HEADER IMMUNE SYSTEM 15-FEB-18 6FR6 TITLE HA1.7 HUMAN T-CELL RECEPTOR SPECIFIC FOR INFLUENZA VIRUS EPITOPE TITLE 2 PKYVKQNTLKLAT PRESENTED BY HUMAN LEUKOCYTE ANTIGEN HLA-DR0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN T-CELL RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN T-CELL RECEPTOR BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN T CELL RECEPTOR, HUMAN LEUKOCUTE ANTIGEN, INFLUENZA KEYWDS 2 HAEMAGGLUTININ EPITOPE, 3D STRUCTURE, IMMUNE SYSTEM, MHC CLASS II EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 3 17-JAN-24 6FR6 1 REMARK REVDAT 2 09-MAY-18 6FR6 1 JRNL REVDAT 1 18-APR-18 6FR6 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 9958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 502 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : 2.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.544 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.452 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 55.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.816 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3628 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3205 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4928 ; 1.957 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7474 ; 1.110 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 9.944 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;39.396 ;24.269 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;21.569 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4041 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1777 ; 0.616 ; 1.970 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1776 ; 0.616 ; 1.970 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2220 ; 1.096 ; 2.954 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2221 ; 1.096 ; 2.954 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1851 ; 0.583 ; 2.047 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1844 ; 0.504 ; 2.012 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2696 ; 0.891 ; 3.003 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3844 ; 2.970 ;22.230 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3845 ; 2.970 ;22.232 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2838 4.2499 36.5163 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.0259 REMARK 3 T33: 0.1013 T12: 0.0123 REMARK 3 T13: 0.0737 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.8541 L22: 4.0537 REMARK 3 L33: 6.2347 L12: 0.0088 REMARK 3 L13: -0.9395 L23: -0.0406 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.3137 S13: 0.1659 REMARK 3 S21: 0.2064 S22: 0.1398 S23: 0.0448 REMARK 3 S31: -0.1594 S32: 0.0504 S33: -0.0695 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6399 2.0627 6.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.6052 T22: 0.6898 REMARK 3 T33: 0.0775 T12: -0.0437 REMARK 3 T13: 0.1132 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 12.1685 L22: 6.2611 REMARK 3 L33: 2.8616 L12: -2.1283 REMARK 3 L13: -0.1368 L23: 0.1362 REMARK 3 S TENSOR REMARK 3 S11: -0.1340 S12: 0.3123 S13: -0.3602 REMARK 3 S21: -0.1857 S22: 0.2445 S23: -0.4654 REMARK 3 S31: 0.1416 S32: 0.4322 S33: -0.1105 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0351 8.7508 47.4915 REMARK 3 T TENSOR REMARK 3 T11: 0.3163 T22: 0.5171 REMARK 3 T33: 0.0628 T12: 0.0421 REMARK 3 T13: -0.0406 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 6.6229 L22: 3.8041 REMARK 3 L33: 3.7271 L12: -2.3597 REMARK 3 L13: -2.5153 L23: 1.2082 REMARK 3 S TENSOR REMARK 3 S11: -0.2396 S12: -0.1104 S13: 0.0952 REMARK 3 S21: 0.4908 S22: 0.2317 S23: -0.4463 REMARK 3 S31: 0.2571 S32: 1.0843 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2527 11.8742 17.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.3827 T22: 0.7131 REMARK 3 T33: 0.1361 T12: -0.1750 REMARK 3 T13: 0.1681 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 3.5983 L22: 2.7742 REMARK 3 L33: 7.2837 L12: 0.1821 REMARK 3 L13: 1.8888 L23: 0.6970 REMARK 3 S TENSOR REMARK 3 S11: -0.2040 S12: 0.1998 S13: 0.1587 REMARK 3 S21: -0.1759 S22: 0.2379 S23: -0.4072 REMARK 3 S31: -0.4882 S32: 1.0695 S33: -0.0339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 36.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8K, 0.1 M TRIS, 0.2M NH4SO4, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.12000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 152 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 186 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 1 -14.90 -43.43 REMARK 500 CYS A 22 117.03 -164.22 REMARK 500 PRO A 29 114.88 -34.32 REMARK 500 PRO A 39 -75.93 -42.29 REMARK 500 THR A 71 45.99 75.02 REMARK 500 ASP A 84 23.93 -72.30 REMARK 500 ASP A 141 -6.54 57.18 REMARK 500 PHE A 142 175.35 -59.53 REMARK 500 ASP A 155 39.52 -88.21 REMARK 500 ASP A 160 160.80 -40.23 REMARK 500 CYS A 162 138.25 -173.21 REMARK 500 ARG A 167 -76.50 -18.91 REMARK 500 ASP A 170 19.37 42.25 REMARK 500 ALA A 190 -81.41 -48.58 REMARK 500 SER A 194 12.19 52.58 REMARK 500 PRO A 197 42.01 -98.21 REMARK 500 GLU A 198 44.06 -160.81 REMARK 500 THR B 15 112.03 -36.64 REMARK 500 ASP B 26 44.72 -104.31 REMARK 500 LYS B 53 -17.12 77.18 REMARK 500 PHE B 74 90.22 -177.46 REMARK 500 GLU B 79 -87.92 -87.78 REMARK 500 SER B 87 178.81 175.16 REMARK 500 ASP B 115 19.53 -157.51 REMARK 500 LEU B 116 145.78 -172.88 REMARK 500 LYS B 118 54.52 -116.43 REMARK 500 GLN B 138 6.99 57.46 REMARK 500 ASP B 152 79.30 -69.52 REMARK 500 PRO B 180 -4.85 -58.18 REMARK 500 ASN B 202 117.48 -169.53 REMARK 500 THR B 223 79.83 -158.76 REMARK 500 ALA B 227 160.05 -39.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 119 ASP A 120 148.56 REMARK 500 VAL B 113 GLU B 114 -138.61 REMARK 500 HIS B 166 SER B 167 -144.02 REMARK 500 GLU B 221 TRP B 222 148.41 REMARK 500 SER B 235 ALA B 236 147.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EH8 RELATED DB: PDB DBREF 6FR6 A 0 201 PDB 6FR6 6FR6 0 201 DBREF 6FR6 B 2 242 PDB 6FR6 6FR6 2 242 SEQRES 1 A 202 MET GLN SER VAL THR GLN LEU GLY SER HIS VAL SER VAL SEQRES 2 A 202 SER GLU GLY ALA LEU VAL LEU LEU ARG CYS ASN TYR SER SEQRES 3 A 202 SER SER VAL PRO PRO TYR LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 202 PRO ASN GLN GLY LEU GLN LEU LEU LEU LYS TYR THR SER SEQRES 5 A 202 ALA ALA THR LEU VAL LYS GLY ILE ASN GLY PHE GLU ALA SEQRES 6 A 202 GLU PHE LYS LYS SER GLU THR SER PHE HIS LEU THR LYS SEQRES 7 A 202 PRO SER ALA HIS MET SER ASP ALA ALA GLU TYR PHE CYS SEQRES 8 A 202 ALA VAL SER GLU SER PRO PHE GLY ASN GLU LYS LEU THR SEQRES 9 A 202 PHE GLY THR GLY THR ARG LEU THR ILE ILE PRO ASN ILE SEQRES 10 A 202 GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER SEQRES 11 A 202 LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE SEQRES 12 A 202 ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP SEQRES 13 A 202 VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER SEQRES 14 A 202 MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN SEQRES 15 A 202 LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 16 A 202 ILE ILE PRO GLU ASP THR PHE SEQRES 1 B 241 VAL LYS VAL THR GLN SER SER ARG TYR LEU VAL LYS ARG SEQRES 2 B 241 THR GLY GLU LYS VAL PHE LEU GLU CYS VAL GLN ASP MET SEQRES 3 B 241 ASP HIS GLU ASN MET PHE TRP TYR ARG GLN ASP PRO GLY SEQRES 4 B 241 LEU GLY LEU ARG LEU ILE TYR PHE SER TYR ASP VAL LYS SEQRES 5 B 241 MET LYS GLU LYS GLY ASP ILE PRO GLU GLY TYR SER VAL SEQRES 6 B 241 SER ARG GLU LYS LYS GLU ARG PHE SER LEU ILE LEU GLU SEQRES 7 B 241 SER ALA SER THR ASN GLN THR SER MET TYR LEU CYS ALA SEQRES 8 B 241 SER SER SER THR GLY LEU PRO TYR GLY TYR THR PHE GLY SEQRES 9 B 241 SER GLY THR ARG LEU THR VAL VAL GLU ASP LEU ASN LYS SEQRES 10 B 241 VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU SEQRES 11 B 241 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 B 241 LEU ALA THR GLY PHE PHE PRO ASP HIS VAL GLU LEU SER SEQRES 13 B 241 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 B 241 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 B 241 ASP SER ARG TYR SER LEU SER SER ARG LEU ARG VAL SER SEQRES 16 B 241 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 B 241 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 B 241 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 B 241 ALA GLU ALA TRP GLY ARG ALA HET SO4 A 301 5 HET SO4 B 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *19(H2 O) HELIX 1 AA1 HIS A 81 ALA A 85 5 5 HELIX 2 AA2 ARG A 167 ASP A 170 5 4 HELIX 3 AA3 SER B 82 THR B 86 5 5 HELIX 4 AA4 SER B 130 GLN B 138 1 9 HELIX 5 AA5 ALA B 197 GLN B 201 1 5 SHEET 1 AA1 2 SER A 2 THR A 4 0 SHEET 2 AA1 2 ASN A 23 SER A 25 -1 O ASN A 23 N THR A 4 SHEET 1 AA2 5 HIS A 9 SER A 13 0 SHEET 2 AA2 5 THR A 108 ILE A 113 1 O THR A 111 N VAL A 10 SHEET 3 AA2 5 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 AA2 5 TYR A 31 GLN A 37 -1 N TYR A 35 O PHE A 89 SHEET 5 AA2 5 GLN A 44 TYR A 49 -1 O LEU A 46 N TRP A 34 SHEET 1 AA3 4 HIS A 9 SER A 13 0 SHEET 2 AA3 4 THR A 108 ILE A 113 1 O THR A 111 N VAL A 10 SHEET 3 AA3 4 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 AA3 4 THR A 103 PHE A 104 -1 O THR A 103 N VAL A 92 SHEET 1 AA4 4 VAL A 18 LEU A 20 0 SHEET 2 AA4 4 SER A 72 LYS A 77 -1 O LYS A 77 N VAL A 18 SHEET 3 AA4 4 GLU A 63 LYS A 67 -1 N GLU A 63 O THR A 76 SHEET 4 AA4 4 LEU A 55 LYS A 57 -1 N VAL A 56 O ALA A 64 SHEET 1 AA5 3 ALA A 122 VAL A 123 0 SHEET 2 AA5 3 LYS A 134 THR A 140 -1 O THR A 140 N ALA A 122 SHEET 3 AA5 3 LEU A 126 ASP A 128 -1 N LEU A 126 O VAL A 136 SHEET 1 AA6 4 ALA A 122 VAL A 123 0 SHEET 2 AA6 4 LYS A 134 THR A 140 -1 O THR A 140 N ALA A 122 SHEET 3 AA6 4 PHE A 171 SER A 180 -1 O ALA A 178 N CYS A 137 SHEET 4 AA6 4 TYR A 157 MET A 166 -1 N TYR A 157 O TRP A 179 SHEET 1 AA7 2 VAL B 4 THR B 5 0 SHEET 2 AA7 2 VAL B 24 GLN B 25 -1 O VAL B 24 N THR B 5 SHEET 1 AA8 6 TYR B 10 ARG B 14 0 SHEET 2 AA8 6 THR B 108 VAL B 113 1 O THR B 111 N LYS B 13 SHEET 3 AA8 6 SER B 87 SER B 94 -1 N SER B 87 O LEU B 110 SHEET 4 AA8 6 ASN B 31 ASP B 38 -1 N GLN B 37 O MET B 88 SHEET 5 AA8 6 GLY B 42 SER B 49 -1 O ILE B 46 N TRP B 34 SHEET 6 AA8 6 GLU B 56 LYS B 57 -1 O GLU B 56 N PHE B 48 SHEET 1 AA9 4 TYR B 10 ARG B 14 0 SHEET 2 AA9 4 THR B 108 VAL B 113 1 O THR B 111 N LYS B 13 SHEET 3 AA9 4 SER B 87 SER B 94 -1 N SER B 87 O LEU B 110 SHEET 4 AA9 4 THR B 103 PHE B 104 -1 O THR B 103 N SER B 93 SHEET 1 AB1 3 VAL B 19 LEU B 21 0 SHEET 2 AB1 3 SER B 75 LEU B 78 -1 O LEU B 76 N LEU B 21 SHEET 3 AB1 3 SER B 65 SER B 67 -1 N SER B 65 O ILE B 77 SHEET 1 AB2 4 GLU B 123 PHE B 127 0 SHEET 2 AB2 4 LYS B 139 PHE B 149 -1 O THR B 147 N GLU B 123 SHEET 3 AB2 4 TYR B 187 SER B 196 -1 O TYR B 187 N PHE B 149 SHEET 4 AB2 4 VAL B 169 THR B 171 -1 N CYS B 170 O ARG B 192 SHEET 1 AB3 4 GLU B 123 PHE B 127 0 SHEET 2 AB3 4 LYS B 139 PHE B 149 -1 O THR B 147 N GLU B 123 SHEET 3 AB3 4 TYR B 187 SER B 196 -1 O TYR B 187 N PHE B 149 SHEET 4 AB3 4 LEU B 176 LYS B 177 -1 N LEU B 176 O SER B 188 SHEET 1 AB4 4 LYS B 163 GLU B 164 0 SHEET 2 AB4 4 GLU B 155 VAL B 160 -1 N VAL B 160 O LYS B 163 SHEET 3 AB4 4 HIS B 206 GLN B 212 -1 O ARG B 208 N TRP B 159 SHEET 4 AB4 4 ILE B 233 TRP B 239 -1 O VAL B 234 N VAL B 211 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.04 SSBOND 2 CYS A 137 CYS A 187 1555 1555 2.10 SSBOND 3 CYS A 162 CYS B 170 1555 1555 2.11 SSBOND 4 CYS B 23 CYS B 91 1555 1555 2.03 SSBOND 5 CYS B 144 CYS B 209 1555 1555 2.03 CISPEP 1 PHE B 150 PRO B 151 0 -15.32 SITE 1 AC1 3 GLY A 7 SER A 8 HIS A 9 SITE 1 AC2 3 GLU B 164 VAL B 165 HIS B 166 CRYST1 70.000 50.240 73.170 90.00 93.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014286 0.000000 0.000826 0.00000 SCALE2 0.000000 0.019904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013690 0.00000