HEADER GENE REGULATION 06-FEB-18 6FO9 TITLE VITAMIN D NUCLEAR RECEPTOR COMPLEX 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 4 17-JAN-24 6FO9 1 REMARK REVDAT 3 24-FEB-21 6FO9 1 REMARK REVDAT 2 27-JUN-18 6FO9 1 JRNL REVDAT 1 16-MAY-18 6FO9 0 JRNL AUTH P.GOGOI,S.SEOANE,R.SIGUEIRO,T.GUIBERTEAU,M.A.MAESTRO, JRNL AUTH 2 R.PEREZ-FERNANDEZ,N.ROCHEL,A.MOURINO JRNL TITL AROMATIC-BASED DESIGN OF HIGHLY ACTIVE AND NONCALCEMIC JRNL TITL 2 VITAMIN D RECEPTOR AGONISTS. JRNL REF J. MED. CHEM. V. 61 4928 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29733645 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00337 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1796 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 9671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8569 - 3.8918 0.95 3196 170 0.1788 0.2018 REMARK 3 2 3.8918 - 3.0909 0.97 3069 157 0.2195 0.2486 REMARK 3 3 3.0909 - 2.7007 0.94 2931 148 0.2624 0.3093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2066 REMARK 3 ANGLE : 0.739 2785 REMARK 3 CHIRALITY : 0.026 313 REMARK 3 PLANARITY : 0.004 363 REMARK 3 DIHEDRAL : 15.353 799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9271 52.6047 51.8766 REMARK 3 T TENSOR REMARK 3 T11: 0.9980 T22: 1.3751 REMARK 3 T33: 0.9488 T12: 0.2063 REMARK 3 T13: -0.2331 T23: -0.2476 REMARK 3 L TENSOR REMARK 3 L11: 3.3940 L22: 5.5102 REMARK 3 L33: 2.6857 L12: 0.3879 REMARK 3 L13: 1.3648 L23: 3.4485 REMARK 3 S TENSOR REMARK 3 S11: -0.1669 S12: -0.4714 S13: 1.1053 REMARK 3 S21: -0.3593 S22: 0.0492 S23: -1.0652 REMARK 3 S31: -0.7607 S32: 0.7425 S33: -0.1488 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4140 38.9964 30.2475 REMARK 3 T TENSOR REMARK 3 T11: 0.9534 T22: 1.0009 REMARK 3 T33: 0.8724 T12: 0.1322 REMARK 3 T13: -0.1908 T23: -0.0878 REMARK 3 L TENSOR REMARK 3 L11: 3.8489 L22: 4.8032 REMARK 3 L33: 8.6061 L12: -1.3779 REMARK 3 L13: 1.3205 L23: 3.4647 REMARK 3 S TENSOR REMARK 3 S11: -0.2801 S12: -0.3900 S13: 0.1906 REMARK 3 S21: -0.2262 S22: -0.0706 S23: 0.4516 REMARK 3 S31: -1.0552 S32: -0.8926 S33: 0.5685 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1832 38.8250 38.3637 REMARK 3 T TENSOR REMARK 3 T11: 0.7105 T22: 0.8177 REMARK 3 T33: 0.7081 T12: 0.0652 REMARK 3 T13: -0.1069 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 3.3266 L22: 4.0329 REMARK 3 L33: 6.8268 L12: -0.6247 REMARK 3 L13: 0.5492 L23: 3.3465 REMARK 3 S TENSOR REMARK 3 S11: -0.3596 S12: -0.6906 S13: 0.7043 REMARK 3 S21: 0.0839 S22: 0.4610 S23: -0.3459 REMARK 3 S31: -0.2248 S32: 0.3179 S33: -0.2220 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7851 34.0267 38.8178 REMARK 3 T TENSOR REMARK 3 T11: 0.9601 T22: 1.5304 REMARK 3 T33: 0.9722 T12: -0.0374 REMARK 3 T13: 0.0248 T23: -0.1467 REMARK 3 L TENSOR REMARK 3 L11: 3.4774 L22: 5.8782 REMARK 3 L33: 7.5243 L12: -0.8855 REMARK 3 L13: 0.3619 L23: 3.5168 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.5991 S13: -0.1483 REMARK 3 S21: 0.3027 S22: -0.4277 S23: 1.4357 REMARK 3 S31: 0.2933 S32: -2.2062 S33: 0.7389 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0480 29.9413 48.8177 REMARK 3 T TENSOR REMARK 3 T11: 1.0140 T22: 1.5112 REMARK 3 T33: 0.8837 T12: -0.0276 REMARK 3 T13: 0.0574 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 4.1444 L22: 9.4586 REMARK 3 L33: 3.5585 L12: -0.4772 REMARK 3 L13: 0.4606 L23: 5.5390 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -1.4753 S13: -0.9604 REMARK 3 S21: 1.3756 S22: -0.0214 S23: 0.4784 REMARK 3 S31: 1.1963 S32: -1.2187 S33: 0.4444 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4243 40.8920 54.1603 REMARK 3 T TENSOR REMARK 3 T11: 1.1047 T22: 1.2945 REMARK 3 T33: 0.7610 T12: 0.2718 REMARK 3 T13: -0.1772 T23: -0.1331 REMARK 3 L TENSOR REMARK 3 L11: 3.3580 L22: 5.9726 REMARK 3 L33: 7.9324 L12: -0.8871 REMARK 3 L13: 0.0153 L23: 3.0438 REMARK 3 S TENSOR REMARK 3 S11: -0.1758 S12: -0.6835 S13: 0.0858 REMARK 3 S21: 1.0166 S22: 0.3847 S23: -0.5329 REMARK 3 S31: 0.7565 S32: 0.3347 S33: -0.3551 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7620 27.7044 46.4214 REMARK 3 T TENSOR REMARK 3 T11: 1.1609 T22: 0.9985 REMARK 3 T33: 0.7800 T12: 0.0870 REMARK 3 T13: -0.0541 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 2.3307 L22: 6.4052 REMARK 3 L33: 3.2551 L12: -0.3072 REMARK 3 L13: 0.6977 L23: 4.3605 REMARK 3 S TENSOR REMARK 3 S11: -0.3507 S12: -0.8444 S13: -0.3860 REMARK 3 S21: 1.6056 S22: 0.4638 S23: 0.0915 REMARK 3 S31: 1.5819 S32: 0.8438 S33: -0.2355 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2550 30.9276 27.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.8260 T22: 0.9777 REMARK 3 T33: 0.7472 T12: 0.0469 REMARK 3 T13: -0.0905 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 3.5225 L22: 6.8536 REMARK 3 L33: 7.3398 L12: 1.1421 REMARK 3 L13: 2.0117 L23: 3.1345 REMARK 3 S TENSOR REMARK 3 S11: 0.1761 S12: 0.1429 S13: -0.7133 REMARK 3 S21: 0.4445 S22: 0.0621 S23: -0.9300 REMARK 3 S31: 1.0427 S32: 0.4462 S33: -0.3823 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0721 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2HC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BISTRIS PH 6.5, 1.6 M LITHIUM SULFATE REMARK 280 AND 50 MM MAGNESIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.30667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.15333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.23000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.07667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 220.38333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.30667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.15333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.07667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.23000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 220.38333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 33.00500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 57.16634 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.07667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 SER A 453 REMARK 465 ARG B 687 REMARK 465 GLU B 697 REMARK 465 GLY B 698 REMARK 465 SER B 699 REMARK 465 PRO B 700 REMARK 465 SER B 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 470 VAL A 452 CG1 CG2 REMARK 470 GLN B 696 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 689 CG CD CE NZ REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 614 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E0E A 500 DBREF 6FO9 A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 6FO9 B 687 701 PDB 6FO9 6FO9 687 701 SEQADV 6FO9 HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 6FO9 MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 300 HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE ASN SER SEQRES 2 A 300 LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SER TYR SEQRES 3 A 300 SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG GLU GLY SEQRES 4 A 300 PRO VAL THR ARG SER ALA SER ARG ALA ALA SER LEU HIS SEQRES 5 A 300 SER LEU SER ASP ALA SER SER ASP SER PHE ASN HIS SER SEQRES 6 A 300 PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER ASN LEU SEQRES 7 A 300 LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SER SER SEQRES 8 A 300 GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU PRO HIS SEQRES 9 A 300 LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS VAL ILE SEQRES 10 A 300 GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP LEU THR SEQRES 11 A 300 ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER ALA ILE SEQRES 12 A 300 GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SER LEU SEQRES 13 A 300 GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP PHE LYS SEQRES 14 A 300 TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS THR LEU SEQRES 15 A 300 GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL GLY LEU SEQRES 16 A 300 LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL LEU LEU SEQRES 17 A 300 MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO GLY VAL SEQRES 18 A 300 GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP ARG LEU SEQRES 19 A 300 CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN HIS PRO SEQRES 20 A 300 GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN LYS LEU SEQRES 21 A 300 ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER LYS GLN SEQRES 22 A 300 TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER MET GLN SEQRES 23 A 300 LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER GLU VAL SEQRES 24 A 300 SER SEQRES 1 B 15 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER SEQRES 2 B 15 PRO SER HET E0E A 500 30 HETNAM E0E (1~{R},3~{S},5~{Z})-4-METHYLIDENE-5-[(~{E})-3-[3-(6- HETNAM 2 E0E METHYL-6-OXIDANYL-HEPTYL)PHENYL]HEX-2- HETNAM 3 E0E ENYLIDENE]CYCLOHEXANE-1,3-DIOL FORMUL 3 E0E C27 H40 O3 FORMUL 4 HOH *15(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 LYS A 274 1 21 HELIX 4 AA4 GLY A 278 LEU A 282 5 5 HELIX 5 AA5 THR A 283 SER A 303 1 21 HELIX 6 AA6 CYS A 324 LYS A 330 1 7 HELIX 7 AA7 THR A 334 LYS A 350 1 17 HELIX 8 AA8 HIS A 354 LEU A 367 1 14 HELIX 9 AA9 ASP A 376 HIS A 399 1 24 HELIX 10 AB1 LEU A 404 GLN A 433 1 30 HELIX 11 AB2 GLN A 433 MET A 438 1 6 HELIX 12 AB3 THR A 441 PHE A 448 1 8 HELIX 13 AB4 LYS B 689 LEU B 695 1 7 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 SITE 1 AC1 16 TYR A 175 LEU A 261 VAL A 262 SER A 265 SITE 2 AC1 16 ILE A 299 MET A 300 ARG A 302 SER A 303 SITE 3 AC1 16 SER A 306 TRP A 314 CYS A 316 TYR A 323 SITE 4 AC1 16 VAL A 328 HIS A 333 HIS A 423 LEU A 430 CRYST1 66.010 66.010 264.460 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015149 0.008746 0.000000 0.00000 SCALE2 0.000000 0.017493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003781 0.00000