HEADER SIGNALING PROTEIN 24-JAN-18 6FKK TITLE DROSOPHILA SEMAPHORIN 1B, EXTRACELLULAR DOMAINS 1-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIP07328P; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SEMA-1B,ISOFORM A,ISOFORM B,ISOFORM C,SEMAPHORIN-LIKE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SEMA1B, SEMA-1B, SEMA-1B-RB, SEMAPHORIN-LIKE, CG6446, SOURCE 6 DMEL_CG6446; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS SEMAPHORIN, SEMA DOMAIN, AXON GUIDANCE CUE, CELL CELL SIGNALING, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ROZBESKY,K.HARLOS,E.Y.JONES REVDAT 6 06-NOV-24 6FKK 1 REMARK REVDAT 5 17-JAN-24 6FKK 1 HETSYN LINK REVDAT 4 29-JUL-20 6FKK 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 28-AUG-19 6FKK 1 JRNL REVDAT 2 21-AUG-19 6FKK 1 JRNL REVDAT 1 06-FEB-19 6FKK 0 JRNL AUTH D.ROZBESKY,R.A.ROBINSON,V.JAIN,M.RENNER,T.MALINAUSKAS, JRNL AUTH 2 K.HARLOS,C.SIEBOLD,E.Y.JONES JRNL TITL DIVERSITY OF OLIGOMERIZATION IN DROSOPHILA SEMAPHORINS JRNL TITL 2 SUGGESTS A MECHANISM OF FUNCTIONAL FINE-TUNING. JRNL REF NAT COMMUN V. 10 3691 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31417095 JRNL DOI 10.1038/S41467-019-11683-Y REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13RC2_2986: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.8 REMARK 3 NUMBER OF REFLECTIONS : 22592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 81.6632 - 5.5599 0.97 3492 188 0.1897 0.2349 REMARK 3 2 5.5599 - 4.4131 0.98 3350 165 0.1602 0.1748 REMARK 3 3 4.4131 - 3.8553 0.98 3278 180 0.1810 0.2358 REMARK 3 4 3.8553 - 3.5028 0.94 3129 167 0.2330 0.2699 REMARK 3 5 3.5028 - 3.2517 0.85 2793 174 0.2646 0.3276 REMARK 3 6 3.2517 - 3.0600 0.69 2294 110 0.2872 0.3489 REMARK 3 7 3.0600 - 2.9067 0.53 1735 90 0.3044 0.3436 REMARK 3 8 2.9067 - 2.7802 0.42 1380 67 0.3422 0.3402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4337 REMARK 3 ANGLE : 0.619 5921 REMARK 3 CHIRALITY : 0.044 703 REMARK 3 PLANARITY : 0.004 734 REMARK 3 DIHEDRAL : 10.943 2615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 48.6252 39.8763 -6.0814 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.2435 REMARK 3 T33: 0.6254 T12: -0.0104 REMARK 3 T13: -0.0120 T23: 0.1117 REMARK 3 L TENSOR REMARK 3 L11: 1.8580 L22: 2.3444 REMARK 3 L33: 3.4965 L12: -1.0743 REMARK 3 L13: -0.4237 L23: 0.4215 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: 0.0067 S13: -0.0132 REMARK 3 S21: -0.2845 S22: 0.0423 S23: 0.1578 REMARK 3 S31: 0.2181 S32: -0.4568 S33: 0.0011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27778 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 81.628 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.64100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OKY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRISODIUM CITRATE AND 20% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.80100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.60200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.20150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.00250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.40050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.80100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.60200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 117.00250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 70.20150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.40050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 34 REMARK 465 THR A 35 REMARK 465 GLY A 36 REMARK 465 ASP A 37 REMARK 465 VAL A 38 REMARK 465 LYS A 39 REMARK 465 PRO A 40 REMARK 465 ASP A 41 REMARK 465 PRO A 147 REMARK 465 VAL A 148 REMARK 465 GLU A 149 REMARK 465 VAL A 150 REMARK 465 SER A 151 REMARK 465 SER A 152 REMARK 465 GLU A 153 REMARK 465 GLU A 154 REMARK 465 ALA A 155 REMARK 465 GLY A 156 REMARK 465 SER A 157 REMARK 465 ALA A 158 REMARK 465 GLY A 159 REMARK 465 HIS A 160 REMARK 465 ALA A 161 REMARK 465 ILE A 570 REMARK 465 PRO A 571 REMARK 465 ARG A 572 REMARK 465 ASP A 573 REMARK 465 ALA A 574 REMARK 465 PRO A 575 REMARK 465 GLY A 576 REMARK 465 ALA A 577 REMARK 465 GLU A 578 REMARK 465 THR A 579 REMARK 465 VAL A 580 REMARK 465 SER A 581 REMARK 465 PHE A 582 REMARK 465 VAL A 583 REMARK 465 THR A 584 REMARK 465 MET A 585 REMARK 465 ALA A 586 REMARK 465 PRO A 587 REMARK 465 PRO A 588 REMARK 465 PRO A 589 REMARK 465 THR A 590 REMARK 465 GLU A 591 REMARK 465 GLU A 592 REMARK 465 GLN A 593 REMARK 465 LYS A 594 REMARK 465 LEU A 595 REMARK 465 LEU A 596 REMARK 465 TYR A 597 REMARK 465 SER A 598 REMARK 465 ASN A 599 REMARK 465 VAL A 600 REMARK 465 GLY A 601 REMARK 465 SER A 602 REMARK 465 GLY A 603 REMARK 465 THR A 604 REMARK 465 LYS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 465 HIS A 609 REMARK 465 HIS A 610 REMARK 465 HIS A 611 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 411 O3 MAN B 5 10664 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 60 72.26 52.63 REMARK 500 ASP A 77 -5.83 67.31 REMARK 500 THR A 199 -154.21 -159.33 REMARK 500 ARG A 212 118.14 -170.47 REMARK 500 TYR A 274 -122.29 59.16 REMARK 500 LYS A 354 83.54 -66.45 REMARK 500 HIS A 405 -1.15 69.89 REMARK 500 ASN A 460 -49.63 -132.77 REMARK 500 HIS A 510 32.41 -91.20 REMARK 500 HIS A 535 82.08 -65.32 REMARK 500 HIS A 545 74.60 -118.25 REMARK 500 ASN A 557 41.81 -99.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 6FKK A 37 602 UNP Q7KK54 Q7KK54_DROME 37 602 SEQADV 6FKK GLU A 34 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK THR A 35 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK GLY A 36 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK GLY A 603 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK THR A 604 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK LYS A 605 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK HIS A 606 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK HIS A 607 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK HIS A 608 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK HIS A 609 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK HIS A 610 UNP Q7KK54 EXPRESSION TAG SEQADV 6FKK HIS A 611 UNP Q7KK54 EXPRESSION TAG SEQRES 1 A 578 GLU THR GLY ASP VAL LYS PRO ASP LEU GLN THR LYS GLN SEQRES 2 A 578 ASP LYS VAL LEU ALA HIS PHE ILE GLY ASN SER THR ASP SEQRES 3 A 578 TYR PHE LYS ILE LEU ASP HIS ASN ASP GLU PHE VAL LEU SEQRES 4 A 578 VAL GLY ALA LYS ASP VAL ILE TYR ASN VAL SER LEU ASN SEQRES 5 A 578 GLY LEU LYS GLU ILE ALA ARG LEU GLU TRP HIS SER THR SEQRES 6 A 578 ASP ALA ASP ARG GLU LEU CYS ALA LEU LYS GLY LYS HIS SEQRES 7 A 578 GLU TRP ASP CYS HIS ASN TYR LEU ARG VAL TYR ALA LEU SEQRES 8 A 578 ARG PRO ASN GLY GLU VAL LEU LEU CYS GLY THR ASN SER SEQRES 9 A 578 TYR LYS PRO ARG CYS ARG HIS TYR THR PRO VAL GLU VAL SEQRES 10 A 578 SER SER GLU GLU ALA GLY SER ALA GLY HIS ALA HIS ALA SEQRES 11 A 578 MET ARG TYR GLU VAL SER ARG ASP VAL GLU ALA GLN GLY SEQRES 12 A 578 LEU CYS PRO TYR SER PRO ALA HIS ASN SER THR TYR ALA SEQRES 13 A 578 PHE ALA ASP GLY HIS LEU TYR SER ALA THR VAL ALA ASP SEQRES 14 A 578 PHE SER GLY GLY ASP PRO LEU ILE TYR ARG GLU ASN LEU SEQRES 15 A 578 ARG THR GLU GLN TYR ASP LEU LYS GLN LEU ASN GLN PRO SEQRES 16 A 578 ASP PHE VAL GLY ALA ILE GLU ARG ASN GLY TYR VAL LEU SEQRES 17 A 578 PHE PHE PHE ARG GLU LEU SER MET GLU VAL MET ASN PHE SEQRES 18 A 578 GLY LYS ALA VAL TYR SER ARG VAL ALA ARG VAL CYS LYS SEQRES 19 A 578 ASN ASP ARG GLY GLY PRO TYR SER HIS GLY LYS SER TRP SEQRES 20 A 578 THR SER PHE LEU LYS ALA ARG LEU ASN CYS SER VAL PRO SEQRES 21 A 578 GLY GLU PHE PRO PHE TYR PHE ASP GLU ILE GLN ALA ILE SEQRES 22 A 578 SER PRO ILE VAL GLU SER GLY SER LYS SER LEU ILE TYR SEQRES 23 A 578 ALA VAL PHE THR THR SER VAL ASN ALA ILE PRO GLY SER SEQRES 24 A 578 ALA VAL CYS ALA PHE ASN VAL ASP ASP ILE LEU ALA ALA SEQRES 25 A 578 PHE ASP GLY GLU PHE LYS SER GLN LYS ASP SER GLN SER SEQRES 26 A 578 HIS TRP LEU PRO VAL GLU ARG GLU GLN VAL PRO LYS PRO SEQRES 27 A 578 ARG PRO GLY GLN CYS VAL GLU ASP SER ARG THR LEU THR SEQRES 28 A 578 SER ILE ALA VAL ASN PHE ILE LYS ASN HIS PRO LEU MET SEQRES 29 A 578 GLU GLU ALA VAL PRO ALA VAL HIS GLY ARG PRO LEU LEU SEQRES 30 A 578 THR LYS VAL ASN LEU HIS HIS ARG LEU THR ALA ILE ALA SEQRES 31 A 578 VAL HIS PRO GLN VAL LYS SER LEU SER GLY ALA TYR TYR SEQRES 32 A 578 ASP VAL ILE TYR SER GLY THR ASP ASP GLY LYS VAL THR SEQRES 33 A 578 LYS PHE ILE ASN ILE LEU SER THR HIS PRO ASN SER THR SEQRES 34 A 578 VAL ASP ARG LEU LYS THR VAL VAL ILE SER GLU MET GLN SEQRES 35 A 578 VAL LEU PRO LEU GLY THR PRO ILE ARG GLU LEU VAL ILE SEQRES 36 A 578 SER THR SER LYS ASN SER LEU VAL VAL VAL SER ASP GLY SEQRES 37 A 578 SER LEU VAL SER VAL PRO LEU HIS HIS CYS SER HIS ILE SEQRES 38 A 578 VAL ASP CYS LEU GLY CYS LEU SER LEU GLN ASP PRO ILE SEQRES 39 A 578 CYS ALA TRP ASP LEU GLN THR HIS GLU CYS LYS ASN LEU SEQRES 40 A 578 ALA THR SER GLN HIS LYS PHE GLY THR LYS THR TYR LEU SEQRES 41 A 578 GLN SER LEU ASN SER THR LYS LYS ALA ALA ALA LEU LEU SEQRES 42 A 578 CYS PRO HIS ILE PRO ARG ASP ALA PRO GLY ALA GLU THR SEQRES 43 A 578 VAL SER PHE VAL THR MET ALA PRO PRO PRO THR GLU GLU SEQRES 44 A 578 GLN LYS LEU LEU TYR SER ASN VAL GLY SER GLY THR LYS SEQRES 45 A 578 HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET MAN B 8 11 HET MAN B 9 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG A1009 14 HET NAG A1014 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 7(C6 H12 O6) HELIX 1 AA1 ASN A 56 TYR A 60 5 5 HELIX 2 AA2 THR A 98 LYS A 108 1 11 HELIX 3 AA3 PRO A 273 SER A 279 5 7 HELIX 4 AA4 VAL A 339 PHE A 346 1 8 HELIX 5 AA5 ASP A 379 LEU A 383 5 5 HELIX 6 AA6 THR A 384 HIS A 394 1 11 HELIX 7 AA7 VAL A 404 ARG A 407 5 4 HELIX 8 AA8 ASP A 516 LEU A 523 1 8 HELIX 9 AA9 THR A 559 CYS A 567 1 9 SHEET 1 AA1 4 ALA A 51 ILE A 54 0 SHEET 2 AA1 4 SER A 502 PRO A 507 -1 O LEU A 503 N PHE A 53 SHEET 3 AA1 4 SER A 494 VAL A 498 -1 N LEU A 495 O VAL A 506 SHEET 4 AA1 4 GLU A 485 SER A 489 -1 N VAL A 487 O VAL A 496 SHEET 1 AA2 4 LYS A 62 HIS A 66 0 SHEET 2 AA2 4 PHE A 70 GLY A 74 -1 O LEU A 72 N ASP A 65 SHEET 3 AA2 4 VAL A 78 SER A 83 -1 O VAL A 82 N VAL A 71 SHEET 4 AA2 4 GLU A 89 GLU A 94 -1 O ALA A 91 N ASN A 81 SHEET 1 AA3 4 LEU A 119 LEU A 124 0 SHEET 2 AA3 4 VAL A 130 GLY A 134 -1 O LEU A 131 N ALA A 123 SHEET 3 AA3 4 ARG A 141 THR A 146 -1 O ARG A 143 N LEU A 132 SHEET 4 AA3 4 GLU A 167 GLU A 173 -1 O SER A 169 N HIS A 144 SHEET 1 AA4 3 THR A 187 ALA A 191 0 SHEET 2 AA4 3 HIS A 194 VAL A 200 -1 O TYR A 196 N ALA A 189 SHEET 3 AA4 3 PRO A 208 TYR A 211 -1 O TYR A 211 N SER A 197 SHEET 1 AA5 5 ASP A 229 ARG A 236 0 SHEET 2 AA5 5 TYR A 239 LEU A 247 -1 O LEU A 241 N ILE A 234 SHEET 3 AA5 5 VAL A 258 CYS A 266 -1 O ARG A 261 N PHE A 244 SHEET 4 AA5 5 LEU A 284 ASN A 289 -1 O LEU A 288 N SER A 260 SHEET 5 AA5 5 VAL A 401 PRO A 402 1 O VAL A 401 N ARG A 287 SHEET 1 AA6 2 SER A 291 VAL A 292 0 SHEET 2 AA6 2 PHE A 298 TYR A 299 -1 O PHE A 298 N VAL A 292 SHEET 1 AA7 3 GLU A 302 ILE A 306 0 SHEET 2 AA7 3 LYS A 315 THR A 323 -1 O VAL A 321 N GLN A 304 SHEET 3 AA7 3 VAL A 310 SER A 312 -1 N VAL A 310 O LEU A 317 SHEET 1 AA8 4 GLU A 302 ILE A 306 0 SHEET 2 AA8 4 LYS A 315 THR A 323 -1 O VAL A 321 N GLN A 304 SHEET 3 AA8 4 GLY A 331 ASN A 338 -1 O CYS A 335 N ALA A 320 SHEET 4 AA8 4 LEU A 410 VAL A 413 -1 O LYS A 412 N SER A 332 SHEET 1 AA9 4 LEU A 419 LYS A 429 0 SHEET 2 AA9 4 TYR A 435 THR A 443 -1 O TYR A 440 N ALA A 423 SHEET 3 AA9 4 LYS A 447 SER A 456 -1 O PHE A 451 N ILE A 439 SHEET 4 AA9 4 ARG A 465 GLN A 475 -1 O ARG A 465 N SER A 456 SHEET 1 AB1 3 GLU A 536 ASN A 539 0 SHEET 2 AB1 3 CYS A 528 ASP A 531 -1 N ALA A 529 O LYS A 538 SHEET 3 AB1 3 TYR A 552 LEU A 553 -1 O LEU A 553 N TRP A 530 SSBOND 1 CYS A 105 CYS A 115 1555 1555 2.03 SSBOND 2 CYS A 133 CYS A 142 1555 1555 2.03 SSBOND 3 CYS A 266 CYS A 376 1555 1555 2.03 SSBOND 4 CYS A 290 CYS A 335 1555 1555 2.03 SSBOND 5 CYS A 511 CYS A 528 1555 1555 2.03 SSBOND 6 CYS A 517 CYS A 567 1555 1555 2.03 SSBOND 7 CYS A 520 CYS A 537 1555 1555 2.03 LINK ND2 ASN A 56 C1 NAG A1009 1555 1555 1.44 LINK ND2 ASN A 81 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 185 C1 NAG A1014 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 7 1555 1555 1.45 LINK O2 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.43 LINK O3 MAN B 7 C1 MAN B 8 1555 1555 1.44 LINK O6 MAN B 7 C1 MAN B 9 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 CRYST1 163.256 163.256 140.403 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006125 0.003536 0.000000 0.00000 SCALE2 0.000000 0.007073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007122 0.00000