HEADER FLAVOPROTEIN 09-FEB-18 6FP4 TITLE THIOREDOXIN GLUTATHIONE REDUCTASE FROM SCHISTOSOMA MANSONI IN COMPLEX TITLE 2 WITH 1,8-NAPHTHYRIDINE-2-CARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN GLUTATHIONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: SMP_048430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FRAGMENT, ALLOSTERIC POCKET, SCHISTOSOMIASIS, FAD/NAD LINKED KEYWDS 2 REDUCTASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.SILVESTRI,F.FATA,A.E.MIELE,G.BOUMIS,D.L.WILLIAMS,F.ANGELUCCI REVDAT 4 17-JAN-24 6FP4 1 REMARK REVDAT 3 30-MAR-22 6FP4 1 REMARK REVDAT 2 29-AUG-18 6FP4 1 JRNL REVDAT 1 06-JUN-18 6FP4 0 JRNL AUTH I.SILVESTRI,H.LYU,F.FATA,G.BOUMIS,A.E.MIELE,M.ARDINI, JRNL AUTH 2 R.IPPOLITI,A.BELLELLI,A.JADHAV,W.A.LEA,A.SIMEONOV,Q.CHENG, JRNL AUTH 3 E.S.J.ARNER,G.R.J.THATCHER,P.A.PETUKHOV,D.L.WILLIAMS, JRNL AUTH 4 F.ANGELUCCI JRNL TITL FRAGMENT-BASED DISCOVERY OF A REGULATORY SITE IN THIOREDOXIN JRNL TITL 2 GLUTATHIONE REDUCTASE ACTING AS "DOORSTOP" FOR NADPH ENTRY. JRNL REF ACS CHEM. BIOL. V. 13 2190 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29800515 JRNL DOI 10.1021/ACSCHEMBIO.8B00349 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6850 - 5.3836 1.00 2580 136 0.1733 0.1908 REMARK 3 2 5.3836 - 4.2746 1.00 2520 168 0.1499 0.1907 REMARK 3 3 4.2746 - 3.7347 0.99 2510 145 0.1634 0.1989 REMARK 3 4 3.7347 - 3.3934 1.00 2523 135 0.1907 0.2228 REMARK 3 5 3.3934 - 3.1503 1.00 2538 133 0.2145 0.2519 REMARK 3 6 3.1503 - 2.9646 1.00 2512 138 0.2471 0.3198 REMARK 3 7 2.9646 - 2.8162 1.00 2550 110 0.2528 0.2907 REMARK 3 8 2.8162 - 2.6936 1.00 2528 140 0.2547 0.2941 REMARK 3 9 2.6936 - 2.5899 1.00 2480 157 0.2658 0.2983 REMARK 3 10 2.5899 - 2.5006 0.97 2446 131 0.3057 0.3430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4697 REMARK 3 ANGLE : 0.685 6364 REMARK 3 CHIRALITY : 0.045 720 REMARK 3 PLANARITY : 0.004 796 REMARK 3 DIHEDRAL : 13.347 2783 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 145.7690 9.7942 61.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.4146 T22: 0.4149 REMARK 3 T33: 0.4183 T12: -0.0220 REMARK 3 T13: -0.0218 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.1686 L22: 1.6469 REMARK 3 L33: 0.6936 L12: 0.6054 REMARK 3 L13: -0.1534 L23: 0.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.0724 S12: 0.0459 S13: 0.0630 REMARK 3 S21: -0.1746 S22: 0.1346 S23: -0.2892 REMARK 3 S31: -0.0952 S32: 0.2028 S33: -0.0482 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 128.0907 -3.6994 81.7044 REMARK 3 T TENSOR REMARK 3 T11: 0.4287 T22: 0.4222 REMARK 3 T33: 0.3003 T12: 0.0729 REMARK 3 T13: -0.0121 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.5611 L22: 1.3524 REMARK 3 L33: 1.0728 L12: -0.1501 REMARK 3 L13: 0.1903 L23: -0.5100 REMARK 3 S TENSOR REMARK 3 S11: -0.1223 S12: -0.3852 S13: -0.0253 REMARK 3 S21: 0.3382 S22: 0.1696 S23: -0.0804 REMARK 3 S31: -0.0963 S32: 0.0245 S33: -0.0454 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 416 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): 120.1688 14.6010 63.9887 REMARK 3 T TENSOR REMARK 3 T11: 0.4024 T22: 0.3203 REMARK 3 T33: 0.3168 T12: 0.0223 REMARK 3 T13: -0.0102 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.0540 L22: 1.1129 REMARK 3 L33: 1.0174 L12: -0.1196 REMARK 3 L13: 0.2937 L23: 0.0659 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: -0.1280 S13: 0.1671 REMARK 3 S21: 0.0056 S22: 0.0958 S23: 0.1307 REMARK 3 S31: -0.1799 S32: -0.0803 S33: 0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.69800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%PEG 3350 0.1M BIS-TRIS PH 7.0 0.2M REMARK 280 KI 0.005M DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.15800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.79200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.15800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.79200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 239.11118 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.39566 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 593 REMARK 465 SER A 594 REMARK 465 GLY A 595 REMARK 465 CYS A 596 REMARK 465 SEC A 597 REMARK 465 GLY A 598 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 177 HH21 ARG A 515 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -70.42 -57.64 REMARK 500 ASN A 55 22.14 -151.35 REMARK 500 ASP A 84 -166.46 -77.09 REMARK 500 SER A 104 138.66 -172.55 REMARK 500 VAL A 157 32.14 -144.05 REMARK 500 ALA A 256 52.16 -147.72 REMARK 500 ALA A 294 11.84 -145.76 REMARK 500 SER A 295 -158.62 -97.47 REMARK 500 SER A 318 -76.42 -124.63 REMARK 500 SER A 318 -77.19 -124.09 REMARK 500 LEU A 346 73.59 50.32 REMARK 500 ASN A 363 74.30 41.53 REMARK 500 PHE A 474 49.95 -89.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 153 OG1 REMARK 620 2 ASP A 433 OD2 138.0 REMARK 620 3 FAD A 601 O1A 49.7 139.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E1T A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 250 A 606 DBREF 6FP4 A 1 598 UNP G4V8J4 G4V8J4_SCHMA 1 598 SEQRES 1 A 598 MET PRO PRO ALA ASP GLY THR SER GLN TRP LEU ARG LYS SEQRES 2 A 598 THR VAL ASP SER ALA ALA VAL ILE LEU PHE SER LYS THR SEQRES 3 A 598 THR CYS PRO TYR CYS LYS LYS VAL LYS ASP VAL LEU ALA SEQRES 4 A 598 GLU ALA LYS ILE LYS HIS ALA THR ILE GLU LEU ASP GLN SEQRES 5 A 598 LEU SER ASN GLY SER ALA ILE GLN LYS CYS LEU ALA SER SEQRES 6 A 598 PHE SER LYS ILE GLU THR VAL PRO GLN MET PHE VAL ARG SEQRES 7 A 598 GLY LYS PHE ILE GLY ASP SER GLN THR VAL LEU LYS TYR SEQRES 8 A 598 TYR SER ASN ASP GLU LEU ALA GLY ILE VAL ASN GLU SER SEQRES 9 A 598 LYS TYR ASP TYR ASP LEU ILE VAL ILE GLY GLY GLY SER SEQRES 10 A 598 GLY GLY LEU ALA ALA GLY LYS GLU ALA ALA LYS TYR GLY SEQRES 11 A 598 ALA LYS THR ALA VAL LEU ASP TYR VAL GLU PRO THR PRO SEQRES 12 A 598 ILE GLY THR THR TRP GLY LEU GLY GLY THR CYS VAL ASN SEQRES 13 A 598 VAL GLY CYS ILE PRO LYS LYS LEU MET HIS GLN ALA GLY SEQRES 14 A 598 LEU LEU SER HIS ALA LEU GLU ASP ALA GLU HIS PHE GLY SEQRES 15 A 598 TRP SER LEU ASP ARG SER LYS ILE SER HIS ASN TRP SER SEQRES 16 A 598 THR MET VAL GLU GLY VAL GLN SER HIS ILE GLY SER LEU SEQRES 17 A 598 ASN TRP GLY TYR LYS VAL ALA LEU ARG ASP ASN GLN VAL SEQRES 18 A 598 THR TYR LEU ASN ALA LYS GLY ARG LEU ILE SER PRO HIS SEQRES 19 A 598 GLU VAL GLN ILE THR ASP LYS ASN GLN LYS VAL SER THR SEQRES 20 A 598 ILE THR GLY ASN LYS ILE ILE LEU ALA THR GLY GLU ARG SEQRES 21 A 598 PRO LYS TYR PRO GLU ILE PRO GLY ALA VAL GLU TYR GLY SEQRES 22 A 598 ILE THR SER ASP ASP LEU PHE SER LEU PRO TYR PHE PRO SEQRES 23 A 598 GLY LYS THR LEU VAL ILE GLY ALA SER TYR VAL ALA LEU SEQRES 24 A 598 GLU CYS ALA GLY PHE LEU ALA SER LEU GLY GLY ASP VAL SEQRES 25 A 598 THR VAL MET VAL ARG SER ILE LEU LEU ARG GLY PHE ASP SEQRES 26 A 598 GLN GLN MET ALA GLU LYS VAL GLY ASP TYR MET GLU ASN SEQRES 27 A 598 HIS GLY VAL LYS PHE ALA LYS LEU CYS VAL PRO ASP GLU SEQRES 28 A 598 ILE LYS GLN LEU LYS VAL VAL ASP THR GLU ASN ASN LYS SEQRES 29 A 598 PRO GLY LEU LEU LEU VAL LYS GLY HIS TYR THR ASP GLY SEQRES 30 A 598 LYS LYS PHE GLU GLU GLU PHE GLU THR VAL ILE PHE ALA SEQRES 31 A 598 VAL GLY ARG GLU PRO GLN LEU SER LYS VAL LEU CYS GLU SEQRES 32 A 598 THR VAL GLY VAL LYS LEU ASP LYS ASN GLY ARG VAL VAL SEQRES 33 A 598 CYS THR ASP ASP GLU GLN THR THR VAL SER ASN VAL TYR SEQRES 34 A 598 ALA ILE GLY ASP ILE ASN ALA GLY LYS PRO GLN LEU THR SEQRES 35 A 598 PRO VAL ALA ILE GLN ALA GLY ARG TYR LEU ALA ARG ARG SEQRES 36 A 598 LEU PHE ALA GLY ALA THR GLU LEU THR ASP TYR SER ASN SEQRES 37 A 598 VAL ALA THR THR VAL PHE THR PRO LEU GLU TYR GLY ALA SEQRES 38 A 598 CYS GLY LEU SER GLU GLU ASP ALA ILE GLU LYS TYR GLY SEQRES 39 A 598 ASP LYS ASP ILE GLU VAL TYR HIS SER ASN PHE LYS PRO SEQRES 40 A 598 LEU GLU TRP THR VAL ALA HIS ARG GLU ASP ASN VAL CYS SEQRES 41 A 598 TYR MET LYS LEU VAL CYS ARG LYS SER ASP ASN MET ARG SEQRES 42 A 598 VAL LEU GLY LEU HIS VAL LEU GLY PRO ASN ALA GLY GLU SEQRES 43 A 598 ILE THR GLN GLY TYR ALA VAL ALA ILE LYS MET GLY ALA SEQRES 44 A 598 THR LYS ALA ASP PHE ASP ARG THR ILE GLY ILE HIS PRO SEQRES 45 A 598 THR CYS SER GLU THR PHE THR THR LEU HIS VAL THR LYS SEQRES 46 A 598 LYS SER GLY VAL SER PRO ILE VAL SER GLY CYS SEC GLY HET FAD A 601 84 HET PGE A 602 24 HET PGE A 603 24 HET E1T A 604 13 HET NA A 605 1 HET 250 A 606 36 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PGE TRIETHYLENE GLYCOL HETNAM E1T 1,8-NAPHTHYRIDINE-2-CARBOXYLIC ACID HETNAM NA SODIUM ION HETNAM 250 (2R)-2-HYDROXY-3-[4-(2-HYDROXYETHYL)PIPERAZIN-1- HETNAM 2 250 YL]PROPANE-1-SULFONIC ACID FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 PGE 2(C6 H14 O4) FORMUL 5 E1T C9 H6 N2 O2 FORMUL 6 NA NA 1+ FORMUL 7 250 C9 H20 N2 O5 S FORMUL 8 HOH *91(H2 O) HELIX 1 AA1 GLY A 6 ALA A 18 1 13 HELIX 2 AA2 CYS A 28 ALA A 41 1 14 HELIX 3 AA3 ASP A 51 LEU A 53 5 3 HELIX 4 AA4 ASN A 55 LEU A 63 1 9 HELIX 5 AA5 LEU A 63 LYS A 68 1 6 HELIX 6 AA6 ASP A 84 ASN A 94 1 11 HELIX 7 AA7 GLU A 96 GLU A 103 1 8 HELIX 8 AA8 GLY A 116 TYR A 129 1 14 HELIX 9 AA9 GLY A 151 GLY A 158 1 8 HELIX 10 AB1 GLY A 158 PHE A 181 1 24 HELIX 11 AB2 ASP A 186 ILE A 190 5 5 HELIX 12 AB3 ASN A 193 ASN A 219 1 27 HELIX 13 AB4 GLY A 268 GLY A 273 1 6 HELIX 14 AB5 SER A 276 PHE A 280 1 5 HELIX 15 AB6 SER A 295 LEU A 308 1 14 HELIX 16 AB7 ASP A 325 ASN A 338 1 14 HELIX 17 AB8 LEU A 397 VAL A 400 5 4 HELIX 18 AB9 CYS A 402 GLY A 406 5 5 HELIX 19 AC1 GLY A 432 ASN A 435 5 4 HELIX 20 AC2 LEU A 441 GLY A 459 1 19 HELIX 21 AC3 SER A 485 GLY A 494 1 10 HELIX 22 AC4 LEU A 508 ALA A 513 1 6 HELIX 23 AC5 SER A 529 ASN A 531 5 3 HELIX 24 AC6 ASN A 543 MET A 557 1 15 HELIX 25 AC7 THR A 560 ARG A 566 1 7 HELIX 26 AC8 CYS A 574 LEU A 581 5 8 SHEET 1 AA1 4 ALA A 46 GLU A 49 0 SHEET 2 AA1 4 VAL A 20 SER A 24 1 N VAL A 20 O ALA A 46 SHEET 3 AA1 4 GLN A 74 VAL A 77 -1 O GLN A 74 N PHE A 23 SHEET 4 AA1 4 LYS A 80 GLY A 83 -1 O LYS A 80 N VAL A 77 SHEET 1 AA2 6 THR A 222 LEU A 224 0 SHEET 2 AA2 6 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA2 6 TYR A 108 ILE A 113 1 N VAL A 112 O ALA A 134 SHEET 4 AA2 6 VAL A 245 LEU A 255 1 O LYS A 252 N ASP A 109 SHEET 5 AA2 6 GLU A 235 THR A 239 -1 N VAL A 236 O ILE A 248 SHEET 6 AA2 6 LYS A 227 SER A 232 -1 N ARG A 229 O GLN A 237 SHEET 1 AA3 5 THR A 222 LEU A 224 0 SHEET 2 AA3 5 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA3 5 TYR A 108 ILE A 113 1 N VAL A 112 O ALA A 134 SHEET 4 AA3 5 VAL A 245 LEU A 255 1 O LYS A 252 N ASP A 109 SHEET 5 AA3 5 VAL A 428 ALA A 430 1 O TYR A 429 N LEU A 255 SHEET 1 AA4 2 GLU A 259 PRO A 261 0 SHEET 2 AA4 2 ARG A 393 PRO A 395 -1 O GLU A 394 N ARG A 260 SHEET 1 AA5 5 ILE A 274 THR A 275 0 SHEET 2 AA5 5 THR A 386 PHE A 389 1 O PHE A 389 N ILE A 274 SHEET 3 AA5 5 THR A 289 ILE A 292 1 N ILE A 292 O ILE A 388 SHEET 4 AA5 5 VAL A 312 VAL A 316 1 O THR A 313 N VAL A 291 SHEET 5 AA5 5 LYS A 342 LYS A 345 1 O ALA A 344 N VAL A 314 SHEET 1 AA6 3 CYS A 347 LYS A 356 0 SHEET 2 AA6 3 LEU A 367 TYR A 374 -1 O LEU A 369 N LYS A 353 SHEET 3 AA6 3 LYS A 379 PHE A 384 -1 O PHE A 380 N GLY A 372 SHEET 1 AA7 5 THR A 471 VAL A 473 0 SHEET 2 AA7 5 TYR A 479 GLY A 483 -1 O TYR A 479 N VAL A 473 SHEET 3 AA7 5 VAL A 534 LEU A 540 -1 O VAL A 539 N GLY A 480 SHEET 4 AA7 5 CYS A 520 ARG A 527 -1 N TYR A 521 O LEU A 540 SHEET 5 AA7 5 ILE A 498 PHE A 505 -1 N GLU A 499 O CYS A 526 SSBOND 1 CYS A 28 CYS A 31 1555 1555 2.03 SSBOND 2 CYS A 154 CYS A 159 1555 1555 2.84 LINK OG1 THR A 153 NA NA A 605 1555 1555 3.15 LINK OD2 ASP A 433 NA NA A 605 1555 1555 2.56 LINK O1A FAD A 601 NA NA A 605 1555 1555 2.70 CISPEP 1 VAL A 72 PRO A 73 0 4.71 CISPEP 2 HIS A 571 PRO A 572 0 -5.41 SITE 1 AC1 36 ILE A 113 GLY A 114 GLY A 115 GLY A 116 SITE 2 AC1 36 SER A 117 GLY A 118 ASP A 137 TYR A 138 SITE 3 AC1 36 GLY A 152 THR A 153 CYS A 154 VAL A 157 SITE 4 AC1 36 GLY A 158 CYS A 159 LYS A 162 ALA A 226 SITE 5 AC1 36 LYS A 227 GLY A 228 ALA A 256 THR A 257 SITE 6 AC1 36 GLY A 258 TYR A 296 ARG A 393 VAL A 400 SITE 7 AC1 36 GLY A 432 ASP A 433 GLN A 440 LEU A 441 SITE 8 AC1 36 THR A 442 PRO A 443 PHE A 474 HIS A 571 SITE 9 AC1 36 PRO A 572 NA A 605 HOH A 713 HOH A 714 SITE 1 AC2 4 ASP A 488 GLU A 491 LYS A 492 250 A 606 SITE 1 AC3 2 TRP A 10 ASN A 55 SITE 1 AC4 7 TYR A 296 PHE A 324 PRO A 439 GLN A 440 SITE 2 AC4 7 LEU A 441 THR A 471 250 A 606 SITE 1 AC5 6 THR A 153 GLY A 258 GLU A 259 ARG A 393 SITE 2 AC5 6 ASP A 433 FAD A 601 SITE 1 AC6 12 GLY A 323 PHE A 324 PRO A 439 TYR A 466 SITE 2 AC6 12 SER A 467 ASN A 468 VAL A 469 LEU A 484 SITE 3 AC6 12 PGE A 602 E1T A 604 HOH A 707 HOH A 725 CRYST1 142.316 101.584 58.783 90.00 112.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007027 0.000000 0.002951 0.00000 SCALE2 0.000000 0.009844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018451 0.00000