HEADER RNA BINDING PROTEIN 11-FEB-18 6FPQ TITLE STRUCTURE OF S. POMBE MMI1 IN COMPLEX WITH 7-MER RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN MMI1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MEIOTIC MRNA INTERCEPTION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*UP*UP*AP*AP*AP*CP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: MMI1, SPCC736.12C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 12 ORGANISM_TAXID: 4896 KEYWDS MEIOSIS MRNA DECAY, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.W.STOWELL,C.H.HILL,M.YU,J.L.WAGSTAFF,S.H.MCLAUGHLIN,S.M.V.FREUND, AUTHOR 2 L.A.PASSMORE REVDAT 3 08-MAY-24 6FPQ 1 REMARK REVDAT 2 27-JUN-18 6FPQ 1 JRNL REVDAT 1 09-MAY-18 6FPQ 0 JRNL AUTH J.A.W.STOWELL,J.L.WAGSTAFF,C.H.HILL,M.YU,S.H.MCLAUGHLIN, JRNL AUTH 2 S.M.V.FREUND,L.A.PASSMORE JRNL TITL A LOW-COMPLEXITY REGION IN THE YTH DOMAIN PROTEIN MMI1 JRNL TITL 2 ENHANCES RNA BINDING. JRNL REF J. BIOL. CHEM. V. 293 9210 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29695507 JRNL DOI 10.1074/JBC.RA118.002291 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1000 - 3.5016 1.00 2743 152 0.1290 0.1680 REMARK 3 2 3.5016 - 2.7794 1.00 2719 150 0.1318 0.1500 REMARK 3 3 2.7794 - 2.4281 1.00 2701 141 0.1361 0.1499 REMARK 3 4 2.4281 - 2.2061 1.00 2682 161 0.1330 0.1737 REMARK 3 5 2.2061 - 2.0480 1.00 2674 137 0.1313 0.1567 REMARK 3 6 2.0480 - 1.9272 1.00 2715 147 0.1365 0.1552 REMARK 3 7 1.9272 - 1.8307 1.00 2674 144 0.1350 0.1548 REMARK 3 8 1.8307 - 1.7510 1.00 2693 138 0.1444 0.1595 REMARK 3 9 1.7510 - 1.6836 1.00 2691 138 0.1474 0.1837 REMARK 3 10 1.6836 - 1.6255 1.00 2698 131 0.1549 0.1805 REMARK 3 11 1.6255 - 1.5747 1.00 2690 128 0.1676 0.1638 REMARK 3 12 1.5747 - 1.5297 1.00 2714 137 0.1824 0.1876 REMARK 3 13 1.5297 - 1.4894 1.00 2646 154 0.1949 0.2299 REMARK 3 14 1.4894 - 1.4531 1.00 2669 155 0.2291 0.2364 REMARK 3 15 1.4531 - 1.4200 0.99 2672 133 0.2757 0.2947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1735 REMARK 3 ANGLE : 1.591 2388 REMARK 3 CHIRALITY : 0.119 258 REMARK 3 PLANARITY : 0.009 289 REMARK 3 DIHEDRAL : 25.566 680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2546 24.6763 -53.7168 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.1760 REMARK 3 T33: 0.2086 T12: 0.0128 REMARK 3 T13: 0.0211 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 2.9073 L22: 1.6427 REMARK 3 L33: 2.8338 L12: -0.6016 REMARK 3 L13: -0.4319 L23: -1.3307 REMARK 3 S TENSOR REMARK 3 S11: -0.0794 S12: -0.2336 S13: -0.3737 REMARK 3 S21: -0.0046 S22: -0.0975 S23: -0.2409 REMARK 3 S31: 0.1665 S32: 0.3797 S33: 0.1387 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2674 40.6965 -56.2785 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.1065 REMARK 3 T33: 0.1142 T12: -0.0080 REMARK 3 T13: -0.0030 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6866 L22: 0.4065 REMARK 3 L33: 1.3586 L12: -0.0030 REMARK 3 L13: -0.1349 L23: 0.1662 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0157 S13: 0.0235 REMARK 3 S21: -0.0280 S22: -0.0201 S23: 0.0229 REMARK 3 S31: -0.0630 S32: -0.0673 S33: 0.0286 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1325 24.7413 -48.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.1547 REMARK 3 T33: 0.2155 T12: -0.0347 REMARK 3 T13: 0.0239 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.6278 L22: 1.0806 REMARK 3 L33: 1.8442 L12: 0.0126 REMARK 3 L13: -0.4512 L23: 0.6800 REMARK 3 S TENSOR REMARK 3 S11: -0.1429 S12: -0.0873 S13: -0.4968 REMARK 3 S21: 0.2025 S22: -0.0197 S23: 0.2616 REMARK 3 S31: 0.2665 S32: -0.0372 S33: 0.0838 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS GROUPS USED: REMARK 3 REMARK 3 TLS = CHAIN 'A' AND (RESID 12 THROUGH 46 ) REMARK 3 TLS = CHAIN 'A' AND (RESID 47 THROUGH 185 ) REMARK 3 TLS = CHAIN 'B' AND (RESID -2 THROUGH 5 ) REMARK 4 REMARK 4 6FPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 47.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) ETHANOL, 10MM MAGNESIUM REMARK 280 SULFATE, 0.1M TRIS PH 8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.14067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.07033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.10550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.03517 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.17583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 299 REMARK 465 ALA A 300 REMARK 465 SER A 301 REMARK 465 ARG A 302 REMARK 465 LYS A 303 REMARK 465 GLU A 304 REMARK 465 LYS A 305 REMARK 465 PRO A 306 REMARK 465 LYS A 307 REMARK 465 ALA A 308 REMARK 465 ARG A 309 REMARK 465 ALA A 310 REMARK 465 SER A 311 REMARK 465 THR A 312 REMARK 465 PRO A 313 REMARK 465 PRO A 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 319 OG REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 717 O HOH A 758 1.90 REMARK 500 NH1 ARG A 483 O HOH A 601 1.91 REMARK 500 OD1 ASN A 439 O HOH A 602 1.92 REMARK 500 O HOH B 117 O HOH B 120 1.93 REMARK 500 O HOH A 688 O HOH A 719 1.93 REMARK 500 O HOH A 646 O HOH A 748 2.03 REMARK 500 O HOH A 792 O HOH A 798 2.08 REMARK 500 O HOH A 672 O HOH A 761 2.13 REMARK 500 O HOH A 692 O HOH A 782 2.15 REMARK 500 O HOH A 610 O HOH B 123 2.15 REMARK 500 NH2 ARG A 431 O HOH A 603 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 716 O HOH B 121 4564 1.90 REMARK 500 O HOH A 647 O HOH B 121 4564 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 2 N3 A B 2 C4 0.047 REMARK 500 A B 2 C8 A B 2 N9 0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 377 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 377 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 LYS A 387 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 488 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 U B -2 N3 - C4 - C5 ANGL. DEV. = 3.7 DEGREES REMARK 500 U B -2 C4 - C5 - C6 ANGL. DEV. = -3.7 DEGREES REMARK 500 U B -2 C5 - C4 - O4 ANGL. DEV. = -5.2 DEGREES REMARK 500 U B -1 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 A B 1 C6 - N1 - C2 ANGL. DEV. = 4.3 DEGREES REMARK 500 A B 1 N1 - C2 - N3 ANGL. DEV. = -5.6 DEGREES REMARK 500 A B 1 N7 - C8 - N9 ANGL. DEV. = -3.0 DEGREES REMARK 500 A B 2 N7 - C8 - N9 ANGL. DEV. = -3.8 DEGREES REMARK 500 A B 3 N7 - C8 - N9 ANGL. DEV. = -4.0 DEGREES REMARK 500 C B 5 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 454 59.70 33.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FPP RELATED DB: PDB DBREF 6FPQ A 299 488 UNP O74958 MMI1_SCHPO 299 488 DBREF 6FPQ B -2 5 PDB 6FPQ 6FPQ -2 5 SEQRES 1 A 190 SER ALA SER ARG LYS GLU LYS PRO LYS ALA ARG ALA SER SEQRES 2 A 190 THR PRO PRO PRO LEU ASN PHE SER ARG ALA SER GLU HIS SEQRES 3 A 190 ARG ASN GLU LYS GLY GLU ARG ILE SER MET ILE ASN PRO SEQRES 4 A 190 ARG VAL VAL LEU ASP GLU ASN GLY ILE SER HIS ARG SER SEQRES 5 A 190 ARG TYR PHE ILE MET LEU CYS ASP ASN GLU THR ALA ILE SEQRES 6 A 190 ALA HIS ALA LYS LYS THR SER ILE TRP ALA VAL LYS LYS SEQRES 7 A 190 ASP SER SER LYS ARG ILE SER ASP ALA TYR LYS LYS ALA SEQRES 8 A 190 SER VAL TYR PHE ILE PHE VAL ALA GLN GLN THR TYR ASN SEQRES 9 A 190 ALA LEU GLY TYR ALA GLN VAL VAL SER ASP LEU ASN SER SEQRES 10 A 190 THR GLU LEU PRO PHE TRP SER ASP SER SER HIS ALA GLY SEQRES 11 A 190 GLY VAL ARG ILE LYS TRP ILE LYS THR CYS ASN LEU PHE SEQRES 12 A 190 SER ALA GLU ILE SER GLU ILE VAL SER HIS MET ASP HIS SEQRES 13 A 190 GLY SER GLU ALA ARG ASP GLY MET GLU MET MET TYR ASP SEQRES 14 A 190 GLU GLY SER ARG LEU CYS THR LEU ILE ASN TYR ALA ILE SEQRES 15 A 190 MET LYS ARG ILE GLY ARG ASP ARG SEQRES 1 B 7 U U A A A C C HET MRD A 501 8 HET MRD A 502 8 HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 3 MRD 2(C6 H14 O2) FORMUL 5 HOH *229(H2 O) HELIX 1 AA1 ARG A 320 HIS A 324 5 5 HELIX 2 AA2 ASN A 359 SER A 370 1 12 HELIX 3 AA3 LYS A 376 LYS A 387 1 12 HELIX 4 AA4 SER A 442 HIS A 451 1 10 HELIX 5 AA5 MET A 465 LYS A 482 1 18 SHEET 1 AA1 2 ARG A 331 ILE A 332 0 SHEET 2 AA1 2 VAL A 340 LEU A 341 -1 O LEU A 341 N ARG A 331 SHEET 1 AA2 6 ILE A 371 LYS A 375 0 SHEET 2 AA2 6 HIS A 426 LEU A 440 -1 O ALA A 427 N VAL A 374 SHEET 3 AA2 6 ALA A 403 VAL A 409 -1 N ALA A 403 O LEU A 440 SHEET 4 AA2 6 SER A 390 ALA A 397 -1 N PHE A 395 O LEU A 404 SHEET 5 AA2 6 SER A 350 CYS A 357 1 N MET A 355 O ILE A 394 SHEET 6 AA2 6 GLU A 463 MET A 464 -1 O MET A 464 N TYR A 352 SITE 1 AC1 3 ASP A 342 ARG A 381 ASN A 402 SITE 1 AC2 7 ASP A 377 SER A 378 ALA A 443 SER A 446 SITE 2 AC2 7 GLU A 447 SER A 450 ASP A 460 CRYST1 77.406 77.406 66.211 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012919 0.007459 0.000000 0.00000 SCALE2 0.000000 0.014917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015103 0.00000