HEADER IMMUNE SYSTEM 15-FEB-18 6FR5 TITLE HA1.7 TCR STUDY OF CDR LOOP FLEXIBILITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TCR HA1.7 SPECIFIC FOR FLU EPITOPE PKYVKQNTLKLAT, ALPHA COMPND 3 CHAIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TCR HA1.7 SPECIFIC FOR FLU EPITOPE PKYVKQNTLKLAT, BETA COMPND 8 CHAIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 003 TCR, CDR FLEXIBILITY, IMMUNE SYSTEM, 3D STRUCTURE, MHC CLASS II EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 3 17-JAN-24 6FR5 1 REMARK REVDAT 2 09-MAY-18 6FR5 1 COMPND JRNL HETNAM REVDAT 1 18-APR-18 6FR5 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.RIZKALLAH,D.K.COLE REMARK 1 TITL FLEXIBILITY STUDY OF CDRS IN 003 TCR REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 87273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4602 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 315 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3497 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.976 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3918 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3445 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5324 ; 1.842 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8070 ; 1.030 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 6.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.579 ;24.555 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;12.523 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.164 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4463 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1904 ; 0.824 ; 1.122 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1902 ; 0.818 ; 1.119 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2413 ; 1.368 ; 1.676 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2414 ; 1.369 ; 1.678 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2014 ; 1.324 ; 1.330 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2014 ; 1.323 ; 1.330 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2901 ; 1.919 ; 1.898 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4121 ; 4.607 ;14.205 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4043 ; 4.559 ;13.694 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4802 -47.9896 113.5394 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0089 REMARK 3 T33: 0.0373 T12: 0.0069 REMARK 3 T13: -0.0146 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.1122 L22: 0.8999 REMARK 3 L33: 2.2034 L12: -0.0439 REMARK 3 L13: -0.3363 L23: 0.4453 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0796 S13: 0.0465 REMARK 3 S21: -0.0951 S22: -0.0435 S23: -0.0105 REMARK 3 S31: -0.0083 S32: -0.0191 S33: 0.0547 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3885 -65.3143 138.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.0031 T22: 0.0482 REMARK 3 T33: 0.0214 T12: 0.0020 REMARK 3 T13: -0.0058 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.1697 L22: 3.5489 REMARK 3 L33: 1.9145 L12: 1.5282 REMARK 3 L13: 0.4573 L23: 0.7748 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: -0.1331 S13: -0.1166 REMARK 3 S21: 0.0834 S22: 0.0292 S23: -0.1458 REMARK 3 S31: 0.0587 S32: 0.0884 S33: -0.0639 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1338 -53.2309 100.3984 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0138 REMARK 3 T33: 0.0207 T12: -0.0032 REMARK 3 T13: -0.0140 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.5614 L22: 2.6453 REMARK 3 L33: 1.4206 L12: 0.7391 REMARK 3 L13: -0.1075 L23: -0.3129 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0959 S13: 0.1434 REMARK 3 S21: 0.0190 S22: 0.0093 S23: -0.0310 REMARK 3 S31: -0.0623 S32: 0.0886 S33: 0.0404 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8412 -62.1420 127.0225 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0066 REMARK 3 T33: 0.0059 T12: 0.0008 REMARK 3 T13: 0.0023 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.0083 L22: 1.2360 REMARK 3 L33: 3.3666 L12: 0.3421 REMARK 3 L13: 0.5492 L23: 0.8698 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0699 S13: -0.0702 REMARK 3 S21: -0.0992 S22: 0.0069 S23: -0.0139 REMARK 3 S31: 0.1213 S32: 0.0197 S33: 0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 40.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EH4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA CITRATE, 0.1M TRISHCL, 30% PEG REMARK 280 400, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.59000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 126 O HOH A 401 1.96 REMARK 500 O HOH A 402 O HOH A 505 2.05 REMARK 500 NZ LYS A 132 OXT ACT B 312 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 118 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 131 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 158 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU B 44 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 64 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 68 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 68 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 88 171.61 176.23 REMARK 500 ASN A 98 22.80 -140.31 REMARK 500 ASP A 118 53.97 -149.38 REMARK 500 LEU B 47 -61.99 -95.86 REMARK 500 SER B 73 -8.47 79.74 REMARK 500 ASP B 97 108.34 -170.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 575 DISTANCE = 6.01 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 312 DBREF 6FR5 A 1 203 PDB 6FR5 6FR5 1 203 DBREF 6FR5 B 1 244 PDB 6FR5 6FR5 1 244 SEQRES 1 A 202 MET LYS GLN GLU VAL THR GLN ILE PRO ALA ALA LEU SER SEQRES 2 A 202 VAL PRO GLU GLY GLU ASN LEU VAL LEU ASN CYS SER PHE SEQRES 3 A 202 THR ASP SER ALA ILE TYR ASN LEU GLN TRP PHE ARG GLN SEQRES 4 A 202 ASP PRO GLY LYS GLY LEU THR SER LEU LEU LEU ILE GLN SEQRES 5 A 202 SER SER GLN ARG GLU GLN THR SER GLY ARG LEU ASN ALA SEQRES 6 A 202 SER LEU ASP LYS SER SER GLY ARG SER THR LEU TYR ILE SEQRES 7 A 202 ALA ALA SER GLN PRO GLY ASP SER ALA THR TYR LEU CYS SEQRES 8 A 202 ALA VAL THR ASN PHE ASN LYS PHE TYR PHE GLY SER GLY SEQRES 9 A 202 THR LYS LEU ASN VAL LYS PRO ASN ILE GLN ASN PRO ASP SEQRES 10 A 202 PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP SEQRES 11 A 202 LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR SEQRES 12 A 202 ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR SEQRES 13 A 202 ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SEQRES 14 A 202 SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE SEQRES 15 A 202 ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU SEQRES 16 A 202 ASP THR PHE PHE PRO SER PRO SEQRES 1 B 244 MET LYS ALA GLY VAL THR GLN THR PRO ARG TYR LEU ILE SEQRES 2 B 244 LYS THR ARG GLY GLN GLN VAL THR LEU SER CYS SER PRO SEQRES 3 B 244 ILE SER GLY HIS ARG SER VAL SER TRP TYR GLN GLN THR SEQRES 4 B 244 PRO GLY GLN GLY LEU GLN PHE LEU PHE GLU TYR PHE SER SEQRES 5 B 244 GLU THR GLN ARG ASN LYS GLY ASN PHE PRO GLY ARG PHE SEQRES 6 B 244 SER GLY ARG GLN PHE SER ASN SER ARG SER GLU MET ASN SEQRES 7 B 244 VAL SER THR LEU GLU LEU GLY ASP SER ALA LEU TYR LEU SEQRES 8 B 244 CYS ALA SER SER PHE ASP SER GLY ASN SER PRO LEU HIS SEQRES 9 B 244 PHE GLY ASN GLY THR ARG LEU THR VAL THR GLU ASP LEU SEQRES 10 B 244 ASN LYS VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 B 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 B 244 VAL CYS LEU ALA THR GLY PHE PHE PRO ASP HIS VAL GLU SEQRES 13 B 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 B 244 VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 B 244 LEU ASN ASP SER ARG TYR SER LEU SER SER ARG LEU ARG SEQRES 16 B 244 VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE SEQRES 17 B 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 B 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 B 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET GOL A 310 6 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HET GOL B 308 6 HET GOL B 309 6 HET GOL B 310 6 HET GOL B 311 6 HET ACT B 312 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 16(C2 H6 O2) FORMUL 12 GOL 5(C3 H8 O3) FORMUL 24 ACT C2 H3 O2 1- FORMUL 25 HOH *379(H2 O) HELIX 1 AA1 GLN A 83 SER A 87 5 5 HELIX 2 AA2 ARG A 165 ASP A 168 5 4 HELIX 3 AA3 ALA A 184 PHE A 189 1 6 HELIX 4 AA4 GLU B 83 SER B 87 5 5 HELIX 5 AA5 ASP B 116 VAL B 120 5 5 HELIX 6 AA6 SER B 131 GLN B 139 1 9 HELIX 7 AA7 ALA B 198 GLN B 202 1 5 SHEET 1 AA1 5 VAL A 5 ILE A 8 0 SHEET 2 AA1 5 LEU A 21 PHE A 27 -1 O SER A 26 N THR A 6 SHEET 3 AA1 5 ARG A 74 ILE A 79 -1 O LEU A 77 N LEU A 23 SHEET 4 AA1 5 LEU A 64 ASP A 69 -1 N ASN A 65 O TYR A 78 SHEET 5 AA1 5 GLU A 58 SER A 61 -1 N GLN A 59 O ALA A 66 SHEET 1 AA2 5 ALA A 11 PRO A 15 0 SHEET 2 AA2 5 THR A 106 LYS A 111 1 O ASN A 109 N LEU A 12 SHEET 3 AA2 5 ALA A 88 THR A 95 -1 N ALA A 88 O LEU A 108 SHEET 4 AA2 5 ASN A 34 GLN A 40 -1 N GLN A 36 O ALA A 93 SHEET 5 AA2 5 LEU A 46 GLN A 53 -1 O ILE A 52 N LEU A 35 SHEET 1 AA3 4 ALA A 11 PRO A 15 0 SHEET 2 AA3 4 THR A 106 LYS A 111 1 O ASN A 109 N LEU A 12 SHEET 3 AA3 4 ALA A 88 THR A 95 -1 N ALA A 88 O LEU A 108 SHEET 4 AA3 4 PHE A 100 PHE A 102 -1 O TYR A 101 N VAL A 94 SHEET 1 AA4 4 ALA A 120 GLN A 123 0 SHEET 2 AA4 4 SER A 133 THR A 138 -1 O LEU A 136 N TYR A 122 SHEET 3 AA4 4 PHE A 169 SER A 178 -1 O ALA A 176 N CYS A 135 SHEET 4 AA4 4 TYR A 155 ILE A 156 -1 N TYR A 155 O TRP A 177 SHEET 1 AA5 4 ALA A 120 GLN A 123 0 SHEET 2 AA5 4 SER A 133 THR A 138 -1 O LEU A 136 N TYR A 122 SHEET 3 AA5 4 PHE A 169 SER A 178 -1 O ALA A 176 N CYS A 135 SHEET 4 AA5 4 CYS A 160 MET A 164 -1 N MET A 164 O PHE A 169 SHEET 1 AA6 4 THR B 6 THR B 8 0 SHEET 2 AA6 4 VAL B 20 SER B 25 -1 O SER B 23 N THR B 8 SHEET 3 AA6 4 SER B 75 VAL B 79 -1 O MET B 77 N LEU B 22 SHEET 4 AA6 4 PHE B 65 GLN B 69 -1 N SER B 66 O ASN B 78 SHEET 1 AA7 6 TYR B 11 THR B 15 0 SHEET 2 AA7 6 THR B 109 THR B 114 1 O THR B 112 N LEU B 12 SHEET 3 AA7 6 ALA B 88 SER B 95 -1 N TYR B 90 O THR B 109 SHEET 4 AA7 6 SER B 32 THR B 39 -1 N SER B 34 O ALA B 93 SHEET 5 AA7 6 GLY B 43 PHE B 51 -1 O TYR B 50 N VAL B 33 SHEET 6 AA7 6 THR B 54 LYS B 58 -1 O ARG B 56 N GLU B 49 SHEET 1 AA8 4 TYR B 11 THR B 15 0 SHEET 2 AA8 4 THR B 109 THR B 114 1 O THR B 112 N LEU B 12 SHEET 3 AA8 4 ALA B 88 SER B 95 -1 N TYR B 90 O THR B 109 SHEET 4 AA8 4 HIS B 104 PHE B 105 -1 O HIS B 104 N SER B 94 SHEET 1 AA9 4 GLU B 124 PHE B 128 0 SHEET 2 AA9 4 LYS B 140 PHE B 150 -1 O VAL B 144 N PHE B 128 SHEET 3 AA9 4 TYR B 188 SER B 197 -1 O LEU B 194 N LEU B 143 SHEET 4 AA9 4 VAL B 170 THR B 172 -1 N CYS B 171 O ARG B 193 SHEET 1 AB1 4 GLU B 124 PHE B 128 0 SHEET 2 AB1 4 LYS B 140 PHE B 150 -1 O VAL B 144 N PHE B 128 SHEET 3 AB1 4 TYR B 188 SER B 197 -1 O LEU B 194 N LEU B 143 SHEET 4 AB1 4 LEU B 177 LYS B 178 -1 N LEU B 177 O SER B 189 SHEET 1 AB2 4 LYS B 164 VAL B 166 0 SHEET 2 AB2 4 VAL B 155 VAL B 161 -1 N VAL B 161 O LYS B 164 SHEET 3 AB2 4 HIS B 207 PHE B 214 -1 O GLN B 211 N SER B 158 SHEET 4 AB2 4 GLN B 233 TRP B 240 -1 O ALA B 239 N PHE B 208 SSBOND 1 CYS A 25 CYS A 92 1555 1555 2.02 SSBOND 2 CYS A 135 CYS A 185 1555 1555 2.07 SSBOND 3 CYS A 160 CYS B 171 1555 1555 2.07 SSBOND 4 CYS B 24 CYS B 92 1555 1555 1.95 SSBOND 5 CYS B 145 CYS B 210 1555 1555 2.01 CISPEP 1 ILE A 8 PRO A 9 0 -5.21 CISPEP 2 THR B 8 PRO B 9 0 -8.74 CISPEP 3 THR B 8 PRO B 9 0 -6.78 CISPEP 4 PHE B 151 PRO B 152 0 -4.37 SITE 1 AC1 8 SER A 26 SER A 72 HOH A 430 HOH A 438 SITE 2 AC1 8 HOH A 523 THR B 8 PRO B 9 ARG B 10 SITE 1 AC2 5 SER A 67 LEU A 68 ASP A 69 ARG A 74 SITE 2 AC2 5 THR A 76 SITE 1 AC3 6 ARG A 39 GLN A 40 ASP A 41 LYS A 44 SITE 2 AC3 6 GLY A 45 THR A 47 SITE 1 AC4 4 SER A 26 HOH A 409 HOH A 461 ARG B 10 SITE 1 AC5 2 ALA A 80 HOH A 417 SITE 1 AC6 7 PRO A 15 GLU A 17 LYS A 111 PRO A 112 SITE 2 AC6 7 ASN A 113 HOH A 496 HOH A 564 SITE 1 AC7 5 VAL A 146 GLN A 148 ILE A 156 THR A 157 SITE 2 AC7 5 ASP A 158 SITE 1 AC8 4 GLN A 123 PHE A 183 ALA A 184 CYS A 185 SITE 1 AC9 4 ALA A 31 ILE A 32 TYR A 33 LYS A 70 SITE 1 AD1 6 VAL A 121 ALA A 186 PRO A 201 PRO A 203 SITE 2 AD1 6 HOH A 407 GOL B 311 SITE 1 AD2 5 ARG B 10 ASN B 107 GLY B 108 HOH B 475 SITE 2 AD2 5 HOH B 477 SITE 1 AD3 8 VAL A 22 ASN A 24 TRP B 160 GLN B 211 SITE 2 AD3 8 GLN B 213 HOH B 492 HOH B 513 HOH B 522 SITE 1 AD4 3 GLN B 202 ALA B 243 HOH B 463 SITE 1 AD5 7 GLU B 156 SER B 158 GLU B 165 GLN B 213 SITE 2 AD5 7 HOH B 426 HOH B 464 HOH B 522 SITE 1 AD6 8 TYR B 11 LEU B 12 ILE B 13 HIS B 154 SITE 2 AD6 8 TYR B 215 GLY B 216 HOH B 403 HOH B 472 SITE 1 AD7 4 ARG B 31 SER B 52 GLU B 53 SER B 71 SITE 1 AD8 2 ASN B 72 ARG B 74 SITE 1 AD9 7 SER A 127 SER A 129 ALA B 126 VAL B 127 SITE 2 AD9 7 ALA B 237 GLU B 238 HOH B 459 SITE 1 AE1 8 LEU A 91 PHE A 102 GLY A 103 SER A 104 SITE 2 AE1 8 GLN B 42 GLY B 43 LEU B 44 HOH B 520 SITE 1 AE2 5 PHE B 200 HOH B 409 HOH B 424 HOH B 442 SITE 2 AE2 5 HOH B 446 SITE 1 AE3 9 TYR A 122 GLN A 123 PRO A 203 GOL A 310 SITE 2 AE3 9 HOH A 407 SER B 131 GLU B 132 ALA B 133 SITE 3 AE3 9 HOH B 417 SITE 1 AE4 5 SER A 130 LYS A 132 GLU B 124 LEU B 146 SITE 2 AE4 5 THR B 148 CRYST1 43.080 81.180 64.790 90.00 90.37 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023213 0.000000 0.000150 0.00000 SCALE2 0.000000 0.012318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015435 0.00000