HEADER MEMBRANE PROTEIN 23-JAN-18 6FKA
TITLE CRYSTAL STRUCTURE OF N2C/D282C STABILIZED OPSIN BOUND TO RS11
CAVEAT 6FKA NED DENSITY ABOVE LIGAND IN THE CHANNEL
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RHODOPSIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 1-326;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 3 ORGANISM_COMMON: BOVINE;
SOURCE 4 ORGANISM_TAXID: 9913;
SOURCE 5 GENE: RHO;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCMV-TET O
KEYWDS RHODOPSIN, G PROTEIN-COUPLED RECEPTORS, RETINITIS PIGMENTOSA,
KEYWDS 2 SIGNALING PROTEIN, SENSORY TRANSDUCTION, PHOTORECEPTOR PROTEIN,
KEYWDS 3 KINTEGRAL MEMBRANE PROTEIN, VISION, MEMBRANE, RECEPTOR, TRANSDUCER
KEYWDS 4 PHOTORECEPTOR, SMALL MOLECULE COMPLEX, MEMBRANE PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR D.MATTLE,J.STANDFUSS,R.DAWSON
REVDAT 5 16-OCT-24 6FKA 1 REMARK
REVDAT 4 17-JAN-24 6FKA 1 HETSYN LINK
REVDAT 3 29-JUL-20 6FKA 1 COMPND REMARK HETNAM LINK
REVDAT 3 2 1 SITE ATOM
REVDAT 2 11-APR-18 6FKA 1 JRNL
REVDAT 1 04-APR-18 6FKA 0
JRNL AUTH D.MATTLE,B.KUHN,J.AEBI,M.BEDOUCHA,D.KEKILLI,N.GROZINGER,
JRNL AUTH 2 A.ALKER,M.G.RUDOLPH,G.SCHMID,G.F.X.SCHERTLER,M.HENNIG,
JRNL AUTH 3 J.STANDFUSS,R.J.P.DAWSON
JRNL TITL LIGAND CHANNEL IN PHARMACOLOGICALLY STABILIZED RHODOPSIN.
JRNL REF PROC. NATL. ACAD. SCI. V. 115 3640 2018
JRNL REF 2 U.S.A.
JRNL REFN ESSN 1091-6490
JRNL PMID 29555765
JRNL DOI 10.1073/PNAS.1718084115
REMARK 2
REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.10_2155: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 34717
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.210
REMARK 3 R VALUE (WORKING SET) : 0.210
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1770
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 47.7440 - 6.3441 0.99 2610 135 0.2201 0.1958
REMARK 3 2 6.3441 - 5.0373 1.00 2560 148 0.2169 0.2309
REMARK 3 3 5.0373 - 4.4011 1.00 2537 139 0.1828 0.1706
REMARK 3 4 4.4011 - 3.9989 1.00 2552 135 0.1803 0.2064
REMARK 3 5 3.9989 - 3.7124 1.00 2527 141 0.1893 0.2380
REMARK 3 6 3.7124 - 3.4936 1.00 2543 133 0.2014 0.2154
REMARK 3 7 3.4936 - 3.3187 1.00 2526 122 0.2117 0.2306
REMARK 3 8 3.3187 - 3.1742 1.00 2532 123 0.2198 0.2439
REMARK 3 9 3.1742 - 3.0521 1.00 2534 141 0.2272 0.2537
REMARK 3 10 3.0521 - 2.9468 1.00 2516 123 0.2510 0.2922
REMARK 3 11 2.9468 - 2.8546 1.00 2515 139 0.2672 0.3334
REMARK 3 12 2.8546 - 2.7730 1.00 2497 147 0.2685 0.3056
REMARK 3 13 2.7730 - 2.7000 1.00 2498 144 0.2835 0.3183
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.910
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 2889
REMARK 3 ANGLE : 0.687 3932
REMARK 3 CHIRALITY : 0.039 458
REMARK 3 PLANARITY : 0.004 460
REMARK 3 DIHEDRAL : 14.189 1695
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A):-353.6998-171.4414 150.6499
REMARK 3 T TENSOR
REMARK 3 T11: 0.5351 T22: 0.4338
REMARK 3 T33: 0.5787 T12: 0.0153
REMARK 3 T13: -0.0719 T23: 0.0442
REMARK 3 L TENSOR
REMARK 3 L11: 1.9272 L22: 3.2550
REMARK 3 L33: 1.1121 L12: 1.2121
REMARK 3 L13: -0.0566 L23: -0.0676
REMARK 3 S TENSOR
REMARK 3 S11: -0.0936 S12: 0.1715 S13: 0.1219
REMARK 3 S21: -0.2907 S22: 0.0880 S23: 0.1410
REMARK 3 S31: 0.0228 S32: -0.0572 S33: 0.0107
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6FKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-18.
REMARK 100 THE DEPOSITION ID IS D_1200008392.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-DEC-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (VERSION OCT 15
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45835
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460
REMARK 200 RESOLUTION RANGE LOW (A) : 47.740
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 11.45
REMARK 200 R MERGE (I) : 0.09210
REMARK 200 R SYM (I) : 0.09210
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7
REMARK 200 DATA REDUNDANCY IN SHELL : 11.10
REMARK 200 R MERGE FOR SHELL (I) : 0.95650
REMARK 200 R SYM FOR SHELL (I) : 0.95650
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: 4J4Q
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): NULL
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: SEE PUBLICATION, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z
REMARK 290 6555 -X,-X+Y,-Z
REMARK 290 7555 X+2/3,Y+1/3,Z+1/3
REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3
REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3
REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3
REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3
REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3
REMARK 290 13555 X+1/3,Y+2/3,Z+2/3
REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3
REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3
REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3
REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3
REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 122.06200
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.47253
REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.06700
REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 122.06200
REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 70.47253
REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.06700
REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 122.06200
REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 70.47253
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.06700
REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 122.06200
REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 70.47253
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.06700
REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 122.06200
REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 70.47253
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.06700
REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 122.06200
REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 70.47253
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.06700
REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 140.94506
REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.13400
REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 140.94506
REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 74.13400
REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 140.94506
REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 74.13400
REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 140.94506
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.13400
REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 140.94506
REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 74.13400
REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 140.94506
REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 74.13400
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 PRO A 327
REMARK 465 LEU A 328
REMARK 465 GLY A 329
REMARK 465 ASP A 330
REMARK 465 ASP A 331
REMARK 465 GLU A 332
REMARK 465 ALA A 333
REMARK 465 SER A 334
REMARK 465 THR A 335
REMARK 465 THR A 336
REMARK 465 VAL A 337
REMARK 465 SER A 338
REMARK 465 LYS A 339
REMARK 465 THR A 340
REMARK 465 GLU A 341
REMARK 465 THR A 342
REMARK 465 SER A 343
REMARK 465 GLN A 344
REMARK 465 VAL A 345
REMARK 465 ALA A 346
REMARK 465 PRO A 347
REMARK 465 ALA A 348
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 513 O HOH A 513 17437 2.11
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 8 17.35 80.70
REMARK 500 GLN A 28 49.86 -102.77
REMARK 500 SER A 176 -163.91 61.56
REMARK 500 HIS A 195 93.67 -52.76
REMARK 500 PHE A 212 -54.34 -147.00
REMARK 500 GLN A 237 47.11 -140.43
REMARK 500 GLN A 279 24.40 -72.40
REMARK 500 ILE A 307 -55.30 -124.68
REMARK 500 CYS A 323 13.80 58.79
REMARK 500
REMARK 500 REMARK: NULL
DBREF 6FKA A 1 348 UNP P02699 OPSD_BOVIN 1 348
SEQADV 6FKA ACE A 0 UNP P02699 ACETYLATION
SEQADV 6FKA CYS A 2 UNP P02699 ASN 2 CONFLICT
SEQADV 6FKA CYS A 282 UNP P02699 ASP 282 CONFLICT
SEQRES 1 A 349 ACE MET CYS GLY THR GLU GLY PRO ASN PHE TYR VAL PRO
SEQRES 2 A 349 PHE SER ASN LYS THR GLY VAL VAL ARG SER PRO PHE GLU
SEQRES 3 A 349 ALA PRO GLN TYR TYR LEU ALA GLU PRO TRP GLN PHE SER
SEQRES 4 A 349 MET LEU ALA ALA TYR MET PHE LEU LEU ILE MET LEU GLY
SEQRES 5 A 349 PHE PRO ILE ASN PHE LEU THR LEU TYR VAL THR VAL GLN
SEQRES 6 A 349 HIS LYS LYS LEU ARG THR PRO LEU ASN TYR ILE LEU LEU
SEQRES 7 A 349 ASN LEU ALA VAL ALA ASP LEU PHE MET VAL PHE GLY GLY
SEQRES 8 A 349 PHE THR THR THR LEU TYR THR SER LEU HIS GLY TYR PHE
SEQRES 9 A 349 VAL PHE GLY PRO THR GLY CYS ASN LEU GLU GLY PHE PHE
SEQRES 10 A 349 ALA THR LEU GLY GLY GLU ILE ALA LEU TRP SER LEU VAL
SEQRES 11 A 349 VAL LEU ALA ILE GLU ARG TYR VAL VAL VAL CYS LYS PRO
SEQRES 12 A 349 MET SER ASN PHE ARG PHE GLY GLU ASN HIS ALA ILE MET
SEQRES 13 A 349 GLY VAL ALA PHE THR TRP VAL MET ALA LEU ALA CYS ALA
SEQRES 14 A 349 ALA PRO PRO LEU VAL GLY TRP SER ARG TYR ILE PRO GLU
SEQRES 15 A 349 GLY MET GLN CYS SER CYS GLY ILE ASP TYR TYR THR PRO
SEQRES 16 A 349 HIS GLU GLU THR ASN ASN GLU SER PHE VAL ILE TYR MET
SEQRES 17 A 349 PHE VAL VAL HIS PHE ILE ILE PRO LEU ILE VAL ILE PHE
SEQRES 18 A 349 PHE CYS TYR GLY GLN LEU VAL PHE THR VAL LYS GLU ALA
SEQRES 19 A 349 ALA ALA GLN GLN GLN GLU SER ALA THR THR GLN LYS ALA
SEQRES 20 A 349 GLU LYS GLU VAL THR ARG MET VAL ILE ILE MET VAL ILE
SEQRES 21 A 349 ALA PHE LEU ILE CYS TRP LEU PRO TYR ALA GLY VAL ALA
SEQRES 22 A 349 PHE TYR ILE PHE THR HIS GLN GLY SER CYS PHE GLY PRO
SEQRES 23 A 349 ILE PHE MET THR ILE PRO ALA PHE PHE ALA LYS THR SER
SEQRES 24 A 349 ALA VAL TYR ASN PRO VAL ILE TYR ILE MET MET ASN LYS
SEQRES 25 A 349 GLN PHE ARG ASN CYS MET VAL THR THR LEU CYS CYS GLY
SEQRES 26 A 349 LYS ASN PRO LEU GLY ASP ASP GLU ALA SER THR THR VAL
SEQRES 27 A 349 SER LYS THR GLU THR SER GLN VAL ALA PRO ALA
HET ACE A 0 3
HET NAG B 1 14
HET NAG B 2 14
HET BMA B 3 11
HET MAN B 4 11
HET MAN B 5 11
HET PLM A 401 17
HET BOG A 407 20
HET BOG A 408 20
HET BOG A 409 20
HET BOG A 410 20
HET BOG A 411 20
HET DN5 A 412 28
HETNAM ACE ACETYL GROUP
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM BMA BETA-D-MANNOPYRANOSE
HETNAM MAN ALPHA-D-MANNOPYRANOSE
HETNAM PLM PALMITIC ACID
HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE
HETNAM DN5 (2~{S})-2-(3,4-DICHLOROPHENYL)-3-METHYL-1-SPIRO[1,3-
HETNAM 2 DN5 BENZODIOXOLE-2,4'-PIPERIDINE]-1'-YL-BUTAN-1-ONE
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE
HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE
HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D-
HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE
FORMUL 1 ACE C2 H4 O
FORMUL 2 NAG 2(C8 H15 N O6)
FORMUL 2 BMA C6 H12 O6
FORMUL 2 MAN 2(C6 H12 O6)
FORMUL 3 PLM C16 H32 O2
FORMUL 4 BOG 5(C14 H28 O6)
FORMUL 9 DN5 C22 H23 CL2 N O3
FORMUL 10 HOH *19(H2 O)
HELIX 1 AA1 GLU A 33 HIS A 65 1 33
HELIX 2 AA2 LYS A 66 ARG A 69 5 4
HELIX 3 AA3 THR A 70 GLY A 90 1 21
HELIX 4 AA4 GLY A 90 LEU A 99 1 10
HELIX 5 AA5 PHE A 105 LYS A 141 1 37
HELIX 6 AA6 GLY A 149 ALA A 169 1 21
HELIX 7 AA7 PRO A 170 VAL A 173 5 4
HELIX 8 AA8 HIS A 195 THR A 198 5 4
HELIX 9 AA9 ASN A 199 HIS A 211 1 13
HELIX 10 AB1 PHE A 212 GLN A 236 1 25
HELIX 11 AB2 SER A 240 THR A 277 1 38
HELIX 12 AB3 ILE A 286 MET A 288 5 3
HELIX 13 AB4 THR A 289 LYS A 296 1 8
HELIX 14 AB5 THR A 297 ILE A 307 1 11
HELIX 15 AB6 ASN A 310 CYS A 322 1 13
SHEET 1 AA1 2 THR A 4 GLY A 6 0
SHEET 2 AA1 2 PHE A 9 VAL A 11 -1 O VAL A 11 N THR A 4
SHEET 1 AA2 2 TYR A 178 GLU A 181 0
SHEET 2 AA2 2 SER A 186 ILE A 189 -1 O SER A 186 N GLU A 181
SSBOND 1 CYS A 2 CYS A 282 1555 1555 2.03
SSBOND 2 CYS A 110 CYS A 187 1555 1555 2.04
LINK C ACE A 0 N MET A 1 1555 1555 1.35
LINK ND2 ASN A 15 C1 NAG B 1 1555 1555 1.44
LINK SG CYS A 322 C1 PLM A 401 1555 1555 1.73
LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44
LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44
LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.44
LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.44
CRYST1 244.124 244.124 111.201 90.00 90.00 120.00 H 3 2 18
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.004096 0.002365 0.000000 0.00000
SCALE2 0.000000 0.004730 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008993 0.00000
HETATM 1 C ACE A 0 -354.937-140.071 150.725 1.00103.03 C
ANISOU 1 C ACE A 0 12793 8728 17626 595 -1136 1390 C
HETATM 2 O ACE A 0 -355.988-140.062 150.081 1.00114.32 O
ANISOU 2 O ACE A 0 14128 10075 19234 684 -1287 1549 O
HETATM 3 CH3 ACE A 0 -354.981-139.915 152.221 1.00 93.54 C
ANISOU 3 CH3 ACE A 0 11539 7475 16527 632 -909 1080 C