HEADER HYDROLASE 25-JAN-18 6FL1 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE LACTOCOCCUS LACTIS FPG TITLE 2 MUTANT T221P AND A FAPY-DG CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*TP*TP(FOX)P*TP*TP*TP*CP*TP*CP*G)- COMPND 3 3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; COMPND 12 CHAIN: A; COMPND 13 SYNONYM: FAPY-DNA GLYCOSYLASE,DNA-(APURINIC OR APYRIMIDINIC SITE) COMPND 14 LYASE MUTM,AP LYASE MUTM; COMPND 15 EC: 3.2.2.23,4.2.99.18; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 11 ORGANISM_COMMON: STREPTOCOCCUS CREMORIS; SOURCE 12 ORGANISM_TAXID: 1359; SOURCE 13 GENE: MUTM, FPG, NCDO763_0992; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, GLYCOSYLASE, FAPY LESION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,B.CASTAING,M.OBER,T.CARELL REVDAT 2 17-JAN-24 6FL1 1 REMARK REVDAT 1 06-FEB-19 6FL1 0 JRNL AUTH F.COSTE,B.CASTAING,M.OBER,T.CARELL JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE LACTOCOCCUS JRNL TITL 2 LACTIS FPG MUTANT T221P AND A FAPY-DG CONTAINING DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.240 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 78143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 7449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7562 - 4.9711 0.98 4715 241 0.1568 0.1590 REMARK 3 2 4.9711 - 3.9463 1.00 4754 292 0.1191 0.1360 REMARK 3 3 3.9463 - 3.4476 1.00 4778 254 0.1359 0.1449 REMARK 3 4 3.4476 - 3.1325 1.00 4783 249 0.1554 0.1609 REMARK 3 5 3.1325 - 2.9080 1.00 4765 287 0.1804 0.2218 REMARK 3 6 2.9080 - 2.7365 1.00 4793 230 0.1850 0.1661 REMARK 3 7 2.7365 - 2.5995 1.00 4797 238 0.1819 0.2266 REMARK 3 8 2.5995 - 2.4864 1.00 4753 260 0.1722 0.1835 REMARK 3 9 2.4864 - 2.3906 1.00 4794 245 0.1599 0.1887 REMARK 3 10 2.3906 - 2.3081 1.00 4775 261 0.1614 0.1638 REMARK 3 11 2.3081 - 2.2360 1.00 4783 257 0.1584 0.1704 REMARK 3 12 2.2360 - 2.1721 1.00 4731 288 0.1514 0.1668 REMARK 3 13 2.1721 - 2.1149 1.00 4820 241 0.1583 0.1854 REMARK 3 14 2.1149 - 2.0633 1.00 4763 248 0.1680 0.1977 REMARK 3 15 2.0633 - 2.0164 1.00 4748 306 0.1702 0.1971 REMARK 3 16 2.0164 - 1.9735 1.00 4720 259 0.1684 0.1640 REMARK 3 17 1.9735 - 1.9340 1.00 4794 271 0.1587 0.1835 REMARK 3 18 1.9340 - 1.8975 1.00 4719 290 0.1637 0.1887 REMARK 3 19 1.8975 - 1.8636 1.00 4768 265 0.1768 0.2075 REMARK 3 20 1.8636 - 1.8320 1.00 4777 262 0.1907 0.2122 REMARK 3 21 1.8320 - 1.8025 1.00 4777 237 0.1910 0.2043 REMARK 3 22 1.8025 - 1.7747 1.00 4795 223 0.1826 0.1884 REMARK 3 23 1.7747 - 1.7486 1.00 4818 238 0.1862 0.2560 REMARK 3 24 1.7486 - 1.7240 1.00 4746 238 0.1916 0.1998 REMARK 3 25 1.7240 - 1.7007 1.00 4810 213 0.1943 0.2264 REMARK 3 26 1.7007 - 1.6786 0.99 4833 198 0.1953 0.2201 REMARK 3 27 1.6786 - 1.6576 0.95 4513 241 0.2218 0.2447 REMARK 3 28 1.6576 - 1.6377 0.89 4219 228 0.2323 0.2281 REMARK 3 29 1.6377 - 1.6186 0.82 3999 193 0.2413 0.2408 REMARK 3 30 1.6186 - 1.6004 0.76 3612 196 0.2480 0.2993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2878 REMARK 3 ANGLE : 0.989 3997 REMARK 3 CHIRALITY : 0.061 450 REMARK 3 PLANARITY : 0.006 412 REMARK 3 DIHEDRAL : 11.702 2214 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0364 2.8265 165.3434 REMARK 3 T TENSOR REMARK 3 T11: 0.2260 T22: 0.2544 REMARK 3 T33: 0.2039 T12: 0.0041 REMARK 3 T13: -0.0530 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2105 L22: 0.4378 REMARK 3 L33: 0.2300 L12: 0.0591 REMARK 3 L13: -0.0303 L23: 0.3034 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0332 S13: 0.1330 REMARK 3 S21: 0.1848 S22: 0.0089 S23: -0.1690 REMARK 3 S31: -0.0484 S32: 0.3637 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9156 2.4479 165.8020 REMARK 3 T TENSOR REMARK 3 T11: 0.2544 T22: 0.3359 REMARK 3 T33: 0.1940 T12: 0.0553 REMARK 3 T13: 0.0061 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.3233 L22: 0.1376 REMARK 3 L33: 0.1307 L12: -0.1289 REMARK 3 L13: 0.1982 L23: -0.0964 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.1905 S13: 0.0344 REMARK 3 S21: -0.0461 S22: 0.0213 S23: -0.1159 REMARK 3 S31: 0.1871 S32: 0.6958 S33: 0.0383 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9801 10.9528 165.0660 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.0793 REMARK 3 T33: 0.1318 T12: 0.0155 REMARK 3 T13: 0.0002 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.1105 L22: 0.4898 REMARK 3 L33: 1.0372 L12: 0.1674 REMARK 3 L13: -0.3259 L23: -0.0651 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: 0.0317 S13: 0.0338 REMARK 3 S21: 0.0329 S22: -0.0349 S23: 0.1343 REMARK 3 S31: -0.0854 S32: -0.0836 S33: 0.0171 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6549 -0.2885 151.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1105 REMARK 3 T33: 0.1321 T12: 0.0043 REMARK 3 T13: -0.0147 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.4085 L22: 0.7266 REMARK 3 L33: 1.2597 L12: -0.2739 REMARK 3 L13: -0.2414 L23: 0.3875 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.0484 S13: -0.0321 REMARK 3 S21: -0.0220 S22: -0.0239 S23: 0.0336 REMARK 3 S31: 0.0752 S32: 0.0645 S33: -0.0026 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1657 -9.1506 165.8783 REMARK 3 T TENSOR REMARK 3 T11: 0.4670 T22: 0.2544 REMARK 3 T33: 0.3009 T12: -0.0076 REMARK 3 T13: 0.0694 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.0300 L22: 0.0267 REMARK 3 L33: 0.0627 L12: -0.0143 REMARK 3 L13: -0.0169 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.2452 S12: -0.3668 S13: -0.2670 REMARK 3 S21: 0.7792 S22: -0.0794 S23: 0.3860 REMARK 3 S31: 0.1211 S32: 0.0198 S33: -0.0016 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4109 -17.4244 157.7417 REMARK 3 T TENSOR REMARK 3 T11: 0.3672 T22: 0.1116 REMARK 3 T33: 0.1648 T12: 0.1422 REMARK 3 T13: -0.0008 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.1235 L22: 0.7700 REMARK 3 L33: 0.4078 L12: -0.1860 REMARK 3 L13: -0.2043 L23: 0.2553 REMARK 3 S TENSOR REMARK 3 S11: -0.2319 S12: -0.2385 S13: -0.0603 REMARK 3 S21: 0.3033 S22: 0.2294 S23: -0.0640 REMARK 3 S31: 0.5033 S32: 0.4995 S33: 0.1196 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CITRATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.83650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.68450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.68450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.41825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.68450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.68450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.25475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.68450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.68450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.41825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.68450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.68450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.25475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.83650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A5218 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5396 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5440 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5492 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CD CE NZ REMARK 470 ARG A 31 CZ NH1 NH2 REMARK 470 LYS A 42 NZ REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CE NZ REMARK 470 ARG A 150 CD NE CZ NH1 NH2 REMARK 470 LYS A 213 CE NZ REMARK 470 ARG A 220 NE CZ NH1 NH2 REMARK 470 TYR A 222 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 230 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 271 O HOH A 5101 2.06 REMARK 500 O HOH A 5111 O HOH A 5355 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -123.40 48.18 REMARK 500 ASP A 107 100.98 -164.11 REMARK 500 VAL A 166 144.16 -171.08 REMARK 500 SER A 223 72.81 -113.21 REMARK 500 VAL A 237 -37.06 -134.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A5488 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A5489 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A5490 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A5491 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A5492 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A5493 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A5494 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A5495 DISTANCE = 6.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A5001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 245 SG REMARK 620 2 CYS A 248 SG 112.0 REMARK 620 3 CYS A 265 SG 108.7 97.1 REMARK 620 4 CYS A 268 SG 108.6 115.6 114.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 5001 DBREF 6FL1 B 1 14 PDB 6FL1 6FL1 1 14 DBREF 6FL1 C 15 28 PDB 6FL1 6FL1 15 28 DBREF1 6FL1 A 1 271 UNP A0A165FVI1_LACLC DBREF2 6FL1 A A0A165FVI1 2 272 SEQADV 6FL1 PRO A 221 UNP A0A165FVI THR 222 ENGINEERED MUTATION SEQRES 1 B 14 DC DT DC DT DT DT FOX DT DT DT DC DT DC SEQRES 2 B 14 DG SEQRES 1 C 14 DG DC DG DA DG DA DA DA DC DA DA DA DG SEQRES 2 C 14 DA SEQRES 1 A 271 PRO GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 A 271 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 A 271 ALA THR TYR PRO ARG MET VAL LEU THR GLY PHE GLU GLN SEQRES 4 A 271 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 A 271 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 A 271 ASP PHE ARG LEU ILE SER HIS LEU ARG MET GLU GLY LYS SEQRES 7 A 271 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 A 271 ASP HIS LEU THR MET LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 A 271 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 A 271 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 A 271 ILE GLY PRO GLU PRO THR TYR GLU ASP PHE ASP GLU LYS SEQRES 12 A 271 LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS ILE SEQRES 13 A 271 LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY LEU SEQRES 14 A 271 GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA LYS SEQRES 15 A 271 ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SER SEQRES 16 A 271 SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE LEU SEQRES 17 A 271 GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG PRO SEQRES 18 A 271 TYR SER ALA LEU GLY SER THR GLY LYS MET GLN ASN GLU SEQRES 19 A 271 LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER ARG SEQRES 20 A 271 CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY ARG SEQRES 21 A 271 GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS HET FOX B 7 25 HET ZN A5001 1 HETNAM FOX ((1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-3,6- HETNAM 2 FOX DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL) HETNAM 3 FOX METHYL 5'-PHOSPHATE HETNAM ZN ZINC ION FORMUL 1 FOX C11 H18 N5 O7 P FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *459(H2 O) HELIX 1 AA1 GLU A 2 VAL A 18 1 17 HELIX 2 AA2 TYR A 29 VAL A 33 5 5 HELIX 3 AA3 GLY A 36 THR A 45 1 10 HELIX 4 AA4 GLN A 121 LYS A 130 1 10 HELIX 5 AA5 ASP A 141 SER A 152 1 12 HELIX 6 AA6 LYS A 155 GLU A 162 1 8 HELIX 7 AA7 GLY A 170 ALA A 181 1 12 HELIX 8 AA8 GLU A 188 LEU A 192 5 5 HELIX 9 AA9 ILE A 193 LEU A 214 1 22 HELIX 10 AB1 LYS A 230 LEU A 235 5 6 SHEET 1 AA1 4 SER A 24 ALA A 27 0 SHEET 2 AA1 4 ASP A 92 LYS A 97 -1 O LYS A 97 N SER A 24 SHEET 3 AA1 4 GLN A 102 ALA A 106 -1 O TYR A 105 N HIS A 93 SHEET 4 AA1 4 LYS A 78 ALA A 82 -1 N LYS A 78 O ALA A 106 SHEET 1 AA2 4 ILE A 49 ARG A 55 0 SHEET 2 AA2 4 TYR A 58 ILE A 63 -1 O GLU A 62 N GLN A 50 SHEET 3 AA2 4 PHE A 67 HIS A 72 -1 O SER A 71 N LEU A 59 SHEET 4 AA2 4 THR A 113 SER A 118 -1 O GLU A 115 N ILE A 70 SHEET 1 AA3 2 GLN A 253 VAL A 257 0 SHEET 2 AA3 2 ARG A 260 PHE A 264 -1 O PHE A 264 N GLN A 253 LINK O3' DT B 6 P FOX B 7 1555 1555 1.60 LINK O3' FOX B 7 P DT B 8 1555 1555 1.59 LINK SG CYS A 245 ZN ZN A5001 1555 1555 2.30 LINK SG CYS A 248 ZN ZN A5001 1555 1555 2.32 LINK SG CYS A 265 ZN ZN A5001 1555 1555 2.30 LINK SG CYS A 268 ZN ZN A5001 1555 1555 2.34 SITE 1 AC1 4 CYS A 245 CYS A 248 CYS A 265 CYS A 268 CRYST1 91.369 91.369 141.673 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007059 0.00000