HEADER IMMUNE SYSTEM 15-FEB-18 6FRA TITLE F11 T-CELL RECEPTOR RECOGNISING PKYVKQNTLKLAT PEPTIDE PRESENTED BY TITLE 2 HLA-DR*0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN T-CELL RECEPTOR F11 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN T-CELL RECEPTOR F11 BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T CELL RECEPTOR, HUMAN LEUKOCYTE ANTIGEN, INFLUENZA EPITOPE, KEYWDS 2 HAEMAGGLUTININ, 3D STRUCTURE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 3 17-JAN-24 6FRA 1 REMARK REVDAT 2 09-MAY-18 6FRA 1 COMPND JRNL HETNAM REVDAT 1 18-APR-18 6FRA 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2690 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3664 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3338 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4974 ; 2.038 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7695 ; 0.955 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 7.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;38.452 ;24.335 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;16.399 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4152 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 862 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9341 5.3475 -21.8653 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0279 REMARK 3 T33: 0.1351 T12: 0.0335 REMARK 3 T13: -0.0205 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.4277 L22: 1.0726 REMARK 3 L33: 1.3461 L12: 0.1570 REMARK 3 L13: -0.9467 L23: 0.3049 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 0.0878 S13: -0.0591 REMARK 3 S21: 0.0066 S22: -0.0238 S23: 0.0982 REMARK 3 S31: -0.1111 S32: -0.1474 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0401 11.5736 -15.3847 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0413 REMARK 3 T33: 0.1781 T12: -0.0035 REMARK 3 T13: 0.0084 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.0699 L22: 4.2191 REMARK 3 L33: 4.3840 L12: -1.6204 REMARK 3 L13: -0.4105 L23: 1.0392 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: -0.2846 S13: 0.0091 REMARK 3 S21: 0.2357 S22: 0.2255 S23: -0.1773 REMARK 3 S31: -0.2063 S32: 0.2366 S33: -0.0684 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -30.1359 16.0594 -0.7856 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.0365 REMARK 3 T33: 0.1512 T12: 0.0246 REMARK 3 T13: 0.0220 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.7735 L22: 0.7686 REMARK 3 L33: 1.7383 L12: -0.1982 REMARK 3 L13: 1.7658 L23: -0.1707 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.0074 S13: 0.0194 REMARK 3 S21: 0.0793 S22: -0.0525 S23: 0.0943 REMARK 3 S31: -0.0948 S32: -0.0707 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2538 24.2544 -7.4198 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.0047 REMARK 3 T33: 0.1534 T12: 0.0031 REMARK 3 T13: -0.0287 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.5817 L22: 2.0759 REMARK 3 L33: 6.6385 L12: -0.5109 REMARK 3 L13: -2.2946 L23: 1.7574 REMARK 3 S TENSOR REMARK 3 S11: 0.1890 S12: 0.0259 S13: 0.0128 REMARK 3 S21: -0.4027 S22: -0.0526 S23: -0.0334 REMARK 3 S31: -0.6940 S32: -0.0002 S33: -0.1364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, UCSD-SYSTEM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 47.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EH6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8K, 0.1M MES, 0.2M NA ACETATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1 EDO A 302 O HOH A 406 2.17 REMARK 500 OG SER B 23 O4 SO4 B 305 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 EDO A 307 O2 EDO A 307 2555 1.30 REMARK 500 C2 EDO A 307 O2 EDO A 307 2555 2.15 REMARK 500 C2 EDO A 307 C2 EDO A 307 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 CYS A 160 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 MET A 164 CG - SD - CE ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP B 2 N - CA - C ANGL. DEV. = -22.8 DEGREES REMARK 500 ARG B 106 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 149 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 222 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 -116.86 -114.04 REMARK 500 PHE A 74 63.37 -151.91 REMARK 500 ASP A 97 19.46 56.35 REMARK 500 LYS A 128 -123.61 -113.86 REMARK 500 SER A 129 170.07 80.18 REMARK 500 SER A 130 69.51 -155.73 REMARK 500 ASP A 139 17.34 80.11 REMARK 500 ILE B 45 -60.70 -92.10 REMARK 500 ASP B 94 -163.65 -79.04 REMARK 500 HIS B 150 70.40 -161.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 1 ASP B 2 121.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 DBREF 6FRA A 1 202 PDB 6FRA 6FRA 1 202 DBREF 6FRA B 1 240 PDB 6FRA 6FRA 1 240 SEQRES 1 A 201 ALA GLN SER VAL THR GLN LEU GLY SER HIS VAL SER VAL SEQRES 2 A 201 SER GLU GLY ALA LEU VAL LEU LEU ARG CYS ASN TYR SER SEQRES 3 A 201 SER SER VAL PRO PRO TYR LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 201 PRO ASN GLN GLY LEU GLN LEU LEU LEU LYS TYR THR SER SEQRES 5 A 201 ALA ALA THR LEU VAL LYS GLY ILE ASN GLY PHE GLU ALA SEQRES 6 A 201 GLU PHE LYS LYS SER GLU THR SER PHE HIS LEU THR LYS SEQRES 7 A 201 PRO SER ALA HIS MET SER ASP ALA ALA GLU TYR PHE CYS SEQRES 8 A 201 ALA VAL SER GLU GLN ASP ASP LYS ILE PHE GLY LYS GLY SEQRES 9 A 201 THR ARG LEU HIS ILE LEU PRO ASN ILE GLN ASN PRO ASP SEQRES 10 A 201 PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP SEQRES 11 A 201 LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR SEQRES 12 A 201 ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR SEQRES 13 A 201 ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SEQRES 14 A 201 SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE SEQRES 15 A 201 ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU SEQRES 16 A 201 ASP THR PHE PHE PRO SER SEQRES 1 B 240 ALA ASP VAL THR GLN THR PRO ARG ASN ARG ILE THR LYS SEQRES 2 B 240 THR GLY LYS ARG ILE MET LEU GLU CYS SER GLN THR LYS SEQRES 3 B 240 GLY HIS ASP ARG MET TYR TRP TYR ARG GLN ASP PRO GLY SEQRES 4 B 240 LEU GLY LEU ARG LEU ILE TYR TYR SER PHE ASP VAL LYS SEQRES 5 B 240 ASP ILE ASN LYS GLY GLU ILE SER ASP GLY TYR SER VAL SEQRES 6 B 240 SER ARG GLN ALA GLN ALA LYS PHE SER LEU SER LEU GLU SEQRES 7 B 240 SER ALA ILE PRO ASN GLN THR ALA LEU TYR PHE CYS ALA SEQRES 8 B 240 THR SER ASP GLU SER TYR GLY TYR THR PHE GLY SER GLY SEQRES 9 B 240 THR ARG LEU THR VAL VAL GLU ASP LEU ASN LYS VAL SER SEQRES 10 B 240 PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU SEQRES 11 B 240 ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA SEQRES 12 B 240 THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP SEQRES 13 B 240 VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP SEQRES 14 B 240 PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER SEQRES 15 B 240 ARG TYR SER LEU SER SER ARG LEU ARG VAL SER ALA THR SEQRES 16 B 240 PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL SEQRES 17 B 240 GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN SEQRES 18 B 240 ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU SEQRES 19 B 240 ALA TRP GLY ARG ALA ASP HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET SO4 A 308 5 HET SO4 A 309 5 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 10(C2 H6 O2) FORMUL 10 SO4 5(O4 S 2-) FORMUL 18 HOH *132(H2 O) HELIX 1 AA1 ILE A 60 GLY A 62 5 3 HELIX 2 AA2 LYS A 69 THR A 72 5 4 HELIX 3 AA3 HIS A 82 ALA A 86 5 5 HELIX 4 AA4 ARG A 165 ASP A 168 5 4 HELIX 5 AA5 ALA A 184 PHE A 189 1 6 HELIX 6 AA6 ILE B 81 THR B 85 5 5 HELIX 7 AA7 ASP B 112 VAL B 116 5 5 HELIX 8 AA8 SER B 127 GLN B 135 1 9 HELIX 9 AA9 ALA B 194 GLN B 198 1 5 SHEET 1 AA1 2 SER A 3 THR A 5 0 SHEET 2 AA1 2 ASN A 24 SER A 26 -1 O ASN A 24 N THR A 5 SHEET 1 AA2 5 HIS A 10 SER A 14 0 SHEET 2 AA2 5 THR A 106 LEU A 111 1 O LEU A 111 N VAL A 13 SHEET 3 AA2 5 ALA A 87 GLU A 95 -1 N TYR A 89 O THR A 106 SHEET 4 AA2 5 LEU A 33 GLN A 38 -1 N GLN A 38 O GLU A 88 SHEET 5 AA2 5 GLN A 45 TYR A 50 -1 O LEU A 47 N TRP A 35 SHEET 1 AA3 4 HIS A 10 SER A 14 0 SHEET 2 AA3 4 THR A 106 LEU A 111 1 O LEU A 111 N VAL A 13 SHEET 3 AA3 4 ALA A 87 GLU A 95 -1 N TYR A 89 O THR A 106 SHEET 4 AA3 4 LYS A 99 LYS A 99 -1 O LYS A 99 N GLU A 95 SHEET 1 AA4 4 VAL A 19 LEU A 21 0 SHEET 2 AA4 4 SER A 73 LYS A 78 -1 O LEU A 76 N LEU A 21 SHEET 3 AA4 4 GLU A 64 LYS A 68 -1 N GLU A 64 O THR A 77 SHEET 4 AA4 4 LEU A 56 LYS A 58 -1 N VAL A 57 O ALA A 65 SHEET 1 AA5 8 TYR A 155 ILE A 156 0 SHEET 2 AA5 8 PHE A 169 TRP A 177 -1 O TRP A 177 N TYR A 155 SHEET 3 AA5 8 SER A 133 THR A 138 -1 N PHE A 137 O ALA A 174 SHEET 4 AA5 8 ALA A 120 ASP A 126 -1 N TYR A 122 O LEU A 136 SHEET 5 AA5 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 125 SHEET 6 AA5 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 AA5 8 TYR B 184 SER B 193 -1 O LEU B 190 N LEU B 139 SHEET 8 AA5 8 VAL B 166 THR B 168 -1 N CYS B 167 O ARG B 189 SHEET 1 AA6 8 CYS A 160 MET A 164 0 SHEET 2 AA6 8 PHE A 169 TRP A 177 -1 O PHE A 169 N MET A 164 SHEET 3 AA6 8 SER A 133 THR A 138 -1 N PHE A 137 O ALA A 174 SHEET 4 AA6 8 ALA A 120 ASP A 126 -1 N TYR A 122 O LEU A 136 SHEET 5 AA6 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 125 SHEET 6 AA6 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 AA6 8 TYR B 184 SER B 193 -1 O LEU B 190 N LEU B 139 SHEET 8 AA6 8 LEU B 173 LYS B 174 -1 N LEU B 173 O SER B 185 SHEET 1 AA7 4 THR B 4 THR B 6 0 SHEET 2 AA7 4 ILE B 18 SER B 23 -1 O GLU B 21 N THR B 6 SHEET 3 AA7 4 LYS B 72 LEU B 77 -1 O LEU B 75 N LEU B 20 SHEET 4 AA7 4 TYR B 63 ALA B 69 -1 N SER B 64 O SER B 76 SHEET 1 AA8 6 ASN B 9 LYS B 13 0 SHEET 2 AA8 6 THR B 105 VAL B 110 1 O VAL B 110 N THR B 12 SHEET 3 AA8 6 ALA B 86 SER B 93 -1 N TYR B 88 O THR B 105 SHEET 4 AA8 6 ARG B 30 ASP B 37 -1 N GLN B 36 O LEU B 87 SHEET 5 AA8 6 GLY B 41 ASP B 50 -1 O ARG B 43 N ARG B 35 SHEET 6 AA8 6 ASP B 53 LYS B 56 -1 O ASN B 55 N TYR B 47 SHEET 1 AA9 4 ASN B 9 LYS B 13 0 SHEET 2 AA9 4 THR B 105 VAL B 110 1 O VAL B 110 N THR B 12 SHEET 3 AA9 4 ALA B 86 SER B 93 -1 N TYR B 88 O THR B 105 SHEET 4 AA9 4 TYR B 99 PHE B 101 -1 O THR B 100 N THR B 92 SHEET 1 AB1 4 GLU B 161 VAL B 162 0 SHEET 2 AB1 4 VAL B 151 TRP B 156 -1 N TRP B 155 O VAL B 162 SHEET 3 AB1 4 HIS B 203 PHE B 210 -1 O GLN B 207 N SER B 154 SHEET 4 AB1 4 GLN B 229 TRP B 236 -1 O ALA B 235 N PHE B 204 SSBOND 1 CYS A 23 CYS A 91 1555 1555 2.01 SSBOND 2 CYS A 135 CYS A 185 1555 1555 2.06 SSBOND 3 CYS A 160 CYS B 167 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 90 1555 1555 2.16 SSBOND 5 CYS B 141 CYS B 206 1555 1555 2.01 CISPEP 1 SER A 130 ASP A 131 0 -10.58 CISPEP 2 THR B 6 PRO B 7 0 -8.73 CISPEP 3 TYR B 147 PRO B 148 0 1.88 SITE 1 AC1 7 HIS A 82 EDO A 302 HOH A 406 LYS B 13 SITE 2 AC1 7 ASP B 112 ASN B 114 HOH B 442 SITE 1 AC2 6 MET A 83 SER A 84 ASP A 163 ARG A 165 SITE 2 AC2 6 EDO A 301 HOH A 406 SITE 1 AC3 2 SER A 84 ASP A 85 SITE 1 AC4 4 GLY A 43 LEU A 44 GLY B 102 SER B 103 SITE 1 AC5 6 SER A 14 LEU A 111 PRO A 112 ASN A 113 SITE 2 AC5 6 GLN A 143 HOH A 401 SITE 1 AC6 5 PHE A 34 ALA A 92 LYS A 99 ILE A 101 SITE 2 AC6 5 TYR B 99 SITE 1 AC7 5 SER A 142 GLN A 143 THR A 144 ASN A 145 SITE 2 AC7 5 LYS A 159 SITE 1 AC8 3 LYS A 68 LYS A 69 SER A 70 SITE 1 AC9 3 PHE A 199 PRO A 201 SER A 202 SITE 1 AD1 8 SER A 28 ASP A 97 ASP A 98 SER B 93 SITE 2 AD1 8 ASP B 94 GLU B 95 SER B 96 TYR B 97 SITE 1 AD2 5 ARG B 35 ASP B 61 TYR B 63 ASN B 83 SITE 2 AD2 5 GLN B 84 SITE 1 AD3 3 VAL B 162 HIS B 163 SER B 164 SITE 1 AD4 5 LEU A 48 LYS A 49 VAL A 57 LYS A 58 SITE 2 AD4 5 ARG B 201 SITE 1 AD5 6 THR B 4 GLN B 5 THR B 6 GLU B 21 SITE 2 AD5 6 CYS B 22 SER B 23 SITE 1 AD6 5 THR B 85 ALA B 86 ARG B 106 LEU B 107 SITE 2 AD6 5 THR B 108 CRYST1 85.710 114.630 50.660 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011667 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019739 0.00000