HEADER FLAVOPROTEIN 02-FEB-18 6FN0 TITLE THE ANIMAL-LIKE CRYPTOCHROME FROM CHLAMYDOMONAS REINHARDTII IN COMPLEX TITLE 2 WITH 6-4 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME PHOTORECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*AP*GP*CP*GP*GP*(64T)P*(5PY) COMPND 7 P*GP*CP*CP*GP*TP*G)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*CP*AP*CP*GP*GP*CP*AP*AP*CP*CP*GP*CP*TP*G)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 4 ORGANISM_TAXID: 3055; SOURCE 5 GENE: UVR3, CHLREDRAFT_206002; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 11 ORGANISM_TAXID: 3055; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 15 ORGANISM_TAXID: 3055 KEYWDS CRYPTOCHROME, PHOTOLYASE, PHOTORECEPTOR, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FRANZ,E.IGNATZ,S.WENZEL,H.ZIELOSKO,J.YAMAMOTO,M.MITTAG,L.-O.ESSEN REVDAT 2 19-SEP-18 6FN0 1 JRNL REVDAT 1 01-AUG-18 6FN0 0 JRNL AUTH S.FRANZ,E.IGNATZ,S.WENZEL,H.ZIELOSKO,E.P.G.N.PUTU, JRNL AUTH 2 M.MAESTRE-REYNA,M.D.TSAI,J.YAMAMOTO,M.MITTAG,L.O.ESSEN JRNL TITL STRUCTURE OF THE BIFUNCTIONAL CRYPTOCHROME ACRY FROM JRNL TITL 2 CHLAMYDOMONAS REINHARDTII. JRNL REF NUCLEIC ACIDS RES. V. 46 8010 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30032195 JRNL DOI 10.1093/NAR/GKY621 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3975 REMARK 3 NUCLEIC ACID ATOMS : 568 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45000 REMARK 3 B22 (A**2) : -1.45000 REMARK 3 B33 (A**2) : 2.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4840 ; 0.010 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 4228 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6714 ; 1.507 ; 1.868 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9751 ; 1.049 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 6.408 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.528 ;22.408 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;15.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;15.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4998 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1153 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1985 ; 1.574 ; 4.742 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1984 ; 1.571 ; 4.740 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2480 ; 2.680 ; 7.107 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2481 ; 2.680 ; 7.110 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2855 ; 1.588 ; 5.078 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2855 ; 1.588 ; 5.078 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4234 ; 2.711 ; 7.558 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5808 ; 4.660 ;40.917 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5808 ; 4.660 ;40.917 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 133 REMARK 3 RESIDUE RANGE : A 171 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1122 -23.0145 -11.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.2231 REMARK 3 T33: 0.1168 T12: 0.1205 REMARK 3 T13: -0.0358 T23: -0.1032 REMARK 3 L TENSOR REMARK 3 L11: 1.9264 L22: 0.9051 REMARK 3 L33: 0.9258 L12: -0.4693 REMARK 3 L13: -0.3480 L23: 0.4171 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.1344 S13: 0.3834 REMARK 3 S21: -0.1173 S22: -0.0652 S23: -0.0755 REMARK 3 S31: -0.1052 S32: -0.2878 S33: 0.0432 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6275 -50.0631 -21.9821 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.2329 REMARK 3 T33: 0.1260 T12: 0.0100 REMARK 3 T13: -0.0438 T23: -0.1297 REMARK 3 L TENSOR REMARK 3 L11: 0.3768 L22: 3.8141 REMARK 3 L33: 4.7312 L12: -0.7000 REMARK 3 L13: -0.5549 L23: -1.9864 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.1983 S13: -0.1874 REMARK 3 S21: -0.0869 S22: -0.2139 S23: 0.3279 REMARK 3 S31: 0.2032 S32: -0.3621 S33: 0.2063 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 521 REMARK 3 RESIDUE RANGE : C 7 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2003 -43.3547 -16.9057 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.2096 REMARK 3 T33: 0.0476 T12: 0.0006 REMARK 3 T13: 0.0362 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 1.2819 L22: 0.5870 REMARK 3 L33: 0.4710 L12: 0.1716 REMARK 3 L13: 0.4368 L23: 0.4671 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: -0.0100 S13: -0.0612 REMARK 3 S21: -0.1180 S22: 0.0601 S23: -0.1570 REMARK 3 S31: -0.0903 S32: -0.0276 S33: -0.1196 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 6 REMARK 3 RESIDUE RANGE : D 9 D 14 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2519 -67.8827 -20.1017 REMARK 3 T TENSOR REMARK 3 T11: 0.3373 T22: 0.1242 REMARK 3 T33: 0.2599 T12: -0.1031 REMARK 3 T13: 0.0864 T23: -0.0583 REMARK 3 L TENSOR REMARK 3 L11: 7.2836 L22: 11.1412 REMARK 3 L33: 2.3362 L12: -4.6363 REMARK 3 L13: 0.9354 L23: -4.6855 REMARK 3 S TENSOR REMARK 3 S11: -0.4743 S12: -0.0269 S13: -1.1643 REMARK 3 S21: -0.3978 S22: 0.4028 S23: 0.3560 REMARK 3 S31: 0.0919 S32: -0.1851 S33: 0.0715 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 14 REMARK 3 RESIDUE RANGE : D 1 D 6 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6137 -63.8206 -24.2305 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.1267 REMARK 3 T33: 0.1733 T12: 0.0216 REMARK 3 T13: 0.0137 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 0.6779 L22: 2.9502 REMARK 3 L33: 7.8090 L12: -1.4093 REMARK 3 L13: -1.3664 L23: 2.9294 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: -0.0947 S13: 0.0573 REMARK 3 S21: 0.1516 S22: 0.1991 S23: -0.0680 REMARK 3 S31: 0.7108 S32: 0.0888 S33: -0.1390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 103.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 5.5, 10 % (W/V) PEG REMARK 280 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 73.12000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 73.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.72000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 73.12000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 73.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.72000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 73.12000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.12000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.72000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 73.12000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.12000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.72000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 691 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 12 -70.93 -130.10 REMARK 500 LYS A 13 -163.02 -100.48 REMARK 500 ASP A 19 62.13 31.68 REMARK 500 HIS A 42 40.12 -96.83 REMARK 500 GLN A 46 87.15 -64.78 REMARK 500 ALA A 72 3.92 -65.87 REMARK 500 SER A 133 5.73 -159.39 REMARK 500 PRO A 168 153.01 -43.32 REMARK 500 THR A 368 -108.08 -95.74 REMARK 500 ASP A 371 -55.71 -142.95 REMARK 500 PHE A 407 -27.81 65.20 REMARK 500 ASP A 425 68.27 -157.64 REMARK 500 CYS A 462 87.04 -159.45 REMARK 500 ARG A 466 -65.69 -138.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 5 OP2 REMARK 620 2 HOH C 207 O 132.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 64T C 7 and 5PY C 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 64T C 7 and 5PY C 8 DBREF 6FN0 A 1 496 UNP A8J8W0 A8J8W0_CHLRE 1 496 DBREF 6FN0 C 1 14 PDB 6FN0 6FN0 1 14 DBREF 6FN0 D 1 14 PDB 6FN0 6FN0 1 14 SEQADV 6FN0 LYS A 497 UNP A8J8W0 EXPRESSION TAG SEQADV 6FN0 LEU A 498 UNP A8J8W0 EXPRESSION TAG SEQADV 6FN0 ALA A 499 UNP A8J8W0 EXPRESSION TAG SEQRES 1 A 499 MET ALA GLY VAL LYS ASN SER ILE ILE TRP PHE ARG LYS SEQRES 2 A 499 GLY LEU ARG LEU HIS ASP ASN PRO ALA LEU LEU GLU ALA SEQRES 3 A 499 CYS LYS ASP ALA LYS HIS VAL TYR PRO VAL PHE VAL LEU SEQRES 4 A 499 ASP PRO HIS PHE LEU GLN GLN SER SER TYR LYS VAL SER SEQRES 5 A 499 VAL ASN ARG TYR ASN PHE LEU LEU GLU SER LEU GLU ASP SEQRES 6 A 499 LEU GLN ARG SER PHE GLN ALA ARG GLY SER ARG LEU LEU SEQRES 7 A 499 VAL LEU ARG GLY LYS PRO GLU GLU VAL PHE PRO ARG VAL SEQRES 8 A 499 PHE ARG GLU TRP GLY VAL THR GLN LEU CYS PHE GLU HIS SEQRES 9 A 499 ASP THR GLU PRO TYR ALA LYS VAL ARG ASP ALA ALA VAL SEQRES 10 A 499 ARG ARG LEU ALA ALA GLU ALA GLY VAL GLU VAL VAL THR SEQRES 11 A 499 PRO ILE SER HIS THR LEU TYR ASP THR ASP MET LEU VAL SEQRES 12 A 499 ALA ARG ASN GLY GLY ALA ALA PRO LEU THR MET GLN SER SEQRES 13 A 499 PHE THR LYS LEU VAL ASP ARG VAL GLY ASP PRO PRO ALA SEQRES 14 A 499 PRO ALA PRO ASP PRO PRO ALA ALA MET PRO PRO PRO ALA SEQRES 15 A 499 GLU ASP MET PRO SER ALA ALA PRO ALA ALA THR GLY VAL SEQRES 16 A 499 PRO THR TRP GLN GLU VAL GLY PHE LYS GLU PRO PRO LEU SEQRES 17 A 499 THR VAL PHE LYS GLY GLY GLU THR GLU ALA LEU ALA ARG SEQRES 18 A 499 LEU GLU ALA ALA PHE GLN ASP PRO LYS TRP VAL ALA GLY SEQRES 19 A 499 PHE GLN LYS PRO ASP THR ASP PRO SER ALA TRP GLU LYS SEQRES 20 A 499 PRO ALA THR THR VAL LEU SER PRO TYR LEU LYS PHE GLY SEQRES 21 A 499 CYS LEU SER ALA ARG LEU PHE HIS ALA ARG LEU LEU GLU SEQRES 22 A 499 VAL TYR ARG ARG HIS PRO ALA HIS SER GLN PRO PRO VAL SEQRES 23 A 499 SER LEU ARG GLY GLN LEU LEU TRP ARG GLU PHE PHE TYR SEQRES 24 A 499 THR VAL GLY SER THR THR PRO ASN PHE HIS ARG MET ALA SEQRES 25 A 499 GLY ASN PRO VAL CYS LYS GLN ILE ASP TRP ASP ASP ASN SEQRES 26 A 499 PRO GLU PHE LEU ALA ALA TRP ARG GLU ALA ARG THR GLY SEQRES 27 A 499 PHE PRO TRP ILE ASP ALA ILE MET THR GLN LEU VAL THR SEQRES 28 A 499 TRP GLY TRP MET HIS HIS LEU ALA ARG HIS SER VAL ALA SEQRES 29 A 499 CYS PHE LEU THR ARG GLY ASP LEU TYR VAL SER TRP GLU SEQRES 30 A 499 ARG GLY MET GLU VAL PHE GLU GLU HIS LEU ILE ASP GLN SEQRES 31 A 499 ASP HIS TYR LEU ASN ALA ALA ASN TRP MET TRP LEU SER SEQRES 32 A 499 ALA SER ALA PHE PHE SER GLN TYR PHE ARG VAL TYR SER SEQRES 33 A 499 PRO VAL VAL PHE GLY LYS LYS TYR ASP PRO GLU GLY ARG SEQRES 34 A 499 PHE ILE ARG LYS PHE LEU PRO VAL LEU LYS ASP MET PRO SEQRES 35 A 499 ALA LYS TYR ILE TYR GLU PRO TRP THR ALA PRO LEU GLU SEQRES 36 A 499 VAL GLN ARG LYS ALA GLY CYS VAL VAL GLY ARG ASP TYR SEQRES 37 A 499 PRO ALA PRO ILE VAL ASP HIS ALA VAL ALA SER LYS ALA SEQRES 38 A 499 CYS ILE ALA ARG MET ALA ALA ALA TYR ARG ARG SER LYS SEQRES 39 A 499 GLY GLU LYS LEU ALA SEQRES 1 C 14 DC DA DG DC DG DG 64T 5PY DG DC DC DG DT SEQRES 2 C 14 DG SEQRES 1 D 14 DC DA DC DG DG DC DA DA DC DC DG DC DT SEQRES 2 D 14 DG HET 64T C 7 21 HET 5PY C 8 19 HET FAD A 501 53 HET MES A 502 12 HET GOL A 503 6 HET MG C 101 1 HET MG C 102 1 HET CL D 101 1 HET 1PE D 102 16 HETNAM 64T 5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE HETNAM 5PY 1-(2'-DEOXY-5'-O-PHOSPHONO-BETA-D-ERYTHRO- HETNAM 2 5PY PENTOFURANOSYL)-5-METHYLPYRIMIDIN-2(1H)-ONE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 2 64T C10 H17 N2 O9 P FORMUL 2 5PY C10 H15 N2 O7 P FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 MES C6 H13 N O4 S FORMUL 6 GOL C3 H8 O3 FORMUL 7 MG 2(MG 2+) FORMUL 9 CL CL 1- FORMUL 10 1PE C10 H22 O6 FORMUL 11 HOH *111(H2 O) HELIX 1 AA1 ASN A 20 LYS A 28 1 9 HELIX 2 AA2 SER A 52 ALA A 72 1 21 HELIX 3 AA3 LYS A 83 GLY A 96 1 14 HELIX 4 AA4 GLU A 107 GLU A 123 1 17 HELIX 5 AA5 ASP A 138 ASN A 146 1 9 HELIX 6 AA6 THR A 153 GLY A 165 1 13 HELIX 7 AA7 MET A 185 ALA A 189 5 5 HELIX 8 AA8 GLY A 214 GLN A 227 1 14 HELIX 9 AA9 ASP A 228 PHE A 235 1 8 HELIX 10 AB1 GLN A 236 THR A 240 5 5 HELIX 11 AB2 LEU A 253 PHE A 259 1 7 HELIX 12 AB3 SER A 263 ARG A 277 1 15 HELIX 13 AB4 SER A 287 THR A 304 1 18 HELIX 14 AB5 ASN A 325 GLU A 334 1 10 HELIX 15 AB6 PHE A 339 GLY A 353 1 15 HELIX 16 AB7 HIS A 356 THR A 368 1 13 HELIX 17 AB8 SER A 375 LEU A 387 1 13 HELIX 18 AB9 ASP A 391 SER A 403 1 13 HELIX 19 AC1 PHE A 420 TYR A 424 5 5 HELIX 20 AC2 GLY A 428 LEU A 435 1 8 HELIX 21 AC3 PRO A 436 LYS A 439 5 4 HELIX 22 AC4 PRO A 442 TYR A 447 1 6 HELIX 23 AC5 GLU A 448 ALA A 452 5 5 HELIX 24 AC6 PRO A 453 GLY A 461 1 9 HELIX 25 AC7 ASP A 474 LEU A 498 1 25 SHEET 1 AA1 5 LEU A 78 ARG A 81 0 SHEET 2 AA1 5 HIS A 32 LEU A 39 1 N LEU A 39 O LEU A 80 SHEET 3 AA1 5 ASN A 6 PHE A 11 1 N PHE A 11 O VAL A 36 SHEET 4 AA1 5 GLN A 99 PHE A 102 1 O CYS A 101 N ILE A 8 SHEET 5 AA1 5 GLU A 127 VAL A 129 1 O GLU A 127 N LEU A 100 LINK OP2 DG C 5 MG MG C 102 1555 1555 2.49 LINK O3' DG C 6 P 64T C 7 1555 1555 1.58 LINK O3' 64T C 7 P 5PY C 8 1555 1555 1.63 LINK C6 64T C 7 C4 5PY C 8 1555 1555 1.46 LINK O3' 5PY C 8 P DG C 9 1555 1555 1.61 LINK OP2 DG C 12 MG MG C 101 1555 1555 2.31 LINK MG MG C 102 O HOH C 207 1555 1555 2.36 CISPEP 1 PRO A 284 PRO A 285 0 7.25 SITE 1 AC1 28 PHE A 235 LYS A 237 THR A 250 THR A 251 SITE 2 AC1 28 VAL A 252 LEU A 253 SER A 254 LEU A 257 SITE 3 AC1 28 GLN A 291 LEU A 292 ARG A 295 PHE A 298 SITE 4 AC1 28 TRP A 354 HIS A 357 ARG A 360 HIS A 361 SITE 5 AC1 28 LEU A 387 ASP A 389 GLN A 390 ASP A 391 SITE 6 AC1 28 LEU A 394 ASN A 395 ASN A 398 TRP A 399 SITE 7 AC1 28 LEU A 402 HOH A 612 HOH A 653 64T C 7 SITE 1 AC2 3 ASP A 40 ARG A 55 LEU A 59 SITE 1 AC3 5 ASP A 323 ASP A 371 ARG A 485 HOH A 664 SITE 2 AC3 5 HOH A 673 SITE 1 AC4 2 DC C 11 DG C 12 SITE 1 AC5 3 DC C 4 DG C 5 HOH C 207 SITE 1 AC6 1 DG D 4 SITE 1 AC7 3 DC C 1 DA C 2 DG D 14 SITE 1 AC8 21 MET A 154 LYS A 237 PRO A 238 PRO A 285 SITE 2 AC8 21 GLN A 291 TRP A 294 HIS A 357 LEU A 358 SITE 3 AC8 21 HIS A 361 TRP A 401 TYR A 415 FAD A 501 SITE 4 AC8 21 HOH A 610 HOH A 627 HOH A 636 HOH A 652 SITE 5 AC8 21 DG C 6 DG C 9 HOH C 203 HOH C 204 SITE 6 AC8 21 HOH C 205 SITE 1 AC9 21 MET A 154 LYS A 237 PRO A 238 PRO A 285 SITE 2 AC9 21 GLN A 291 TRP A 294 HIS A 357 LEU A 358 SITE 3 AC9 21 HIS A 361 TRP A 401 TYR A 415 FAD A 501 SITE 4 AC9 21 HOH A 610 HOH A 627 HOH A 636 HOH A 652 SITE 5 AC9 21 DG C 6 DG C 9 HOH C 203 HOH C 204 SITE 6 AC9 21 HOH C 205 CRYST1 146.240 146.240 67.440 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014828 0.00000