0 REMARK 620 3 HOH A1372 O 93.1 117.9 REMARK 620 4 HOH A1214 O 86.7 85.2 156.8 REMARK 620 5 HOH A1375 O 99.8 153.8 82.9 74.3 REMARK 620 6 HOH A1377 O 169.2 95.8 80.8 95.4 70.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1103 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1007 OE1 REMARK 620 2 GLU A1007 OE2 54.3 REMARK 620 3 HOH A1374 O 93.0 130.8 REMARK 620 4 HIS A1082 NE2 83.8 31.6 152.4 REMARK 620 5 HIS A1084 NE2 76.7 26.9 155.0 8.4 REMARK 620 6 HOH A1368 O 89.2 88.6 51.5 101.0 105.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1108 DBREF 6FJ4 A 803 1077 UNP P51584 XYNY_CLOTM 803 1077 SEQADV 6FJ4 GLU A 1017 UNP P51584 ASP 1017 CONFLICT SEQADV 6FJ4 ASP A 1018 UNP P51584 HIS 1018 CONFLICT SEQADV 6FJ4 LEU A 1078 UNP P51584 EXPRESSION TAG SEQADV 6FJ4 GLU A 1079 UNP P51584 EXPRESSION TAG SEQADV 6FJ4 HIS A 1080 UNP P51584 EXPRESSION TAG SEQADV 6FJ4 HIS A 1081 UNP P51584 EXPRESSION TAG SEQADV 6FJ4 HIS A 1082 UNP P51584 EXPRESSION TAG SEQADV 6FJ4 HIS A 1083 UNP P51584 EXPRESSION TAG SEQADV 6FJ4 HIS A 1084 UNP P51584 EXPRESSION TAG SEQADV 6FJ4 HIS A 1085 UNP P51584 EXPRESSION TAG SEQRES 1 A 283 SER PHE LYS TYR GLU SER ALA VAL GLN TYR ARG PRO ALA SEQRES 2 A 283 PRO ASP SER TYR LEU ASN PRO CYS PRO GLN ALA GLY ARG SEQRES 3 A 283 ILE VAL LYS GLU THR TYR THR GLY ILE ASN GLY THR LYS SEQRES 4 A 283 SER LEU ASN VAL TYR LEU PRO TYR GLY TYR ASP PRO ASN SEQRES 5 A 283 LYS LYS TYR ASN ILE PHE TYR LEU MSE HIS GLY GLY GLY SEQRES 6 A 283 GLU ASN GLU ASN THR ILE PHE SER ASN ASP VAL LYS LEU SEQRES 7 A 283 GLN ASN ILE LEU ASP HIS ALA ILE MSE ASN GLY GLU LEU SEQRES 8 A 283 GLU PRO LEU ILE VAL VAL THR PRO THR PHE ASN GLY GLY SEQRES 9 A 283 ASN CYS THR ALA GLN ASN PHE TYR GLN GLU PHE ARG GLN SEQRES 10 A 283 ASN VAL ILE PRO PHE VAL GLU SER LYS TYR SER THR TYR SEQRES 11 A 283 ALA GLU SER THR THR PRO GLN GLY ILE ALA ALA SER ARG SEQRES 12 A 283 MSE HIS ARG GLY PHE GLY GLY PHE SEP MSE GLY GLY LEU SEQRES 13 A 283 THR THR TRP TYR VAL MSE VAL ASN CYS LEU ASP TYR VAL SEQRES 14 A 283 ALA TYR PHE MSE PRO LEU SER GLY ASP TYR TRP TYR GLY SEQRES 15 A 283 ASN SER PRO GLN ASP LYS ALA ASN SER ILE ALA GLU ALA SEQRES 16 A 283 ILE ASN ARG SER GLY LEU SER LYS ARG GLU TYR PHE VAL SEQRES 17 A 283 PHE ALA ALA THR GLY SER GLU ASP ILE ALA TYR ALA ASN SEQRES 18 A 283 MSE ASN PRO GLN ILE GLU ALA MSE LYS ALA LEU PRO HIS SEQRES 19 A 283 PHE ASP TYR THR SER ASP PHE SER LYS GLY ASN PHE TYR SEQRES 20 A 283 PHE LEU VAL ALA PRO GLY ALA THR HIS TRP TRP GLY TYR SEQRES 21 A 283 VAL ARG HIS TYR ILE TYR ASP ALA LEU PRO TYR PHE PHE SEQRES 22 A 283 HIS GLU LEU GLU HIS HIS HIS HIS HIS HIS MODRES 6FJ4 MSE A 863 MET MODIFIED RESIDUE MODRES 6FJ4 MSE A 889 MET MODIFIED RESIDUE MODRES 6FJ4 MSE A 946 MET MODIFIED RESIDUE MODRES 6FJ4 SEP A 954 SER MODIFIED RESIDUE MODRES 6FJ4 MSE A 955 MET MODIFIED RESIDUE MODRES 6FJ4 MSE A 964 MET MODIFIED RESIDUE MODRES 6FJ4 MSE A 975 MET MODIFIED RESIDUE MODRES 6FJ4 MSE A 1024 MET MODIFIED RESIDUE MODRES 6FJ4 MSE A 1031 MET MODIFIED RESIDUE HET MSE A 863 8 HET MSE A 889 8 HET MSE A 946 8 HET SEP A 954 10 HET MSE A 955 13 HET MSE A 964 8 HET MSE A 975 8 HET MSE A1024 8 HET MSE A1031 8 HET CD A1101 1 HET CD A1102 1 HET CD A1103 1 HET CD A1104 1 HET CD A1105 1 HET GOL A1106 6 HET GOL A1107 6 HET SO4 A1108 5 HETNAM MSE SELENOMETHIONINE HETNAM SEP PHOSPHOSERINE HETNAM CD CADMIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 CD 5(CD 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *194(H2 O) HELIX 1 AA1 PRO A 816 ASN A 821 5 6 HELIX 2 AA2 LYS A 879 ASN A 890 1 12 HELIX 3 AA3 ASN A 912 ASN A 920 1 9 HELIX 4 AA4 ASN A 920 TYR A 929 1 10 HELIX 5 AA5 THR A 937 SER A 944 1 8 HELIX 6 AA6 SEP A 954 LEU A 968 1 15 HELIX 7 AA7 SER A 986 GLY A 1002 1 17 HELIX 8 AA8 ALA A 1020 ALA A 1033 1 14 HELIX 9 AA9 TRP A 1059 LEU A 1071 1 13 HELIX 10 AB1 PRO A 1072 PHE A 1074 5 3 SHEET 1 AA1 8 ARG A 828 GLY A 836 0 SHEET 2 AA1 8 GLY A 839 LEU A 847 -1 O LEU A 847 N ARG A 828 SHEET 3 AA1 8 ILE A 897 THR A 900 -1 O VAL A 898 N TYR A 846 SHEET 4 AA1 8 ILE A 859 MSE A 863 1 N LEU A 862 O VAL A 899 SHEET 5 AA1 8 ARG A 948 PHE A 953 1 O GLY A 951 N TYR A 861 SHEET 6 AA1 8 TYR A 973 LEU A 977 1 O LEU A 977 N GLY A 952 SHEET 7 AA1 8 PHE A1009 GLY A1015 1 O PHE A1011 N PHE A 974 SHEET 8 AA1 8 PHE A1048 ALA A1053 1 O TYR A1049 N ALA A1012 LINK SG CYS A 823 CD CD A1101 1555 1555 2.64 LINK C LEU A 862 N MSE A 863 1555 1555 1.35 LINK C MSE A 863 N HIS A 864 1555 1555 1.34 LINK ND1 HIS A 886 CD CD A1101 1555 1555 2.37 LINK C ILE A 888 N MSE A 889 1555 1555 1.34 LINK C MSE A 889 N ASN A 890 1555 1555 1.33 LINK OE1 GLU A 894 CD CD A1102 1555 1555 2.39 LINK OE2 GLU A 894 CD CD A1102 1555 1555 2.25 LINK C ARG A 945 N MSE A 946 1555 1555 1.35 LINK C MSE A 946 N HIS A 947 1555 1555 1.33 LINK NE2 HIS A 947 CD CD A1104 1555 1555 2.30 LINK C PHE A 953 N SEP A 954 1555 1555 1.34 LINK C SEP A 954 N MSE A 955 1555 1555 1.34 LINK C MSE A 955 N GLY A 956 1555 1555 1.34 LINK C VAL A 963 N MSE A 964 1555 1555 1.33 LINK C MSE A 964 N VAL A 965 1555 1555 1.32 LINK C PHE A 974 N MSE A 975 1555 1555 1.33 LINK C MSE A 975 N PRO A 976 1555 1555 1.35 LINK OE1 GLU A1007 CD CD A1103 1555 1555 2.33 LINK OE2 GLU A1007 CD CD A1103 1555 1555 2.27 LINK C ASN A1023 N MSE A1024 1555 1555 1.33 LINK C MSE A1024 N ASN A1025 1555 1555 1.34 LINK C ALA A1030 N MSE A1031 1555 1555 1.34 LINK C MSE A1031 N LYS A1032 1555 1555 1.34 LINK ND1 HIS A1076 CD CD A1102 1555 1555 2.38 LINK OE1 GLU A1079 CD CD A1102 1555 1555 2.20 LINK OE2 GLU A1079 CD CD A1102 1555 1555 2.28 LINK NE2 HIS A1080 CD CD A1104 1555 1555 2.23 LINK ND1 HIS A1081 CD CD A1105 1555 1555 2.25 LINK ND1 HIS A1083 CD CD A1102 1555 1555 2.36 LINK NE2 HIS A1085 CD CD A1102 1555 1555 2.28 LINK CD CD A1103 O HOH A1374 1555 1555 2.19 LINK CD CD A1104 O HOH A1372 1555 1555 2.17 LINK CD CD A1104 O HOH A1214 1555 1555 2.16 LINK CD CD A1104 O HOH A1375 1555 1555 2.11 LINK CD CD A1104 O HOH A1377 1555 1555 2.48 LINK OE1 GLU A1017 CD CD A1101 1555 3545 2.28 LINK OE2 GLU A1017 CD CD A1101 1555 3545 2.30 LINK NE2 HIS A1082 CD CD A1103 1555 8664 2.26 LINK NE2 HIS A1084 CD CD A1103 1555 8664 2.26 LINK CD CD A1101 O HOH A1206 1555 4554 2.19 LINK CD CD A1103 O HOH A1368 1555 8664 2.23 SITE 1 AC1 5 CYS A 823 HIS A 886 MSE A 889 GLU A1017 SITE 2 AC1 5 HOH A1206 SITE 1 AC2 5 GLU A 894 HIS A1076 GLU A1079 HIS A1083 SITE 2 AC2 5 HIS A1085 SITE 1 AC3 5 GLU A1007 HIS A1082 HIS A1084 HOH A1368 SITE 2 AC3 5 HOH A1374 SITE 1 AC4 6 HIS A 947 HIS A1080 HOH A1214 HOH A1372 SITE 2 AC4 6 HOH A1375 HOH A1377 SITE 1 AC5 3 HIS A1081 SO4 A1108 HOH A1279 SITE 1 AC6 8 ILE A 837 ASN A 838 ASN A 907 ASN A 912 SITE 2 AC6 8 GLN A 915 ARG A 918 ASN A 966 HOH A1204 SITE 1 AC7 6 GLU A 926 SER A 927 LYS A 928 TYR A 929 SITE 2 AC7 6 SER A 930 HOH A1208 SITE 1 AC8 3 LYS A 855 HIS A1081 CD A1105 CRYST1 112.023 112.023 65.865 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008927 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015183 0.00000