HEADER RNA BINDING PROTEIN 14-FEB-18 6FQL TITLE CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS IN COMPLEX TITLE 2 WITH MAB-10 3'UTR 13MER RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM71; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN LIN-41 HOMOLOG,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 5 TRIM71,TRIPARTITE MOTIF-CONTAINING PROTEIN 71; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: FRAGMENT: LIN41 FILAMIN-NHL DOMAINS (RESIDUES 435- COMPND 9 824); COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RNA (5'-R(*UP*GP*CP*AP*UP*UP*UP*AP*AP*UP*GP*CP*A)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: FRAGMENT OF C. ELEGANS MAB-10 3'UTR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: TRIM71, LIN41; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: SF9; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 13 ORGANISM_TAXID: 6239 KEYWDS POST-TRANSCRIPTIONAL REGULATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMARI,F.AESCHIMANN,D.GAIDATZIS,J.J.KEUSCH,P.GHOSH,A.NEAGU, AUTHOR 2 K.PACHULSKA-WIECZOREK,J.M.BUJNICKI,H.GUT,H.GROSSHANS,R.CIOSK REVDAT 2 17-JAN-24 6FQL 1 REMARK REVDAT 1 09-MAY-18 6FQL 0 JRNL AUTH P.KUMARI,F.AESCHIMANN,D.GAIDATZIS,J.J.KEUSCH,P.GHOSH, JRNL AUTH 2 A.NEAGU,K.PACHULSKA-WIECZOREK,J.M.BUJNICKI,H.GUT, JRNL AUTH 3 H.GROSSHANS,R.CIOSK JRNL TITL EVOLUTIONARY PLASTICITY OF THE NHL DOMAIN UNDERLIES DISTINCT JRNL TITL 2 SOLUTIONS TO RNA RECOGNITION. JRNL REF NAT COMMUN V. 9 1549 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29674686 JRNL DOI 10.1038/S41467-018-03920-7 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3087 - 5.0591 1.00 2757 146 0.1501 0.1732 REMARK 3 2 5.0591 - 4.0163 1.00 2643 139 0.1271 0.1417 REMARK 3 3 4.0163 - 3.5088 1.00 2628 138 0.1639 0.2415 REMARK 3 4 3.5088 - 3.1881 1.00 2612 138 0.1915 0.2501 REMARK 3 5 3.1881 - 2.9596 1.00 2592 136 0.2084 0.2720 REMARK 3 6 2.9596 - 2.7851 1.00 2595 137 0.2158 0.2418 REMARK 3 7 2.7851 - 2.6457 1.00 2595 136 0.2184 0.2475 REMARK 3 8 2.6457 - 2.5305 1.00 2549 133 0.2317 0.3167 REMARK 3 9 2.5305 - 2.4331 1.00 2590 137 0.2647 0.3014 REMARK 3 10 2.4331 - 2.3492 0.94 2430 128 0.2946 0.3279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3389 REMARK 3 ANGLE : 0.842 4639 REMARK 3 CHIRALITY : 0.056 493 REMARK 3 PLANARITY : 0.005 581 REMARK 3 DIHEDRAL : 12.948 1950 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 166.9065-197.9677 332.7507 REMARK 3 T TENSOR REMARK 3 T11: 0.3557 T22: 0.5642 REMARK 3 T33: 0.6328 T12: -0.0021 REMARK 3 T13: 0.0812 T23: 0.0969 REMARK 3 L TENSOR REMARK 3 L11: 3.9822 L22: 4.7614 REMARK 3 L33: 4.1149 L12: -0.4839 REMARK 3 L13: -0.0473 L23: -0.4177 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.2899 S13: -0.3576 REMARK 3 S21: 0.1265 S22: 0.0982 S23: 0.5638 REMARK 3 S31: -0.0230 S32: -0.3891 S33: -0.0919 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 824 ) REMARK 3 ORIGIN FOR THE GROUP (A): 132.3950-183.3116 339.7985 REMARK 3 T TENSOR REMARK 3 T11: 0.6527 T22: 0.4952 REMARK 3 T33: 0.4241 T12: 0.0782 REMARK 3 T13: 0.0902 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.0119 L22: 2.6013 REMARK 3 L33: 2.4074 L12: 0.4467 REMARK 3 L13: 0.0805 L23: 0.3593 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: 0.5098 S13: -0.0297 REMARK 3 S21: -0.9191 S22: 0.0334 S23: -0.2868 REMARK 3 S31: -0.1391 S32: 0.0098 S33: -0.1039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 112.8868-174.4037 351.5375 REMARK 3 T TENSOR REMARK 3 T11: 0.7046 T22: 0.7612 REMARK 3 T33: 0.6922 T12: 0.0753 REMARK 3 T13: -0.1163 T23: -0.1043 REMARK 3 L TENSOR REMARK 3 L11: 6.5495 L22: 3.3678 REMARK 3 L33: 6.9122 L12: -0.4725 REMARK 3 L13: -2.4924 L23: 0.7567 REMARK 3 S TENSOR REMARK 3 S11: 0.3928 S12: 0.2962 S13: 0.3561 REMARK 3 S21: -0.1309 S22: -0.3116 S23: 0.5714 REMARK 3 S31: 0.1170 S32: -1.1334 S33: -0.0835 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.349 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 16.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 15.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 2.46800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000 20% ETHYLENE GLYCOL 0.1 M REMARK 280 CARBOXYLIC ACIDS 0.1 M MES/IMIDAZOLE PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.31333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.62667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.62667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.31333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 416 REMARK 465 ALA A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 GLY A 426 REMARK 465 LEU A 427 REMARK 465 GLU A 428 REMARK 465 VAL A 429 REMARK 465 LEU A 430 REMARK 465 PHE A 431 REMARK 465 GLN A 432 REMARK 465 GLY A 433 REMARK 465 PRO A 434 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 451 -50.70 -120.63 REMARK 500 TRP A 566 -71.17 -133.82 REMARK 500 HIS A 596 -59.58 -120.92 REMARK 500 TYR A 658 71.40 63.74 REMARK 500 ARG A 707 -81.03 -126.47 REMARK 500 ARG A 752 62.54 60.84 REMARK 500 GLN A 754 -105.14 -117.84 REMARK 500 SER A 801 -104.25 -115.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 908 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FPT RELATED DB: PDB REMARK 900 6FPT CONTAINS THE SAME PROTEIN IN UNLIGANDED STATE REMARK 900 RELATED ID: 6FQ3 RELATED DB: PDB REMARK 900 6FQ3 CONTAINS THE SAME PROTEIN IN COMPLEX WITH LIN-29A RNA DBREF 6FQL A 435 824 UNP E7FAM5 LIN41_DANRE 435 824 DBREF 6FQL B 1 13 PDB 6FQL 6FQL 1 13 SEQADV 6FQL MET A 416 UNP E7FAM5 INITIATING METHIONINE SEQADV 6FQL ALA A 417 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL HIS A 418 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL HIS A 419 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL HIS A 420 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL HIS A 421 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL HIS A 422 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL HIS A 423 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL SER A 424 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL SER A 425 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL GLY A 426 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL LEU A 427 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL GLU A 428 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL VAL A 429 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL LEU A 430 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL PHE A 431 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL GLN A 432 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL GLY A 433 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQL PRO A 434 UNP E7FAM5 EXPRESSION TAG SEQRES 1 A 409 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 409 VAL LEU PHE GLN GLY PRO SER SER GLY ALA PHE ALA THR SEQRES 3 A 409 ALA SER LYS ALA HIS GLY GLU GLY ILE LYS ARG ALA LEU SEQRES 4 A 409 GLN GLY LYS PRO ALA SER PHE THR VAL VAL GLY TYR ASP SEQRES 5 A 409 HIS ASP GLY GLU PRO ARG LEU SER GLY GLY ASP SER VAL SEQRES 6 A 409 SER VAL VAL LEU MET SER PRO ASP GLY ASN LEU SER SER SEQRES 7 A 409 ALA GLU VAL SER ASP HIS GLN ASP GLY THR TYR THR VAL SEQRES 8 A 409 SER TYR LEU PRO LYS GLY GLU GLY GLU HIS LEU LEU SER SEQRES 9 A 409 VAL LEU ILE CYS ASN GLN HIS ILE GLU GLY SER PRO PHE SEQRES 10 A 409 LYS VAL MET VAL LYS SER GLY ARG SER TYR GLY GLY VAL SEQRES 11 A 409 GLY LEU PRO MET ALA SER PHE GLY GLY GLU GLY ASP GLY SEQRES 12 A 409 ASP GLY GLN LEU CYS ARG PRO TRP GLY ILE CYS VAL ASP SEQRES 13 A 409 LYS GLU GLY TYR VAL VAL VAL ALA ASP ARG SER ASN ASN SEQRES 14 A 409 ARG VAL GLN ILE PHE LYS PRO CYS GLY THR PHE HIS HIS SEQRES 15 A 409 LYS PHE GLY THR LEU GLY SER ARG PRO GLY GLN PHE ASP SEQRES 16 A 409 ARG PRO ALA GLY VAL ALA CYS ASP SER GLN ARG ARG ILE SEQRES 17 A 409 ILE VAL ALA ASP LYS ASP ASN HIS ARG ILE GLN ILE PHE SEQRES 18 A 409 THR PHE ASP GLY GLN PHE LEU LEU LYS PHE GLY GLU LYS SEQRES 19 A 409 GLY THR LYS ASN GLY GLN PHE ASN TYR PRO TRP ASP VAL SEQRES 20 A 409 ALA VAL ASN PHE GLU GLY LYS ILE LEU VAL SER ASP THR SEQRES 21 A 409 ARG ASN HIS ARG VAL GLN LEU PHE GLY PRO ASP GLY THR SEQRES 22 A 409 PHE LEU ASN LYS TYR GLY PHE GLU GLY ALA LEU TRP LYS SEQRES 23 A 409 HIS PHE ASP SER PRO ARG GLY VAL ALA PHE ASN GLN GLU SEQRES 24 A 409 GLY HIS LEU VAL VAL THR ASP PHE ASN ASN HIS ARG LEU SEQRES 25 A 409 LEU VAL ILE ARG PRO ASP CYS GLN SER ALA ARG PHE LEU SEQRES 26 A 409 GLY SER GLU GLY THR GLY ASN GLY GLN PHE LEU ARG PRO SEQRES 27 A 409 GLN GLY VAL ALA VAL ASP GLN GLU ASP ARG ILE ILE VAL SEQRES 28 A 409 ALA ASP SER ARG ASN HIS ARG ILE GLN VAL PHE GLU PRO SEQRES 29 A 409 ASN GLY ASN PHE LEU CYS LYS PHE GLY THR HIS GLY ASN SEQRES 30 A 409 GLY PHE GLY GLN MET ASP ARG PRO SER GLY ILE ALA VAL SEQRES 31 A 409 THR PRO ASP GLY VAL ILE VAL ALA VAL ASP PHE GLY ASN SEQRES 32 A 409 ASN ARG ILE LEU MET PHE SEQRES 1 B 13 U G C A U U U A A U G C A HET CL A 901 1 HET CL A 902 1 HET CL A 903 1 HET CL A 904 1 HET CL A 905 1 HET CL A 906 1 HET CL A 907 1 HET CL A 908 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 8(CL 1-) FORMUL 11 HOH *92(H2 O) HELIX 1 AA1 PHE A 439 SER A 443 5 5 HELIX 2 AA2 GLY A 447 ILE A 450 5 4 HELIX 3 AA3 ARG A 581 ASN A 584 5 4 HELIX 4 AA4 LYS A 628 HIS A 631 5 4 HELIX 5 AA5 GLU A 696 ASP A 704 5 9 HELIX 6 AA6 ARG A 770 HIS A 772 5 3 SHEET 1 AA1 4 LYS A 444 HIS A 446 0 SHEET 2 AA1 4 ALA A 459 VAL A 464 -1 O VAL A 464 N LYS A 444 SHEET 3 AA1 4 THR A 503 TYR A 508 -1 O VAL A 506 N PHE A 461 SHEET 4 AA1 4 GLU A 495 ASP A 498 -1 N GLU A 495 O SER A 507 SHEET 1 AA2 5 ARG A 452 LEU A 454 0 SHEET 2 AA2 5 PHE A 532 LYS A 537 1 O LYS A 537 N ALA A 453 SHEET 3 AA2 5 GLY A 514 ILE A 522 -1 N HIS A 516 O VAL A 534 SHEET 4 AA2 5 VAL A 480 MET A 485 -1 N VAL A 483 O SER A 519 SHEET 5 AA2 5 LEU A 491 SER A 492 -1 O SER A 492 N LEU A 484 SHEET 1 AA3 4 ARG A 452 LEU A 454 0 SHEET 2 AA3 4 PHE A 532 LYS A 537 1 O LYS A 537 N ALA A 453 SHEET 3 AA3 4 GLY A 514 ILE A 522 -1 N HIS A 516 O VAL A 534 SHEET 4 AA3 4 GLN A 525 HIS A 526 -1 O GLN A 525 N ILE A 522 SHEET 1 AA4 4 ALA A 550 GLY A 553 0 SHEET 2 AA4 4 ARG A 820 MET A 823 -1 O ILE A 821 N PHE A 552 SHEET 3 AA4 4 ILE A 811 ASP A 815 -1 N ALA A 813 O LEU A 822 SHEET 4 AA4 4 PRO A 800 VAL A 805 -1 N ALA A 804 O VAL A 812 SHEET 1 AA5 4 ILE A 568 VAL A 570 0 SHEET 2 AA5 4 VAL A 576 ASP A 580 -1 O VAL A 577 N CYS A 569 SHEET 3 AA5 4 ARG A 585 PHE A 589 -1 O PHE A 589 N VAL A 576 SHEET 4 AA5 4 PHE A 595 PHE A 599 -1 O HIS A 597 N ILE A 588 SHEET 1 AA6 4 ALA A 616 CYS A 617 0 SHEET 2 AA6 4 ILE A 623 ASP A 627 -1 O ILE A 624 N ALA A 616 SHEET 3 AA6 4 ARG A 632 PHE A 636 -1 O PHE A 636 N ILE A 623 SHEET 4 AA6 4 PHE A 642 PHE A 646 -1 O LEU A 643 N ILE A 635 SHEET 1 AA7 4 PRO A 659 VAL A 664 0 SHEET 2 AA7 4 ILE A 670 ASP A 674 -1 O LEU A 671 N ALA A 663 SHEET 3 AA7 4 ARG A 679 PHE A 683 -1 O PHE A 683 N ILE A 670 SHEET 4 AA7 4 PHE A 689 GLY A 694 -1 O ASN A 691 N LEU A 682 SHEET 1 AA8 4 PRO A 706 PHE A 711 0 SHEET 2 AA8 4 LEU A 717 ASP A 721 -1 O VAL A 718 N ALA A 710 SHEET 3 AA8 4 ARG A 726 ILE A 730 -1 O ILE A 730 N LEU A 717 SHEET 4 AA8 4 ALA A 737 LEU A 740 -1 O LEU A 740 N LEU A 727 SHEET 1 AA9 2 SER A 742 GLU A 743 0 SHEET 2 AA9 2 GLN A 749 PHE A 750 1 O PHE A 750 N SER A 742 SHEET 1 AB1 4 PRO A 753 VAL A 758 0 SHEET 2 AB1 4 ILE A 764 ASP A 768 -1 O ALA A 767 N GLN A 754 SHEET 3 AB1 4 ARG A 773 PHE A 777 -1 O GLN A 775 N VAL A 766 SHEET 4 AB1 4 PHE A 783 PHE A 787 -1 O CYS A 785 N VAL A 776 SHEET 1 AB2 2 THR A 789 HIS A 790 0 SHEET 2 AB2 2 GLN A 796 MET A 797 1 O MET A 797 N THR A 789 CISPEP 1 SER A 530 PRO A 531 0 -0.10 SITE 1 AC1 1 GLU A 555 SITE 1 AC2 1 ASN A 653 SITE 1 AC3 1 HIS A 678 SITE 1 AC4 3 ARG A 676 A B 9 HOH B 112 SITE 1 AC5 1 ARG A 564 SITE 1 AC6 1 ARG A 726 CRYST1 101.490 101.490 108.940 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009853 0.005689 0.000000 0.00000 SCALE2 0.000000 0.011377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009179 0.00000