data_6FKQ # _entry.id 6FKQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6FKQ pdb_00006fkq 10.2210/pdb6fkq/pdb WWPDB D_1200008351 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-21 2 'Structure model' 1 1 2018-04-04 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2024-01-17 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Atomic model' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Refinement description' 12 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' entity_name_com 6 3 'Structure model' pdbx_branch_scheme 7 3 'Structure model' pdbx_chem_comp_identifier 8 3 'Structure model' pdbx_entity_branch 9 3 'Structure model' pdbx_entity_branch_descriptor 10 3 'Structure model' pdbx_entity_branch_link 11 3 'Structure model' pdbx_entity_branch_list 12 3 'Structure model' pdbx_entity_nonpoly 13 3 'Structure model' pdbx_molecule_features 14 3 'Structure model' pdbx_nonpoly_scheme 15 3 'Structure model' pdbx_struct_assembly_gen 16 3 'Structure model' pdbx_struct_conn_angle 17 3 'Structure model' pdbx_validate_close_contact 18 3 'Structure model' struct_asym 19 3 'Structure model' struct_conn 20 3 'Structure model' struct_site 21 3 'Structure model' struct_site_gen 22 4 'Structure model' chem_comp 23 4 'Structure model' chem_comp_atom 24 4 'Structure model' chem_comp_bond 25 4 'Structure model' database_2 26 4 'Structure model' pdbx_initial_refinement_model 27 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_atom_site.auth_asym_id' 5 3 'Structure model' '_atom_site.auth_seq_id' 6 3 'Structure model' '_atom_site.label_asym_id' 7 3 'Structure model' '_atom_site.label_entity_id' 8 3 'Structure model' '_chem_comp.name' 9 3 'Structure model' '_chem_comp.type' 10 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 13 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 14 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 15 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 16 3 'Structure model' '_struct_conn.conn_type_id' 17 3 'Structure model' '_struct_conn.id' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.pdbx_role' 21 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_chem_comp.pdbx_synonyms' 35 4 'Structure model' '_database_2.pdbx_DOI' 36 4 'Structure model' '_database_2.pdbx_database_accession' 37 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6FKQ _pdbx_database_status.recvd_initial_deposition_date 2018-01-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Netrin/DCC complex' _pdbx_database_related.db_id 4URT _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bhowmick, T.' 1 ? 'Meijers, R.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Neuron _citation.journal_id_ASTM NERNET _citation.journal_id_CSD 2038 _citation.journal_id_ISSN 1097-4199 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 97 _citation.language ? _citation.page_first 1261 _citation.page_last 1267.e4 _citation.title 'Structural Basis for Draxin-Modulated Axon Guidance and Fasciculation by Netrin-1 through DCC.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.neuron.2018.02.010 _citation.pdbx_database_id_PubMed 29503192 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Bhowmick, T.' 2 ? primary 'Liu, Y.' 3 ? primary 'Gao, X.' 4 ? primary 'Mertens, H.D.T.' 5 ? primary 'Svergun, D.I.' 6 ? primary 'Xiao, J.' 7 ? primary 'Zhang, Y.' 8 ? primary 'Wang, J.H.' 9 ? primary 'Meijers, R.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Netrin-1 46827.820 1 ? ? ? 'NETRIN-1 IS A PROTOTYPICAL AXON GUIDANCE CUE THAT BINDS TO THE RECEPTOR DELETED IN COLORECTAL CANCER (DCC).' 2 polymer man Draxin 2302.597 1 ? ? 'UNP RESIDUES 225-243' ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? 4 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 627.594 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 non-polymer syn 'SULFATE ION' 96.063 10 ? ? ? ? 7 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Epididymis tissue protein Li 131P' 2 'Dorsal inhibitory axon guidance protein,Dorsal repulsive axon guidance protein,Neucrin' 4 triacetyl-beta-chitotriose # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DPCSDENGHPRRCIPDFVNAAFGKDVRVSSTCGRPPARYCVVSERGEERLRSCHLCNASDPKKAHPPAFLTDLNNPHNLT CWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPITKQNE QEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENEDDSELARDSYFYAVSD LQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACNCNLHARRCRFNMELYK LSGRKSGGVCLNCRHNTAGRHCHYCKEGYYRDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQCPCKDGVTGITCNRCA KGYQQSRSPIAPCIK ; ;DPCSDENGHPRRCIPDFVNAAFGKDVRVSSTCGRPPARYCVVSERGEERLRSCHLCNASDPKKAHPPAFLTDLNNPHNLT CWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPITKQNE QEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENEDDSELARDSYFYAVSD LQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACNCNLHARRCRFNMELYK LSGRKSGGVCLNCRHNTAGRHCHYCKEGYYRDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQCPCKDGVTGITCNRCA KGYQQSRSPIAPCIK ; A ? 2 'polypeptide(L)' no no MPTLDMALFDWTDYEDLKP MPTLDMALFDWTDYEDLKP B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'CALCIUM ION' CA 6 'SULFATE ION' SO4 7 GLYCEROL GOL # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 PRO n 1 3 CYS n 1 4 SER n 1 5 ASP n 1 6 GLU n 1 7 ASN n 1 8 GLY n 1 9 HIS n 1 10 PRO n 1 11 ARG n 1 12 ARG n 1 13 CYS n 1 14 ILE n 1 15 PRO n 1 16 ASP n 1 17 PHE n 1 18 VAL n 1 19 ASN n 1 20 ALA n 1 21 ALA n 1 22 PHE n 1 23 GLY n 1 24 LYS n 1 25 ASP n 1 26 VAL n 1 27 ARG n 1 28 VAL n 1 29 SER n 1 30 SER n 1 31 THR n 1 32 CYS n 1 33 GLY n 1 34 ARG n 1 35 PRO n 1 36 PRO n 1 37 ALA n 1 38 ARG n 1 39 TYR n 1 40 CYS n 1 41 VAL n 1 42 VAL n 1 43 SER n 1 44 GLU n 1 45 ARG n 1 46 GLY n 1 47 GLU n 1 48 GLU n 1 49 ARG n 1 50 LEU n 1 51 ARG n 1 52 SER n 1 53 CYS n 1 54 HIS n 1 55 LEU n 1 56 CYS n 1 57 ASN n 1 58 ALA n 1 59 SER n 1 60 ASP n 1 61 PRO n 1 62 LYS n 1 63 LYS n 1 64 ALA n 1 65 HIS n 1 66 PRO n 1 67 PRO n 1 68 ALA n 1 69 PHE n 1 70 LEU n 1 71 THR n 1 72 ASP n 1 73 LEU n 1 74 ASN n 1 75 ASN n 1 76 PRO n 1 77 HIS n 1 78 ASN n 1 79 LEU n 1 80 THR n 1 81 CYS n 1 82 TRP n 1 83 GLN n 1 84 SER n 1 85 GLU n 1 86 ASN n 1 87 TYR n 1 88 LEU n 1 89 GLN n 1 90 PHE n 1 91 PRO n 1 92 HIS n 1 93 ASN n 1 94 VAL n 1 95 THR n 1 96 LEU n 1 97 THR n 1 98 LEU n 1 99 SER n 1 100 LEU n 1 101 GLY n 1 102 LYS n 1 103 LYS n 1 104 PHE n 1 105 GLU n 1 106 VAL n 1 107 THR n 1 108 TYR n 1 109 VAL n 1 110 SER n 1 111 LEU n 1 112 GLN n 1 113 PHE n 1 114 CYS n 1 115 SER n 1 116 PRO n 1 117 ARG n 1 118 PRO n 1 119 GLU n 1 120 SER n 1 121 MET n 1 122 ALA n 1 123 ILE n 1 124 TYR n 1 125 LYS n 1 126 SER n 1 127 MET n 1 128 ASP n 1 129 TYR n 1 130 GLY n 1 131 ARG n 1 132 THR n 1 133 TRP n 1 134 VAL n 1 135 PRO n 1 136 PHE n 1 137 GLN n 1 138 PHE n 1 139 TYR n 1 140 SER n 1 141 THR n 1 142 GLN n 1 143 CYS n 1 144 ARG n 1 145 LYS n 1 146 MET n 1 147 TYR n 1 148 ASN n 1 149 ARG n 1 150 PRO n 1 151 HIS n 1 152 ARG n 1 153 ALA n 1 154 PRO n 1 155 ILE n 1 156 THR n 1 157 LYS n 1 158 GLN n 1 159 ASN n 1 160 GLU n 1 161 GLN n 1 162 GLU n 1 163 ALA n 1 164 VAL n 1 165 CYS n 1 166 THR n 1 167 ASP n 1 168 SER n 1 169 HIS n 1 170 THR n 1 171 ASP n 1 172 MET n 1 173 ARG n 1 174 PRO n 1 175 LEU n 1 176 SER n 1 177 GLY n 1 178 GLY n 1 179 LEU n 1 180 ILE n 1 181 ALA n 1 182 PHE n 1 183 SER n 1 184 THR n 1 185 LEU n 1 186 ASP n 1 187 GLY n 1 188 ARG n 1 189 PRO n 1 190 SER n 1 191 ALA n 1 192 HIS n 1 193 ASP n 1 194 PHE n 1 195 ASP n 1 196 ASN n 1 197 SER n 1 198 PRO n 1 199 VAL n 1 200 LEU n 1 201 GLN n 1 202 ASP n 1 203 TRP n 1 204 VAL n 1 205 THR n 1 206 ALA n 1 207 THR n 1 208 ASP n 1 209 ILE n 1 210 ARG n 1 211 VAL n 1 212 ALA n 1 213 PHE n 1 214 SER n 1 215 ARG n 1 216 LEU n 1 217 HIS n 1 218 THR n 1 219 PHE n 1 220 GLY n 1 221 ASP n 1 222 GLU n 1 223 ASN n 1 224 GLU n 1 225 ASP n 1 226 ASP n 1 227 SER n 1 228 GLU n 1 229 LEU n 1 230 ALA n 1 231 ARG n 1 232 ASP n 1 233 SER n 1 234 TYR n 1 235 PHE n 1 236 TYR n 1 237 ALA n 1 238 VAL n 1 239 SER n 1 240 ASP n 1 241 LEU n 1 242 GLN n 1 243 VAL n 1 244 GLY n 1 245 GLY n 1 246 ARG n 1 247 CYS n 1 248 LYS n 1 249 CYS n 1 250 ASN n 1 251 GLY n 1 252 HIS n 1 253 ALA n 1 254 ALA n 1 255 ARG n 1 256 CYS n 1 257 VAL n 1 258 ARG n 1 259 ASP n 1 260 ARG n 1 261 ASP n 1 262 ASP n 1 263 SER n 1 264 LEU n 1 265 VAL n 1 266 CYS n 1 267 ASP n 1 268 CYS n 1 269 ARG n 1 270 HIS n 1 271 ASN n 1 272 THR n 1 273 ALA n 1 274 GLY n 1 275 PRO n 1 276 GLU n 1 277 CYS n 1 278 ASP n 1 279 ARG n 1 280 CYS n 1 281 LYS n 1 282 PRO n 1 283 PHE n 1 284 HIS n 1 285 TYR n 1 286 ASP n 1 287 ARG n 1 288 PRO n 1 289 TRP n 1 290 GLN n 1 291 ARG n 1 292 ALA n 1 293 THR n 1 294 ALA n 1 295 ARG n 1 296 GLU n 1 297 ALA n 1 298 ASN n 1 299 GLU n 1 300 CYS n 1 301 VAL n 1 302 ALA n 1 303 CYS n 1 304 ASN n 1 305 CYS n 1 306 ASN n 1 307 LEU n 1 308 HIS n 1 309 ALA n 1 310 ARG n 1 311 ARG n 1 312 CYS n 1 313 ARG n 1 314 PHE n 1 315 ASN n 1 316 MET n 1 317 GLU n 1 318 LEU n 1 319 TYR n 1 320 LYS n 1 321 LEU n 1 322 SER n 1 323 GLY n 1 324 ARG n 1 325 LYS n 1 326 SER n 1 327 GLY n 1 328 GLY n 1 329 VAL n 1 330 CYS n 1 331 LEU n 1 332 ASN n 1 333 CYS n 1 334 ARG n 1 335 HIS n 1 336 ASN n 1 337 THR n 1 338 ALA n 1 339 GLY n 1 340 ARG n 1 341 HIS n 1 342 CYS n 1 343 HIS n 1 344 TYR n 1 345 CYS n 1 346 LYS n 1 347 GLU n 1 348 GLY n 1 349 TYR n 1 350 TYR n 1 351 ARG n 1 352 ASP n 1 353 MET n 1 354 GLY n 1 355 LYS n 1 356 PRO n 1 357 ILE n 1 358 THR n 1 359 HIS n 1 360 ARG n 1 361 LYS n 1 362 ALA n 1 363 CYS n 1 364 LYS n 1 365 ALA n 1 366 CYS n 1 367 ASP n 1 368 CYS n 1 369 HIS n 1 370 PRO n 1 371 VAL n 1 372 GLY n 1 373 ALA n 1 374 ALA n 1 375 GLY n 1 376 LYS n 1 377 THR n 1 378 CYS n 1 379 ASN n 1 380 GLN n 1 381 THR n 1 382 THR n 1 383 GLY n 1 384 GLN n 1 385 CYS n 1 386 PRO n 1 387 CYS n 1 388 LYS n 1 389 ASP n 1 390 GLY n 1 391 VAL n 1 392 THR n 1 393 GLY n 1 394 ILE n 1 395 THR n 1 396 CYS n 1 397 ASN n 1 398 ARG n 1 399 CYS n 1 400 ALA n 1 401 LYS n 1 402 GLY n 1 403 TYR n 1 404 GLN n 1 405 GLN n 1 406 SER n 1 407 ARG n 1 408 SER n 1 409 PRO n 1 410 ILE n 1 411 ALA n 1 412 PRO n 1 413 CYS n 1 414 ILE n 1 415 LYS n 2 1 MET n 2 2 PRO n 2 3 THR n 2 4 LEU n 2 5 ASP n 2 6 MET n 2 7 ALA n 2 8 LEU n 2 9 PHE n 2 10 ASP n 2 11 TRP n 2 12 THR n 2 13 ASP n 2 14 TYR n 2 15 GLU n 2 16 ASP n 2 17 LEU n 2 18 LYS n 2 19 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 415 Human ? 'NTN1, NTN1L' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? HUMAN 'Homo sapiens' 9606 ? ? ? ? KIDNEY ? ? ? HEK293T '293T/17 [HEK 293T/17] ATCC CRL-11268' ? ? ? ? ? ? ? ? PXLG ? ? 2 1 sample 'Biological sequence' 1 19 Human ? 'DRAXIN, C1orf187, PSEC0258, UNQ3119/PRO10268' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? HUMAN 'Homo sapiens' 9606 ? ? ? ? KIDNEY ? ? ? HEK293T '(HEK 293T/17] ATCC CRL-11268' ? ? ? ? ? ? ? ? PXLG ? ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? 4 4 DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 4 'WURCS=2.0/1,3,2/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 6 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 3 4 3 NAG C1 O1 2 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 39 39 ASP ASP A . n A 1 2 PRO 2 40 40 PRO PRO A . n A 1 3 CYS 3 41 41 CYS CYS A . n A 1 4 SER 4 42 42 SER SER A . n A 1 5 ASP 5 43 43 ASP ASP A . n A 1 6 GLU 6 44 44 GLU GLU A . n A 1 7 ASN 7 45 45 ASN ASN A . n A 1 8 GLY 8 46 46 GLY GLY A . n A 1 9 HIS 9 47 47 HIS HIS A . n A 1 10 PRO 10 48 48 PRO PRO A . n A 1 11 ARG 11 49 49 ARG ARG A . n A 1 12 ARG 12 50 50 ARG ARG A . n A 1 13 CYS 13 51 51 CYS CYS A . n A 1 14 ILE 14 52 52 ILE ILE A . n A 1 15 PRO 15 53 53 PRO PRO A . n A 1 16 ASP 16 54 54 ASP ASP A . n A 1 17 PHE 17 55 55 PHE PHE A . n A 1 18 VAL 18 56 56 VAL VAL A . n A 1 19 ASN 19 57 57 ASN ASN A . n A 1 20 ALA 20 58 58 ALA ALA A . n A 1 21 ALA 21 59 59 ALA ALA A . n A 1 22 PHE 22 60 60 PHE PHE A . n A 1 23 GLY 23 61 61 GLY GLY A . n A 1 24 LYS 24 62 62 LYS LYS A . n A 1 25 ASP 25 63 63 ASP ASP A . n A 1 26 VAL 26 64 64 VAL VAL A . n A 1 27 ARG 27 65 65 ARG ARG A . n A 1 28 VAL 28 66 66 VAL VAL A . n A 1 29 SER 29 67 67 SER SER A . n A 1 30 SER 30 68 68 SER SER A . n A 1 31 THR 31 69 69 THR THR A . n A 1 32 CYS 32 70 70 CYS CYS A . n A 1 33 GLY 33 71 71 GLY GLY A . n A 1 34 ARG 34 72 72 ARG ARG A . n A 1 35 PRO 35 73 73 PRO PRO A . n A 1 36 PRO 36 74 74 PRO PRO A . n A 1 37 ALA 37 75 75 ALA ALA A . n A 1 38 ARG 38 76 76 ARG ARG A . n A 1 39 TYR 39 77 77 TYR TYR A . n A 1 40 CYS 40 78 78 CYS CYS A . n A 1 41 VAL 41 79 79 VAL VAL A . n A 1 42 VAL 42 80 80 VAL VAL A . n A 1 43 SER 43 81 81 SER SER A . n A 1 44 GLU 44 82 82 GLU GLU A . n A 1 45 ARG 45 83 83 ARG ARG A . n A 1 46 GLY 46 84 84 GLY GLY A . n A 1 47 GLU 47 85 85 GLU GLU A . n A 1 48 GLU 48 86 86 GLU GLU A . n A 1 49 ARG 49 87 87 ARG ARG A . n A 1 50 LEU 50 88 88 LEU LEU A . n A 1 51 ARG 51 89 89 ARG ARG A . n A 1 52 SER 52 90 90 SER SER A . n A 1 53 CYS 53 91 91 CYS CYS A . n A 1 54 HIS 54 92 92 HIS HIS A . n A 1 55 LEU 55 93 93 LEU LEU A . n A 1 56 CYS 56 94 94 CYS CYS A . n A 1 57 ASN 57 95 95 ASN ASN A . n A 1 58 ALA 58 96 96 ALA ALA A . n A 1 59 SER 59 97 97 SER SER A . n A 1 60 ASP 60 98 98 ASP ASP A . n A 1 61 PRO 61 99 99 PRO PRO A . n A 1 62 LYS 62 100 100 LYS LYS A . n A 1 63 LYS 63 101 101 LYS LYS A . n A 1 64 ALA 64 102 102 ALA ALA A . n A 1 65 HIS 65 103 103 HIS HIS A . n A 1 66 PRO 66 104 104 PRO PRO A . n A 1 67 PRO 67 105 105 PRO PRO A . n A 1 68 ALA 68 106 106 ALA ALA A . n A 1 69 PHE 69 107 107 PHE PHE A . n A 1 70 LEU 70 108 108 LEU LEU A . n A 1 71 THR 71 109 109 THR THR A . n A 1 72 ASP 72 110 110 ASP ASP A . n A 1 73 LEU 73 111 111 LEU LEU A . n A 1 74 ASN 74 112 112 ASN ASN A . n A 1 75 ASN 75 113 113 ASN ASN A . n A 1 76 PRO 76 114 114 PRO PRO A . n A 1 77 HIS 77 115 115 HIS HIS A . n A 1 78 ASN 78 116 116 ASN ASN A . n A 1 79 LEU 79 117 117 LEU LEU A . n A 1 80 THR 80 118 118 THR THR A . n A 1 81 CYS 81 119 119 CYS CYS A . n A 1 82 TRP 82 120 120 TRP TRP A . n A 1 83 GLN 83 121 121 GLN GLN A . n A 1 84 SER 84 122 122 SER SER A . n A 1 85 GLU 85 123 123 GLU GLU A . n A 1 86 ASN 86 124 124 ASN ASN A . n A 1 87 TYR 87 125 125 TYR TYR A . n A 1 88 LEU 88 126 126 LEU LEU A . n A 1 89 GLN 89 127 127 GLN GLN A . n A 1 90 PHE 90 128 128 PHE PHE A . n A 1 91 PRO 91 129 129 PRO PRO A . n A 1 92 HIS 92 130 130 HIS HIS A . n A 1 93 ASN 93 131 131 ASN ASN A . n A 1 94 VAL 94 132 132 VAL VAL A . n A 1 95 THR 95 133 133 THR THR A . n A 1 96 LEU 96 134 134 LEU LEU A . n A 1 97 THR 97 135 135 THR THR A . n A 1 98 LEU 98 136 136 LEU LEU A . n A 1 99 SER 99 137 137 SER SER A . n A 1 100 LEU 100 138 138 LEU LEU A . n A 1 101 GLY 101 139 139 GLY GLY A . n A 1 102 LYS 102 140 140 LYS LYS A . n A 1 103 LYS 103 141 141 LYS LYS A . n A 1 104 PHE 104 142 142 PHE PHE A . n A 1 105 GLU 105 143 143 GLU GLU A . n A 1 106 VAL 106 144 144 VAL VAL A . n A 1 107 THR 107 145 145 THR THR A . n A 1 108 TYR 108 146 146 TYR TYR A . n A 1 109 VAL 109 147 147 VAL VAL A . n A 1 110 SER 110 148 148 SER SER A . n A 1 111 LEU 111 149 149 LEU LEU A . n A 1 112 GLN 112 150 150 GLN GLN A . n A 1 113 PHE 113 151 151 PHE PHE A . n A 1 114 CYS 114 152 152 CYS CYS A . n A 1 115 SER 115 153 153 SER SER A . n A 1 116 PRO 116 154 154 PRO PRO A . n A 1 117 ARG 117 155 155 ARG ARG A . n A 1 118 PRO 118 156 156 PRO PRO A . n A 1 119 GLU 119 157 157 GLU GLU A . n A 1 120 SER 120 158 158 SER SER A . n A 1 121 MET 121 159 159 MET MET A . n A 1 122 ALA 122 160 160 ALA ALA A . n A 1 123 ILE 123 161 161 ILE ILE A . n A 1 124 TYR 124 162 162 TYR TYR A . n A 1 125 LYS 125 163 163 LYS LYS A . n A 1 126 SER 126 164 164 SER SER A . n A 1 127 MET 127 165 165 MET MET A . n A 1 128 ASP 128 166 166 ASP ASP A . n A 1 129 TYR 129 167 167 TYR TYR A . n A 1 130 GLY 130 168 168 GLY GLY A . n A 1 131 ARG 131 169 169 ARG ARG A . n A 1 132 THR 132 170 170 THR THR A . n A 1 133 TRP 133 171 171 TRP TRP A . n A 1 134 VAL 134 172 172 VAL VAL A . n A 1 135 PRO 135 173 173 PRO PRO A . n A 1 136 PHE 136 174 174 PHE PHE A . n A 1 137 GLN 137 175 175 GLN GLN A . n A 1 138 PHE 138 176 176 PHE PHE A . n A 1 139 TYR 139 177 177 TYR TYR A . n A 1 140 SER 140 178 178 SER SER A . n A 1 141 THR 141 179 179 THR THR A . n A 1 142 GLN 142 180 180 GLN GLN A . n A 1 143 CYS 143 181 181 CYS CYS A . n A 1 144 ARG 144 182 182 ARG ARG A . n A 1 145 LYS 145 183 183 LYS LYS A . n A 1 146 MET 146 184 184 MET MET A . n A 1 147 TYR 147 185 185 TYR TYR A . n A 1 148 ASN 148 186 186 ASN ASN A . n A 1 149 ARG 149 187 187 ARG ARG A . n A 1 150 PRO 150 188 188 PRO PRO A . n A 1 151 HIS 151 189 189 HIS HIS A . n A 1 152 ARG 152 190 190 ARG ARG A . n A 1 153 ALA 153 191 191 ALA ALA A . n A 1 154 PRO 154 192 192 PRO PRO A . n A 1 155 ILE 155 193 193 ILE ILE A . n A 1 156 THR 156 194 194 THR THR A . n A 1 157 LYS 157 195 195 LYS LYS A . n A 1 158 GLN 158 196 196 GLN GLN A . n A 1 159 ASN 159 197 197 ASN ASN A . n A 1 160 GLU 160 198 198 GLU GLU A . n A 1 161 GLN 161 199 199 GLN GLN A . n A 1 162 GLU 162 200 200 GLU GLU A . n A 1 163 ALA 163 201 201 ALA ALA A . n A 1 164 VAL 164 202 202 VAL VAL A . n A 1 165 CYS 165 203 203 CYS CYS A . n A 1 166 THR 166 204 204 THR THR A . n A 1 167 ASP 167 205 205 ASP ASP A . n A 1 168 SER 168 206 206 SER SER A . n A 1 169 HIS 169 207 207 HIS HIS A . n A 1 170 THR 170 208 208 THR THR A . n A 1 171 ASP 171 209 209 ASP ASP A . n A 1 172 MET 172 210 210 MET MET A . n A 1 173 ARG 173 211 211 ARG ARG A . n A 1 174 PRO 174 212 212 PRO PRO A . n A 1 175 LEU 175 213 213 LEU LEU A . n A 1 176 SER 176 214 214 SER SER A . n A 1 177 GLY 177 215 215 GLY GLY A . n A 1 178 GLY 178 216 216 GLY GLY A . n A 1 179 LEU 179 217 217 LEU LEU A . n A 1 180 ILE 180 218 218 ILE ILE A . n A 1 181 ALA 181 219 219 ALA ALA A . n A 1 182 PHE 182 220 220 PHE PHE A . n A 1 183 SER 183 221 221 SER SER A . n A 1 184 THR 184 222 222 THR THR A . n A 1 185 LEU 185 223 223 LEU LEU A . n A 1 186 ASP 186 224 224 ASP ASP A . n A 1 187 GLY 187 225 225 GLY GLY A . n A 1 188 ARG 188 226 226 ARG ARG A . n A 1 189 PRO 189 227 227 PRO PRO A . n A 1 190 SER 190 228 228 SER SER A . n A 1 191 ALA 191 229 229 ALA ALA A . n A 1 192 HIS 192 230 230 HIS HIS A . n A 1 193 ASP 193 231 231 ASP ASP A . n A 1 194 PHE 194 232 232 PHE PHE A . n A 1 195 ASP 195 233 233 ASP ASP A . n A 1 196 ASN 196 234 234 ASN ASN A . n A 1 197 SER 197 235 235 SER SER A . n A 1 198 PRO 198 236 236 PRO PRO A . n A 1 199 VAL 199 237 237 VAL VAL A . n A 1 200 LEU 200 238 238 LEU LEU A . n A 1 201 GLN 201 239 239 GLN GLN A . n A 1 202 ASP 202 240 240 ASP ASP A . n A 1 203 TRP 203 241 241 TRP TRP A . n A 1 204 VAL 204 242 242 VAL VAL A . n A 1 205 THR 205 243 243 THR THR A . n A 1 206 ALA 206 244 244 ALA ALA A . n A 1 207 THR 207 245 245 THR THR A . n A 1 208 ASP 208 246 246 ASP ASP A . n A 1 209 ILE 209 247 247 ILE ILE A . n A 1 210 ARG 210 248 248 ARG ARG A . n A 1 211 VAL 211 249 249 VAL VAL A . n A 1 212 ALA 212 250 250 ALA ALA A . n A 1 213 PHE 213 251 251 PHE PHE A . n A 1 214 SER 214 252 252 SER SER A . n A 1 215 ARG 215 253 253 ARG ARG A . n A 1 216 LEU 216 254 254 LEU LEU A . n A 1 217 HIS 217 255 255 HIS HIS A . n A 1 218 THR 218 256 256 THR THR A . n A 1 219 PHE 219 257 257 PHE PHE A . n A 1 220 GLY 220 258 258 GLY GLY A . n A 1 221 ASP 221 259 259 ASP ASP A . n A 1 222 GLU 222 260 260 GLU GLU A . n A 1 223 ASN 223 261 261 ASN ASN A . n A 1 224 GLU 224 262 262 GLU GLU A . n A 1 225 ASP 225 263 263 ASP ASP A . n A 1 226 ASP 226 264 264 ASP ASP A . n A 1 227 SER 227 265 265 SER SER A . n A 1 228 GLU 228 266 266 GLU GLU A . n A 1 229 LEU 229 267 267 LEU LEU A . n A 1 230 ALA 230 268 268 ALA ALA A . n A 1 231 ARG 231 269 269 ARG ARG A . n A 1 232 ASP 232 270 270 ASP ASP A . n A 1 233 SER 233 271 271 SER SER A . n A 1 234 TYR 234 272 272 TYR TYR A . n A 1 235 PHE 235 273 273 PHE PHE A . n A 1 236 TYR 236 274 274 TYR TYR A . n A 1 237 ALA 237 275 275 ALA ALA A . n A 1 238 VAL 238 276 276 VAL VAL A . n A 1 239 SER 239 277 277 SER SER A . n A 1 240 ASP 240 278 278 ASP ASP A . n A 1 241 LEU 241 279 279 LEU LEU A . n A 1 242 GLN 242 280 280 GLN GLN A . n A 1 243 VAL 243 281 281 VAL VAL A . n A 1 244 GLY 244 282 282 GLY GLY A . n A 1 245 GLY 245 283 283 GLY GLY A . n A 1 246 ARG 246 284 284 ARG ARG A . n A 1 247 CYS 247 285 285 CYS CYS A . n A 1 248 LYS 248 286 286 LYS LYS A . n A 1 249 CYS 249 287 287 CYS CYS A . n A 1 250 ASN 250 288 288 ASN ASN A . n A 1 251 GLY 251 289 289 GLY GLY A . n A 1 252 HIS 252 290 290 HIS HIS A . n A 1 253 ALA 253 291 291 ALA ALA A . n A 1 254 ALA 254 292 292 ALA ALA A . n A 1 255 ARG 255 293 293 ARG ARG A . n A 1 256 CYS 256 294 294 CYS CYS A . n A 1 257 VAL 257 295 295 VAL VAL A . n A 1 258 ARG 258 296 296 ARG ARG A . n A 1 259 ASP 259 297 297 ASP ASP A . n A 1 260 ARG 260 298 298 ARG ARG A . n A 1 261 ASP 261 299 299 ASP ASP A . n A 1 262 ASP 262 300 300 ASP ASP A . n A 1 263 SER 263 301 301 SER SER A . n A 1 264 LEU 264 302 302 LEU LEU A . n A 1 265 VAL 265 303 303 VAL VAL A . n A 1 266 CYS 266 304 304 CYS CYS A . n A 1 267 ASP 267 305 305 ASP ASP A . n A 1 268 CYS 268 306 306 CYS CYS A . n A 1 269 ARG 269 307 307 ARG ARG A . n A 1 270 HIS 270 308 308 HIS HIS A . n A 1 271 ASN 271 309 309 ASN ASN A . n A 1 272 THR 272 310 310 THR THR A . n A 1 273 ALA 273 311 311 ALA ALA A . n A 1 274 GLY 274 312 312 GLY GLY A . n A 1 275 PRO 275 313 313 PRO PRO A . n A 1 276 GLU 276 314 314 GLU GLU A . n A 1 277 CYS 277 315 315 CYS CYS A . n A 1 278 ASP 278 316 316 ASP ASP A . n A 1 279 ARG 279 317 317 ARG ARG A . n A 1 280 CYS 280 318 318 CYS CYS A . n A 1 281 LYS 281 319 319 LYS LYS A . n A 1 282 PRO 282 320 320 PRO PRO A . n A 1 283 PHE 283 321 321 PHE PHE A . n A 1 284 HIS 284 322 322 HIS HIS A . n A 1 285 TYR 285 323 323 TYR TYR A . n A 1 286 ASP 286 324 324 ASP ASP A . n A 1 287 ARG 287 325 325 ARG ARG A . n A 1 288 PRO 288 326 326 PRO PRO A . n A 1 289 TRP 289 327 327 TRP TRP A . n A 1 290 GLN 290 328 328 GLN GLN A . n A 1 291 ARG 291 329 329 ARG ARG A . n A 1 292 ALA 292 330 330 ALA ALA A . n A 1 293 THR 293 331 331 THR THR A . n A 1 294 ALA 294 332 332 ALA ALA A . n A 1 295 ARG 295 333 333 ARG ARG A . n A 1 296 GLU 296 334 334 GLU GLU A . n A 1 297 ALA 297 335 335 ALA ALA A . n A 1 298 ASN 298 336 336 ASN ASN A . n A 1 299 GLU 299 337 337 GLU GLU A . n A 1 300 CYS 300 338 338 CYS CYS A . n A 1 301 VAL 301 339 339 VAL VAL A . n A 1 302 ALA 302 340 340 ALA ALA A . n A 1 303 CYS 303 341 341 CYS CYS A . n A 1 304 ASN 304 342 342 ASN ASN A . n A 1 305 CYS 305 343 343 CYS CYS A . n A 1 306 ASN 306 344 344 ASN ASN A . n A 1 307 LEU 307 345 345 LEU LEU A . n A 1 308 HIS 308 346 346 HIS HIS A . n A 1 309 ALA 309 347 347 ALA ALA A . n A 1 310 ARG 310 348 348 ARG ARG A . n A 1 311 ARG 311 349 349 ARG ARG A . n A 1 312 CYS 312 350 350 CYS CYS A . n A 1 313 ARG 313 351 351 ARG ARG A . n A 1 314 PHE 314 352 352 PHE PHE A . n A 1 315 ASN 315 353 353 ASN ASN A . n A 1 316 MET 316 354 354 MET MET A . n A 1 317 GLU 317 355 355 GLU GLU A . n A 1 318 LEU 318 356 356 LEU LEU A . n A 1 319 TYR 319 357 357 TYR TYR A . n A 1 320 LYS 320 358 358 LYS LYS A . n A 1 321 LEU 321 359 359 LEU LEU A . n A 1 322 SER 322 360 360 SER SER A . n A 1 323 GLY 323 361 361 GLY GLY A . n A 1 324 ARG 324 362 362 ARG ARG A . n A 1 325 LYS 325 363 363 LYS LYS A . n A 1 326 SER 326 364 364 SER SER A . n A 1 327 GLY 327 365 365 GLY GLY A . n A 1 328 GLY 328 366 366 GLY GLY A . n A 1 329 VAL 329 367 367 VAL VAL A . n A 1 330 CYS 330 368 368 CYS CYS A . n A 1 331 LEU 331 369 369 LEU LEU A . n A 1 332 ASN 332 370 370 ASN ASN A . n A 1 333 CYS 333 371 371 CYS CYS A . n A 1 334 ARG 334 372 372 ARG ARG A . n A 1 335 HIS 335 373 373 HIS HIS A . n A 1 336 ASN 336 374 374 ASN ASN A . n A 1 337 THR 337 375 375 THR THR A . n A 1 338 ALA 338 376 376 ALA ALA A . n A 1 339 GLY 339 377 377 GLY GLY A . n A 1 340 ARG 340 378 378 ARG ARG A . n A 1 341 HIS 341 379 379 HIS HIS A . n A 1 342 CYS 342 380 380 CYS CYS A . n A 1 343 HIS 343 381 381 HIS HIS A . n A 1 344 TYR 344 382 382 TYR TYR A . n A 1 345 CYS 345 383 383 CYS CYS A . n A 1 346 LYS 346 384 384 LYS LYS A . n A 1 347 GLU 347 385 385 GLU GLU A . n A 1 348 GLY 348 386 386 GLY GLY A . n A 1 349 TYR 349 387 387 TYR TYR A . n A 1 350 TYR 350 388 388 TYR TYR A . n A 1 351 ARG 351 389 389 ARG ARG A . n A 1 352 ASP 352 390 390 ASP ASP A . n A 1 353 MET 353 391 391 MET MET A . n A 1 354 GLY 354 392 392 GLY GLY A . n A 1 355 LYS 355 393 393 LYS LYS A . n A 1 356 PRO 356 394 394 PRO PRO A . n A 1 357 ILE 357 395 395 ILE ILE A . n A 1 358 THR 358 396 396 THR THR A . n A 1 359 HIS 359 397 397 HIS HIS A . n A 1 360 ARG 360 398 398 ARG ARG A . n A 1 361 LYS 361 399 399 LYS LYS A . n A 1 362 ALA 362 400 400 ALA ALA A . n A 1 363 CYS 363 401 401 CYS CYS A . n A 1 364 LYS 364 402 402 LYS LYS A . n A 1 365 ALA 365 403 403 ALA ALA A . n A 1 366 CYS 366 404 404 CYS CYS A . n A 1 367 ASP 367 405 405 ASP ASP A . n A 1 368 CYS 368 406 406 CYS CYS A . n A 1 369 HIS 369 407 407 HIS HIS A . n A 1 370 PRO 370 408 408 PRO PRO A . n A 1 371 VAL 371 409 409 VAL VAL A . n A 1 372 GLY 372 410 410 GLY GLY A . n A 1 373 ALA 373 411 411 ALA ALA A . n A 1 374 ALA 374 412 412 ALA ALA A . n A 1 375 GLY 375 413 413 GLY GLY A . n A 1 376 LYS 376 414 414 LYS LYS A . n A 1 377 THR 377 415 415 THR THR A . n A 1 378 CYS 378 416 416 CYS CYS A . n A 1 379 ASN 379 417 417 ASN ASN A . n A 1 380 GLN 380 418 418 GLN GLN A . n A 1 381 THR 381 419 419 THR THR A . n A 1 382 THR 382 420 420 THR THR A . n A 1 383 GLY 383 421 421 GLY GLY A . n A 1 384 GLN 384 422 422 GLN GLN A . n A 1 385 CYS 385 423 423 CYS CYS A . n A 1 386 PRO 386 424 424 PRO PRO A . n A 1 387 CYS 387 425 425 CYS CYS A . n A 1 388 LYS 388 426 426 LYS LYS A . n A 1 389 ASP 389 427 427 ASP ASP A . n A 1 390 GLY 390 428 428 GLY GLY A . n A 1 391 VAL 391 429 429 VAL VAL A . n A 1 392 THR 392 430 430 THR THR A . n A 1 393 GLY 393 431 431 GLY GLY A . n A 1 394 ILE 394 432 432 ILE ILE A . n A 1 395 THR 395 433 433 THR THR A . n A 1 396 CYS 396 434 434 CYS CYS A . n A 1 397 ASN 397 435 435 ASN ASN A . n A 1 398 ARG 398 436 436 ARG ARG A . n A 1 399 CYS 399 437 437 CYS CYS A . n A 1 400 ALA 400 438 438 ALA ALA A . n A 1 401 LYS 401 439 439 LYS LYS A . n A 1 402 GLY 402 440 440 GLY GLY A . n A 1 403 TYR 403 441 441 TYR TYR A . n A 1 404 GLN 404 442 442 GLN GLN A . n A 1 405 GLN 405 443 443 GLN GLN A . n A 1 406 SER 406 444 444 SER SER A . n A 1 407 ARG 407 445 445 ARG ARG A . n A 1 408 SER 408 446 446 SER SER A . n A 1 409 PRO 409 447 447 PRO PRO A . n A 1 410 ILE 410 448 448 ILE ILE A . n A 1 411 ALA 411 449 449 ALA ALA A . n A 1 412 PRO 412 450 450 PRO PRO A . n A 1 413 CYS 413 451 451 CYS CYS A . n A 1 414 ILE 414 452 452 ILE ILE A . n A 1 415 LYS 415 453 453 LYS LYS A . n B 2 1 MET 1 225 225 MET MET B . n B 2 2 PRO 2 226 226 PRO PRO B . n B 2 3 THR 3 227 227 THR THR B . n B 2 4 LEU 4 228 228 LEU LEU B . n B 2 5 ASP 5 229 229 ASP ASP B . n B 2 6 MET 6 230 230 MET MET B . n B 2 7 ALA 7 231 231 ALA ALA B . n B 2 8 LEU 8 232 232 LEU LEU B . n B 2 9 PHE 9 233 233 PHE PHE B . n B 2 10 ASP 10 234 234 ASP ASP B . n B 2 11 TRP 11 235 235 TRP TRP B . n B 2 12 THR 12 236 236 THR THR B . n B 2 13 ASP 13 237 237 ASP ASP B . n B 2 14 TYR 14 238 238 TYR TYR B . n B 2 15 GLU 15 239 239 GLU GLU B . n B 2 16 ASP 16 240 240 ASP ASP B . n B 2 17 LEU 17 241 241 LEU LEU B . n B 2 18 LYS 18 242 242 LYS LYS B . n B 2 19 PRO 19 243 243 PRO PRO B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 C NAG 1 A NAG 501 n C 3 NAG 2 C NAG 2 A NAG 502 n D 4 NAG 1 D NAG 1 A NAG 503 n D 4 NAG 2 D NAG 2 A NAG 504 n D 4 NAG 3 D NAG 3 A NAG 505 n E 3 NAG 1 E NAG 1 A NAG 506 n E 3 NAG 2 E NAG 2 A NAG 507 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CA 1 508 508 CA CA A . G 6 SO4 1 509 509 SO4 SO4 A . H 6 SO4 1 510 510 SO4 SO4 A . I 6 SO4 1 511 511 SO4 SO4 A . J 6 SO4 1 512 512 SO4 SO4 A . K 6 SO4 1 513 513 SO4 SO4 A . L 6 SO4 1 514 514 SO4 SO4 A . M 6 SO4 1 515 515 SO4 SO4 A . N 6 SO4 1 516 516 SO4 SO4 A . O 6 SO4 1 517 517 SO4 SO4 A . P 6 SO4 1 518 518 SO4 SO4 A . Q 7 GOL 1 519 519 GOL GOL A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 3.3.22 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6FKQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 130.794 _cell.length_a_esd ? _cell.length_b 130.794 _cell.length_b_esd ? _cell.length_c 183.870 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6FKQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.62 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 73.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.6 M AMMONIUM SULPHATE AND 0.1 M SODIUM CITRATE, AT PH 4 TO PH 5, VAPOR DIFFUSION, TEMPERATURE 298K ; _exptl_crystal_grow.pdbx_pH_range 4-5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-09-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6FKQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.070 _reflns.d_resolution_low 54.130 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18063 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 32.90 _reflns.pdbx_Rmerge_I_obs 0.58700 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.7000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.07 _reflns_shell.d_res_low 3.23 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.89700 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 18.60 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 2.42000 _refine.aniso_B[1][2] 1.21000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][2] 2.42000 _refine.aniso_B[2][3] 0.00000 _refine.aniso_B[3][3] -7.84000 _refine.B_iso_max ? _refine.B_iso_mean 76.42 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.908 _refine.correlation_coeff_Fo_to_Fc_free 0.866 _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6FKQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.07 _refine.ls_d_res_low 54.01 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17128 _refine.ls_number_reflns_R_free 874 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.237 _refine.ls_R_factor_R_free 0.271 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.235 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4URT _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.826 _refine.pdbx_overall_ESU_R_Free 0.387 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 23.425 _refine.overall_SU_ML 0.375 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3420 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 155 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3575 _refine_hist.d_res_high 3.07 _refine_hist.d_res_low 54.01 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 0.019 3684 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 3250 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.881 1.982 4993 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.744 3.000 7507 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 8.003 5.000 432 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.405 22.753 178 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 18.113 15.000 568 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.203 15.000 37 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.094 0.200 532 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.021 4087 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.023 0.020 874 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 4.394 7.334 1736 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 4.381 7.331 1735 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 7.186 10.994 2164 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 7.185 10.998 2165 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.887 7.987 1948 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.886 7.987 1948 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 7.436 11.789 2830 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 11.160 87.838 3929 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 11.160 87.834 3929 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.07 _refine_ls_shell.d_res_low 3.15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.number_reflns_R_work 1222 _refine_ls_shell.percent_reflns_obs 99.30 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3380 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3950 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _database_PDB_matrix.entry_id 6FKQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 6FKQ _struct.title 'THE CRYSTAL STRUCTURE OF A FRAGMENT OF NETRIN-1 IN COMPLEX WITH A FRAGMENT OF DRAXIN' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6FKQ _struct_keywords.text 'AXON GUIDANCE CUE, NETRIN-1, DRAXIN, COMMISSURAL NEURON, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? P N N 6 ? Q N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP NET1_HUMAN O95631 ? 1 ;DPCSDENGHPRRCIPDFVNAAFGKDVRVSSTCGRPPARYCVVSERGEERLRSCHLCNASDPKKAHPPAFLTDLNNPHNLT CWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPITKQNE QEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENEDDSELARDSYFYAVSD LQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACNCNLHARRCRFNMELYK LSGRKSGGVCLNCRHNTAGRHCHYCKEGYYRDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQCPCKDGVTGITCNRCA KGYQQSRSPIAPCIK ; 39 2 UNP DRAXI_HUMAN Q8NBI3 ? 2 MPTLDMALFDWTDYEDLKP 225 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6FKQ A 1 ? 415 ? O95631 39 ? 453 ? 39 453 2 2 6FKQ B 1 ? 19 ? Q8NBI3 225 ? 243 ? 225 243 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4220 ? 1 MORE -98 ? 1 'SSA (A^2)' 25880 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 60 ? ALA A 64 ? ASP A 98 ALA A 102 5 ? 5 HELX_P HELX_P2 AA2 PRO A 67 ? ASP A 72 ? PRO A 105 ASP A 110 1 ? 6 HELX_P HELX_P3 AA3 GLN A 142 ? ASN A 148 ? GLN A 180 ASN A 186 1 ? 7 HELX_P HELX_P4 AA4 THR A 156 ? GLU A 160 ? THR A 194 GLU A 198 5 ? 5 HELX_P HELX_P5 AA5 ASP A 193 ? ASN A 196 ? ASP A 231 ASN A 234 5 ? 4 HELX_P HELX_P6 AA6 SER A 197 ? VAL A 204 ? SER A 235 VAL A 242 1 ? 8 HELX_P HELX_P7 AA7 ASP A 226 ? ASP A 232 ? ASP A 264 ASP A 270 1 ? 7 HELX_P HELX_P8 AA8 ASN A 315 ? SER A 322 ? ASN A 353 SER A 360 1 ? 8 HELX_P HELX_P9 AA9 TYR B 14 ? LYS B 18 ? TYR B 238 LYS B 242 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 41 A CYS 51 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf2 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 56 SG ? ? A CYS 70 A CYS 94 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf3 disulf ? ? A CYS 40 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 78 A CYS 91 1_555 ? ? ? ? ? ? ? 2.069 ? ? disulf4 disulf ? ? A CYS 81 SG ? ? ? 1_555 A CYS 114 SG ? ? A CYS 119 A CYS 152 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf5 disulf ? ? A CYS 143 SG ? ? ? 1_555 A CYS 165 SG ? ? A CYS 181 A CYS 203 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf6 disulf ? ? A CYS 247 SG ? ? ? 1_555 A CYS 256 SG ? ? A CYS 285 A CYS 294 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf7 disulf ? ? A CYS 249 SG ? ? ? 1_555 A CYS 266 SG ? ? A CYS 287 A CYS 304 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf8 disulf ? ? A CYS 268 SG ? ? ? 1_555 A CYS 277 SG ? ? A CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf9 disulf ? ? A CYS 280 SG ? ? ? 1_555 A CYS 300 SG ? ? A CYS 318 A CYS 338 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf10 disulf ? ? A CYS 303 SG ? ? ? 1_555 A CYS 312 SG ? ? A CYS 341 A CYS 350 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf11 disulf ? ? A CYS 305 SG ? ? ? 1_555 A CYS 330 SG ? ? A CYS 343 A CYS 368 1_555 ? ? ? ? ? ? ? 2.009 ? ? disulf12 disulf ? ? A CYS 333 SG ? ? ? 1_555 A CYS 342 SG ? ? A CYS 371 A CYS 380 1_555 ? ? ? ? ? ? ? 2.002 ? ? disulf13 disulf ? ? A CYS 345 SG ? ? ? 1_555 A CYS 363 SG ? ? A CYS 383 A CYS 401 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf14 disulf ? ? A CYS 366 SG ? ? ? 1_555 A CYS 378 SG ? ? A CYS 404 A CYS 416 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf15 disulf ? ? A CYS 368 SG ? ? ? 1_555 A CYS 385 SG ? ? A CYS 406 A CYS 423 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf16 disulf ? ? A CYS 387 SG ? ? ? 1_555 A CYS 396 SG ? ? A CYS 425 A CYS 434 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf17 disulf ? ? A CYS 399 SG ? ? ? 1_555 A CYS 413 SG ? ? A CYS 437 A CYS 451 1_555 ? ? ? ? ? ? ? 2.057 ? ? covale1 covale none ? A ARG 27 NH2 ? ? ? 1_555 I SO4 . O3 ? ? A ARG 65 A SO4 511 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale2 covale one ? A ASN 57 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 95 C NAG 1 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation covale3 covale one ? A ASP 60 CB ? ? ? 1_555 C NAG . O6 ? ? A ASP 98 C NAG 1 1_555 ? ? ? ? ? ? ? 1.367 ? ? covale4 covale one ? A ASN 78 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 116 D NAG 1 1_555 ? ? ? ? ? ? ? 1.456 ? N-Glycosylation covale5 covale one ? A ASN 93 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 131 E NAG 1 1_555 ? ? ? ? ? ? ? 1.306 ? N-Glycosylation covale6 covale none ? A ARG 117 NH2 ? ? ? 1_555 G SO4 . O4 ? ? A ARG 155 A SO4 509 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale7 covale none ? A ARG 210 NH2 ? ? ? 1_555 I SO4 . O1 ? ? A ARG 248 A SO4 511 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale8 covale none ? A ARG 398 NH2 ? ? ? 1_555 L SO4 . O1 ? ? A ARG 436 A SO4 514 1_555 ? ? ? ? ? ? ? 1.415 ? ? covale9 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale10 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.480 ? ? covale11 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 2 D NAG 3 1_555 ? ? ? ? ? ? ? 1.479 ? ? covale12 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.421 ? ? metalc1 metalc ? ? A PHE 69 O ? ? ? 1_555 F CA . CA ? ? A PHE 107 A CA 508 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc2 metalc ? ? A ASP 72 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 110 A CA 508 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc3 metalc ? ? A ASN 74 OD1 ? ? ? 1_555 F CA . CA ? ? A ASN 112 A CA 508 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc4 metalc ? ? A THR 80 O ? ? ? 1_555 F CA . CA ? ? A THR 118 A CA 508 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc5 metalc ? ? A THR 80 OG1 ? ? ? 1_555 F CA . CA ? ? A THR 118 A CA 508 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc6 metalc ? ? A SER 239 O ? ? ? 1_555 F CA . CA ? ? A SER 277 A CA 508 1_555 ? ? ? ? ? ? ? 2.269 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 69 ? A PHE 107 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 OD1 ? A ASP 72 ? A ASP 110 ? 1_555 72.7 ? 2 O ? A PHE 69 ? A PHE 107 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 OD1 ? A ASN 74 ? A ASN 112 ? 1_555 148.9 ? 3 OD1 ? A ASP 72 ? A ASP 110 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 OD1 ? A ASN 74 ? A ASN 112 ? 1_555 106.5 ? 4 O ? A PHE 69 ? A PHE 107 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A THR 80 ? A THR 118 ? 1_555 78.7 ? 5 OD1 ? A ASP 72 ? A ASP 110 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A THR 80 ? A THR 118 ? 1_555 128.1 ? 6 OD1 ? A ASN 74 ? A ASN 112 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A THR 80 ? A THR 118 ? 1_555 119.7 ? 7 O ? A PHE 69 ? A PHE 107 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 OG1 ? A THR 80 ? A THR 118 ? 1_555 87.6 ? 8 OD1 ? A ASP 72 ? A ASP 110 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 OG1 ? A THR 80 ? A THR 118 ? 1_555 76.5 ? 9 OD1 ? A ASN 74 ? A ASN 112 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 OG1 ? A THR 80 ? A THR 118 ? 1_555 122.9 ? 10 O ? A THR 80 ? A THR 118 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 OG1 ? A THR 80 ? A THR 118 ? 1_555 59.6 ? 11 O ? A PHE 69 ? A PHE 107 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A SER 239 ? A SER 277 ? 1_555 79.8 ? 12 OD1 ? A ASP 72 ? A ASP 110 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A SER 239 ? A SER 277 ? 1_555 132.4 ? 13 OD1 ? A ASN 74 ? A ASN 112 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A SER 239 ? A SER 277 ? 1_555 78.8 ? 14 O ? A THR 80 ? A THR 118 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A SER 239 ? A SER 277 ? 1_555 81.5 ? 15 OG1 ? A THR 80 ? A THR 118 ? 1_555 CA ? F CA . ? A CA 508 ? 1_555 O ? A SER 239 ? A SER 277 ? 1_555 140.8 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 34 A . ? ARG 72 A PRO 35 A ? PRO 73 A 1 -10.37 2 PHE 90 A . ? PHE 128 A PRO 91 A ? PRO 129 A 1 -9.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? C ? 3 ? D ? 2 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 37 ? ARG A 45 ? ALA A 75 ARG A 83 A 2 GLU A 48 ? CYS A 56 ? GLU A 86 CYS A 94 B 1 VAL A 94 ? SER A 99 ? VAL A 132 SER A 137 B 2 ASP A 208 ? PHE A 213 ? ASP A 246 PHE A 251 B 3 SER A 120 ? SER A 126 ? SER A 158 SER A 164 B 4 VAL A 134 ? SER A 140 ? VAL A 172 SER A 178 C 1 LEU A 179 ? SER A 183 ? LEU A 217 SER A 221 C 2 PHE A 104 ? GLN A 112 ? PHE A 142 GLN A 150 C 3 ASP A 240 ? CYS A 247 ? ASP A 278 CYS A 285 D 1 ARG A 311 ? PHE A 314 ? ARG A 349 PHE A 352 D 2 GLY A 328 ? LEU A 331 ? GLY A 366 LEU A 369 E 1 TYR A 349 ? ARG A 351 ? TYR A 387 ARG A 389 E 2 CYS A 363 ? ALA A 365 ? CYS A 401 ALA A 403 F 1 ALA A 253 ? ARG A 258 ? ALA A 291 ARG A 296 F 2 LEU A 264 ? CYS A 268 ? LEU A 302 CYS A 306 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O7 D NAG 3 ? ? O2 A SO4 516 ? ? 1.11 2 1 ND2 A ASN 131 ? ? O5 E NAG 1 ? ? 1.93 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 65 ? ? CZ A ARG 65 ? ? NH1 A ARG 65 ? ? 123.51 120.30 3.21 0.50 N 2 1 NE A ARG 65 ? ? CZ A ARG 65 ? ? NH2 A ARG 65 ? ? 116.24 120.30 -4.06 0.50 N 3 1 C A PHE 128 ? ? N A PRO 129 ? ? CD A PRO 129 ? ? 137.31 120.60 16.71 2.20 Y 4 1 NE A ARG 182 ? ? CZ A ARG 182 ? ? NH1 A ARG 182 ? ? 123.77 120.30 3.47 0.50 N 5 1 C A ARG 211 ? ? N A PRO 212 ? ? CA A PRO 212 ? ? 109.07 119.30 -10.23 1.50 Y 6 1 CA A CYS 338 ? ? CB A CYS 338 ? ? SG A CYS 338 ? ? 121.51 114.20 7.31 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 103 ? ? -144.55 59.10 2 1 ASN A 116 ? ? -150.47 64.71 3 1 HIS A 130 ? ? -30.58 124.67 4 1 TYR A 167 ? ? 60.64 -128.94 5 1 ARG A 190 ? ? 31.46 49.52 6 1 ASP A 259 ? ? -91.25 -73.30 7 1 GLU A 260 ? ? 54.92 77.65 8 1 ASP A 264 ? ? -65.40 0.39 9 1 ASP A 270 ? ? -69.35 4.75 10 1 CYS A 287 ? ? -31.99 137.46 11 1 ASP A 297 ? ? -121.71 -165.23 12 1 PRO A 320 ? ? -37.83 136.61 13 1 HIS A 373 ? ? 73.97 37.70 14 1 ASP A 390 ? ? -68.96 99.25 15 1 MET A 391 ? ? -63.01 -177.41 16 1 LYS A 399 ? ? -118.18 58.61 17 1 ASP A 405 ? ? 52.91 77.49 18 1 THR A 420 ? ? 78.95 -12.38 19 1 ARG A 436 ? ? -173.83 142.09 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLY _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 168 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ARG _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 169 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -143.66 # _pdbx_molecule_features.prd_id PRD_900017 _pdbx_molecule_features.name triacetyl-beta-chitotriose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900017 _pdbx_molecule.asym_id D # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 ILE N N N N 173 ILE CA C N S 174 ILE C C N N 175 ILE O O N N 176 ILE CB C N S 177 ILE CG1 C N N 178 ILE CG2 C N N 179 ILE CD1 C N N 180 ILE OXT O N N 181 ILE H H N N 182 ILE H2 H N N 183 ILE HA H N N 184 ILE HB H N N 185 ILE HG12 H N N 186 ILE HG13 H N N 187 ILE HG21 H N N 188 ILE HG22 H N N 189 ILE HG23 H N N 190 ILE HD11 H N N 191 ILE HD12 H N N 192 ILE HD13 H N N 193 ILE HXT H N N 194 LEU N N N N 195 LEU CA C N S 196 LEU C C N N 197 LEU O O N N 198 LEU CB C N N 199 LEU CG C N N 200 LEU CD1 C N N 201 LEU CD2 C N N 202 LEU OXT O N N 203 LEU H H N N 204 LEU H2 H N N 205 LEU HA H N N 206 LEU HB2 H N N 207 LEU HB3 H N N 208 LEU HG H N N 209 LEU HD11 H N N 210 LEU HD12 H N N 211 LEU HD13 H N N 212 LEU HD21 H N N 213 LEU HD22 H N N 214 LEU HD23 H N N 215 LEU HXT H N N 216 LYS N N N N 217 LYS CA C N S 218 LYS C C N N 219 LYS O O N N 220 LYS CB C N N 221 LYS CG C N N 222 LYS CD C N N 223 LYS CE C N N 224 LYS NZ N N N 225 LYS OXT O N N 226 LYS H H N N 227 LYS H2 H N N 228 LYS HA H N N 229 LYS HB2 H N N 230 LYS HB3 H N N 231 LYS HG2 H N N 232 LYS HG3 H N N 233 LYS HD2 H N N 234 LYS HD3 H N N 235 LYS HE2 H N N 236 LYS HE3 H N N 237 LYS HZ1 H N N 238 LYS HZ2 H N N 239 LYS HZ3 H N N 240 LYS HXT H N N 241 MET N N N N 242 MET CA C N S 243 MET C C N N 244 MET O O N N 245 MET CB C N N 246 MET CG C N N 247 MET SD S N N 248 MET CE C N N 249 MET OXT O N N 250 MET H H N N 251 MET H2 H N N 252 MET HA H N N 253 MET HB2 H N N 254 MET HB3 H N N 255 MET HG2 H N N 256 MET HG3 H N N 257 MET HE1 H N N 258 MET HE2 H N N 259 MET HE3 H N N 260 MET HXT H N N 261 NAG C1 C N R 262 NAG C2 C N R 263 NAG C3 C N R 264 NAG C4 C N S 265 NAG C5 C N R 266 NAG C6 C N N 267 NAG C7 C N N 268 NAG C8 C N N 269 NAG N2 N N N 270 NAG O1 O N N 271 NAG O3 O N N 272 NAG O4 O N N 273 NAG O5 O N N 274 NAG O6 O N N 275 NAG O7 O N N 276 NAG H1 H N N 277 NAG H2 H N N 278 NAG H3 H N N 279 NAG H4 H N N 280 NAG H5 H N N 281 NAG H61 H N N 282 NAG H62 H N N 283 NAG H81 H N N 284 NAG H82 H N N 285 NAG H83 H N N 286 NAG HN2 H N N 287 NAG HO1 H N N 288 NAG HO3 H N N 289 NAG HO4 H N N 290 NAG HO6 H N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 SO4 S S N N 346 SO4 O1 O N N 347 SO4 O2 O N N 348 SO4 O3 O N N 349 SO4 O4 O N N 350 THR N N N N 351 THR CA C N S 352 THR C C N N 353 THR O O N N 354 THR CB C N R 355 THR OG1 O N N 356 THR CG2 C N N 357 THR OXT O N N 358 THR H H N N 359 THR H2 H N N 360 THR HA H N N 361 THR HB H N N 362 THR HG1 H N N 363 THR HG21 H N N 364 THR HG22 H N N 365 THR HG23 H N N 366 THR HXT H N N 367 TRP N N N N 368 TRP CA C N S 369 TRP C C N N 370 TRP O O N N 371 TRP CB C N N 372 TRP CG C Y N 373 TRP CD1 C Y N 374 TRP CD2 C Y N 375 TRP NE1 N Y N 376 TRP CE2 C Y N 377 TRP CE3 C Y N 378 TRP CZ2 C Y N 379 TRP CZ3 C Y N 380 TRP CH2 C Y N 381 TRP OXT O N N 382 TRP H H N N 383 TRP H2 H N N 384 TRP HA H N N 385 TRP HB2 H N N 386 TRP HB3 H N N 387 TRP HD1 H N N 388 TRP HE1 H N N 389 TRP HE3 H N N 390 TRP HZ2 H N N 391 TRP HZ3 H N N 392 TRP HH2 H N N 393 TRP HXT H N N 394 TYR N N N N 395 TYR CA C N S 396 TYR C C N N 397 TYR O O N N 398 TYR CB C N N 399 TYR CG C Y N 400 TYR CD1 C Y N 401 TYR CD2 C Y N 402 TYR CE1 C Y N 403 TYR CE2 C Y N 404 TYR CZ C Y N 405 TYR OH O N N 406 TYR OXT O N N 407 TYR H H N N 408 TYR H2 H N N 409 TYR HA H N N 410 TYR HB2 H N N 411 TYR HB3 H N N 412 TYR HD1 H N N 413 TYR HD2 H N N 414 TYR HE1 H N N 415 TYR HE2 H N N 416 TYR HH H N N 417 TYR HXT H N N 418 VAL N N N N 419 VAL CA C N S 420 VAL C C N N 421 VAL O O N N 422 VAL CB C N N 423 VAL CG1 C N N 424 VAL CG2 C N N 425 VAL OXT O N N 426 VAL H H N N 427 VAL H2 H N N 428 VAL HA H N N 429 VAL HB H N N 430 VAL HG11 H N N 431 VAL HG12 H N N 432 VAL HG13 H N N 433 VAL HG21 H N N 434 VAL HG22 H N N 435 VAL HG23 H N N 436 VAL HXT H N N 437 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 ILE N CA sing N N 163 ILE N H sing N N 164 ILE N H2 sing N N 165 ILE CA C sing N N 166 ILE CA CB sing N N 167 ILE CA HA sing N N 168 ILE C O doub N N 169 ILE C OXT sing N N 170 ILE CB CG1 sing N N 171 ILE CB CG2 sing N N 172 ILE CB HB sing N N 173 ILE CG1 CD1 sing N N 174 ILE CG1 HG12 sing N N 175 ILE CG1 HG13 sing N N 176 ILE CG2 HG21 sing N N 177 ILE CG2 HG22 sing N N 178 ILE CG2 HG23 sing N N 179 ILE CD1 HD11 sing N N 180 ILE CD1 HD12 sing N N 181 ILE CD1 HD13 sing N N 182 ILE OXT HXT sing N N 183 LEU N CA sing N N 184 LEU N H sing N N 185 LEU N H2 sing N N 186 LEU CA C sing N N 187 LEU CA CB sing N N 188 LEU CA HA sing N N 189 LEU C O doub N N 190 LEU C OXT sing N N 191 LEU CB CG sing N N 192 LEU CB HB2 sing N N 193 LEU CB HB3 sing N N 194 LEU CG CD1 sing N N 195 LEU CG CD2 sing N N 196 LEU CG HG sing N N 197 LEU CD1 HD11 sing N N 198 LEU CD1 HD12 sing N N 199 LEU CD1 HD13 sing N N 200 LEU CD2 HD21 sing N N 201 LEU CD2 HD22 sing N N 202 LEU CD2 HD23 sing N N 203 LEU OXT HXT sing N N 204 LYS N CA sing N N 205 LYS N H sing N N 206 LYS N H2 sing N N 207 LYS CA C sing N N 208 LYS CA CB sing N N 209 LYS CA HA sing N N 210 LYS C O doub N N 211 LYS C OXT sing N N 212 LYS CB CG sing N N 213 LYS CB HB2 sing N N 214 LYS CB HB3 sing N N 215 LYS CG CD sing N N 216 LYS CG HG2 sing N N 217 LYS CG HG3 sing N N 218 LYS CD CE sing N N 219 LYS CD HD2 sing N N 220 LYS CD HD3 sing N N 221 LYS CE NZ sing N N 222 LYS CE HE2 sing N N 223 LYS CE HE3 sing N N 224 LYS NZ HZ1 sing N N 225 LYS NZ HZ2 sing N N 226 LYS NZ HZ3 sing N N 227 LYS OXT HXT sing N N 228 MET N CA sing N N 229 MET N H sing N N 230 MET N H2 sing N N 231 MET CA C sing N N 232 MET CA CB sing N N 233 MET CA HA sing N N 234 MET C O doub N N 235 MET C OXT sing N N 236 MET CB CG sing N N 237 MET CB HB2 sing N N 238 MET CB HB3 sing N N 239 MET CG SD sing N N 240 MET CG HG2 sing N N 241 MET CG HG3 sing N N 242 MET SD CE sing N N 243 MET CE HE1 sing N N 244 MET CE HE2 sing N N 245 MET CE HE3 sing N N 246 MET OXT HXT sing N N 247 NAG C1 C2 sing N N 248 NAG C1 O1 sing N N 249 NAG C1 O5 sing N N 250 NAG C1 H1 sing N N 251 NAG C2 C3 sing N N 252 NAG C2 N2 sing N N 253 NAG C2 H2 sing N N 254 NAG C3 C4 sing N N 255 NAG C3 O3 sing N N 256 NAG C3 H3 sing N N 257 NAG C4 C5 sing N N 258 NAG C4 O4 sing N N 259 NAG C4 H4 sing N N 260 NAG C5 C6 sing N N 261 NAG C5 O5 sing N N 262 NAG C5 H5 sing N N 263 NAG C6 O6 sing N N 264 NAG C6 H61 sing N N 265 NAG C6 H62 sing N N 266 NAG C7 C8 sing N N 267 NAG C7 N2 sing N N 268 NAG C7 O7 doub N N 269 NAG C8 H81 sing N N 270 NAG C8 H82 sing N N 271 NAG C8 H83 sing N N 272 NAG N2 HN2 sing N N 273 NAG O1 HO1 sing N N 274 NAG O3 HO3 sing N N 275 NAG O4 HO4 sing N N 276 NAG O6 HO6 sing N N 277 PHE N CA sing N N 278 PHE N H sing N N 279 PHE N H2 sing N N 280 PHE CA C sing N N 281 PHE CA CB sing N N 282 PHE CA HA sing N N 283 PHE C O doub N N 284 PHE C OXT sing N N 285 PHE CB CG sing N N 286 PHE CB HB2 sing N N 287 PHE CB HB3 sing N N 288 PHE CG CD1 doub Y N 289 PHE CG CD2 sing Y N 290 PHE CD1 CE1 sing Y N 291 PHE CD1 HD1 sing N N 292 PHE CD2 CE2 doub Y N 293 PHE CD2 HD2 sing N N 294 PHE CE1 CZ doub Y N 295 PHE CE1 HE1 sing N N 296 PHE CE2 CZ sing Y N 297 PHE CE2 HE2 sing N N 298 PHE CZ HZ sing N N 299 PHE OXT HXT sing N N 300 PRO N CA sing N N 301 PRO N CD sing N N 302 PRO N H sing N N 303 PRO CA C sing N N 304 PRO CA CB sing N N 305 PRO CA HA sing N N 306 PRO C O doub N N 307 PRO C OXT sing N N 308 PRO CB CG sing N N 309 PRO CB HB2 sing N N 310 PRO CB HB3 sing N N 311 PRO CG CD sing N N 312 PRO CG HG2 sing N N 313 PRO CG HG3 sing N N 314 PRO CD HD2 sing N N 315 PRO CD HD3 sing N N 316 PRO OXT HXT sing N N 317 SER N CA sing N N 318 SER N H sing N N 319 SER N H2 sing N N 320 SER CA C sing N N 321 SER CA CB sing N N 322 SER CA HA sing N N 323 SER C O doub N N 324 SER C OXT sing N N 325 SER CB OG sing N N 326 SER CB HB2 sing N N 327 SER CB HB3 sing N N 328 SER OG HG sing N N 329 SER OXT HXT sing N N 330 SO4 S O1 doub N N 331 SO4 S O2 doub N N 332 SO4 S O3 sing N N 333 SO4 S O4 sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # _pdbx_audit_support.funding_organization 'Marie Curie CoFUND' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 4 NAG 1 n 4 NAG 2 n 4 NAG 3 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4URT _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6FKQ _atom_sites.fract_transf_matrix[1][1] 0.007646 _atom_sites.fract_transf_matrix[1][2] 0.004414 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008828 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005439 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_