HEADER HYDROLASE 19-FEB-18 6FS3 TITLE PHOSPHOTRIESTERASE PTE_A53_1 CAVEAT 6FS3 9ON A 404 HAS WRONG CHIRALITY AT ATOM C4 9ON B 404 HAS WRONG CAVEAT 2 6FS3 CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHION HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOTRIESTERASE,PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_COMMON: BREVUNDIMONAS DIMINUTA; SOURCE 4 ORGANISM_TAXID: 293; SOURCE 5 GENE: OPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOENZYME, TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM,N.AGGARWAL,S.ALBECK,T.UNGER,S.HAMER ROGOTNER,I.SILMAN,H.LEADER, AUTHOR 2 Y.ASHANI,M.GOLDSMITH,P.GREISEN,D.TAWFIK,L.J.SUSSMAN REVDAT 2 17-JAN-24 6FS3 1 LINK REVDAT 1 20-MAR-19 6FS3 0 JRNL AUTH O.DYM,N.AGGARWAL,J.L.SUSSMAN,I.SILMAN JRNL TITL CRYSTAL STRUCTURES OF BACTERAIL PHOSPHOTRIESTERASE VARIANT JRNL TITL 2 WITH HIGH CATALYTIC ACTIVITY TOWARDS ORGANOPHOSPHATE NERVE JRNL TITL 3 AGENTS DEVELOPED BY USE OF STRUCTURE-BASED DESIGN AND JRNL TITL 4 MOLECULAR EVOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4779 - 4.8894 1.00 2734 154 0.1431 0.1555 REMARK 3 2 4.8894 - 3.8866 1.00 2693 143 0.1278 0.1540 REMARK 3 3 3.8866 - 3.3970 1.00 2712 137 0.1493 0.1733 REMARK 3 4 3.3970 - 3.0871 1.00 2705 124 0.1749 0.1967 REMARK 3 5 3.0871 - 2.8663 1.00 2674 143 0.1757 0.2067 REMARK 3 6 2.8663 - 2.6975 1.00 2708 132 0.1729 0.1983 REMARK 3 7 2.6975 - 2.5626 1.00 2690 119 0.1667 0.1975 REMARK 3 8 2.5626 - 2.4512 1.00 2664 139 0.1671 0.2127 REMARK 3 9 2.4512 - 2.3569 1.00 2685 131 0.1620 0.1896 REMARK 3 10 2.3569 - 2.2757 1.00 2680 142 0.1612 0.2305 REMARK 3 11 2.2757 - 2.2046 1.00 2658 155 0.1569 0.2128 REMARK 3 12 2.2046 - 2.1416 1.00 2670 143 0.1633 0.2176 REMARK 3 13 2.1416 - 2.0852 1.00 2669 142 0.1681 0.1968 REMARK 3 14 2.0852 - 2.0344 1.00 2655 144 0.1714 0.2193 REMARK 3 15 2.0344 - 1.9882 1.00 2682 150 0.1771 0.1975 REMARK 3 16 1.9882 - 1.9459 1.00 2624 142 0.1780 0.2138 REMARK 3 17 1.9459 - 1.9070 0.99 2671 134 0.1889 0.2370 REMARK 3 18 1.9070 - 1.8710 0.99 2651 144 0.2012 0.3005 REMARK 3 19 1.8710 - 1.8376 0.99 2680 134 0.2182 0.2755 REMARK 3 20 1.8376 - 1.8065 0.99 2616 133 0.2296 0.2889 REMARK 3 21 1.8065 - 1.7773 0.99 2651 129 0.2451 0.2904 REMARK 3 22 1.7773 - 1.7500 0.99 2627 135 0.2713 0.2859 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5138 REMARK 3 ANGLE : 0.874 6986 REMARK 3 CHIRALITY : 0.052 814 REMARK 3 PLANARITY : 0.005 913 REMARK 3 DIHEDRAL : 5.615 4170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 23.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04998 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31240 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M HEPES PH=7.5 11% POLYACRYLIC REMARK 280 ACID 5100 NA SALT 0.01M MGCL2, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 27 REMARK 465 SER A 28 REMARK 465 GLU A 29 REMARK 465 PHE A 30 REMARK 465 THR A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 LEU A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 ILE B 27 REMARK 465 SER B 28 REMARK 465 GLU B 29 REMARK 465 PHE B 30 REMARK 465 THR B 31 REMARK 465 ASN B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 LYS A 294 NZ REMARK 470 ARG A 337 CD NE CZ NH1 NH2 REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 85 CZ NH1 NH2 REMARK 470 GLN B 173 CD OE1 NE2 REMARK 470 ARG B 363 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 169 C FMT B 401 1.89 REMARK 500 NZ LYS A 169 C FMT A 401 1.91 REMARK 500 NH1 ARG B 89 O HOH B 501 2.03 REMARK 500 O HOH B 618 O HOH B 674 2.07 REMARK 500 O HOH B 674 O HOH B 699 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -143.82 -138.01 REMARK 500 THR A 128 -167.85 -110.53 REMARK 500 TRP A 131 -146.75 -105.23 REMARK 500 GLU A 159 -134.48 51.79 REMARK 500 TYR A 309 -156.81 -135.31 REMARK 500 SER B 61 -146.96 -140.58 REMARK 500 TRP B 69 58.76 -143.69 REMARK 500 THR B 128 -168.42 -107.37 REMARK 500 TRP B 131 -146.14 -99.45 REMARK 500 GLU B 159 -129.93 53.83 REMARK 500 TYR B 309 -156.81 -139.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 202 PHE A 203 149.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 124.5 REMARK 620 3 ASP A 301 OD1 89.0 92.1 REMARK 620 4 FMT A 401 O1 90.5 87.3 178.9 REMARK 620 5 9ON A 404 O9 110.5 123.7 100.2 80.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 ND1 REMARK 620 2 HIS A 230 NE2 99.6 REMARK 620 3 FMT A 401 O2 104.5 116.2 REMARK 620 4 9ON A 404 O8 97.8 128.7 105.3 REMARK 620 5 9ON A 404 O9 153.7 92.6 90.6 57.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 57 NE2 122.1 REMARK 620 3 ASP B 301 OD1 90.2 92.9 REMARK 620 4 FMT B 401 O1 88.7 88.4 178.6 REMARK 620 5 9ON B 404 O8 109.4 127.4 97.1 82.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 201 ND1 REMARK 620 2 HIS B 230 NE2 102.0 REMARK 620 3 FMT B 401 O2 106.7 114.0 REMARK 620 4 9ON B 404 O9 98.8 120.8 111.7 REMARK 620 5 9ON B 404 O8 152.8 83.8 94.6 56.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9ON A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9ON B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FEE RELATED DB: PDB REMARK 900 RELATED ID: 6FEF RELATED DB: PDB REMARK 900 RELATED ID: 6FEI RELATED DB: PDB REMARK 900 RELATED ID: 6FEV RELATED DB: PDB REMARK 900 RELATED ID: 6FFW RELATED DB: PDB REMARK 900 RELATED ID: 6FOR RELATED DB: PDB REMARK 900 RELATED ID: 6FRZ RELATED DB: PDB REMARK 900 RELATED ID: 6FQE RELATED DB: PDB DBREF 6FS3 A 32 365 UNP P0A434 OPD_BREDI 32 365 DBREF 6FS3 B 32 365 UNP P0A434 OPD_BREDI 32 365 SEQADV 6FS3 ILE A 27 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 SER A 28 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 GLU A 29 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 PHE A 30 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 THR A 31 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 ASN A 32 UNP P0A434 GLY 32 CONFLICT SEQADV 6FS3 SER A 33 UNP P0A434 THR 33 CONFLICT SEQADV 6FS3 ALA A 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FS3 VAL A 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FS3 ALA A 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FS3 GLU A 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FS3 GLN A 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FS3 ARG A 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FS3 PHE A 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FS3 GLY A 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FS3 ASN A 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FS3 SER A 319 UNP P0A434 ARG 319 CONFLICT SEQADV 6FS3 ILE B 27 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 SER B 28 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 GLU B 29 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 PHE B 30 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 THR B 31 UNP P0A434 EXPRESSION TAG SEQADV 6FS3 ASN B 32 UNP P0A434 GLY 32 CONFLICT SEQADV 6FS3 SER B 33 UNP P0A434 THR 33 CONFLICT SEQADV 6FS3 ALA B 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FS3 VAL B 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FS3 ALA B 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FS3 GLU B 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FS3 GLN B 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FS3 ARG B 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FS3 PHE B 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FS3 GLY B 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FS3 ASN B 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FS3 SER B 319 UNP P0A434 ARG 319 CONFLICT SEQRES 1 A 339 ILE SER GLU PHE THR ASN SER GLY ASP ARG ILE ASN THR SEQRES 2 A 339 VAL ARG GLY PRO ILE THR ILE SER GLU ALA GLY PHE THR SEQRES 3 A 339 LEU THR HIS GLU HIS ILE CYS GLY SER SER ALA GLY PHE SEQRES 4 A 339 LEU ARG ALA TRP PRO GLU PHE PHE GLY SER ARG ALA ALA SEQRES 5 A 339 LEU VAL GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG SEQRES 6 A 339 ALA ALA GLY VAL ARG THR ILE VAL ASP VAL SER THR PHE SEQRES 7 A 339 ASP ALA GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SER SEQRES 8 A 339 ARG ALA ALA ASP VAL HIS ILE VAL ALA ALA THR GLY LEU SEQRES 9 A 339 TRP GLU ASP PRO PRO LEU SER MET ARG LEU ARG SER VAL SEQRES 10 A 339 GLU GLU LEU THR GLN PHE PHE LEU ARG GLU ILE GLN TYR SEQRES 11 A 339 GLY ILE GLU ASP THR GLY ILE ARG ALA GLY ILE ILE LYS SEQRES 12 A 339 VAL ALA THR GLN GLY LYS ALA THR PRO PHE GLN GLU LEU SEQRES 13 A 339 VAL LEU ARG ALA ALA ALA ARG ALA SER LEU ALA THR GLY SEQRES 14 A 339 VAL PRO VAL THR THR HIS THR PHE ALA SER GLN ARG ASP SEQRES 15 A 339 GLY GLU GLN GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SEQRES 16 A 339 SER PRO SER ARG VAL CYS ILE GLY HIS SER ASP ASP THR SEQRES 17 A 339 ASP ASP LEU SER TYR LEU THR ALA LEU ALA ALA ARG GLY SEQRES 18 A 339 TYR LEU ILE GLY LEU ASP GLY ILE PRO HIS SER ALA ILE SEQRES 19 A 339 GLY LEU GLU ASP ASN ALA SER ALA SER ALA LEU LEU GLY SEQRES 20 A 339 ASN ARG SER TRP GLN THR ARG ALA LEU LEU ILE LYS ALA SEQRES 21 A 339 LEU ILE ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SER SEQRES 22 A 339 ASN ASP TRP LEU PHE GLY PHE SER SER TYR VAL THR ASN SEQRES 23 A 339 ILE MET ASP VAL MET ASP SER VAL ASN PRO ASP GLY MET SEQRES 24 A 339 ALA PHE ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU SEQRES 25 A 339 LYS GLY VAL PRO GLN GLU THR LEU ALA GLY ILE THR VAL SEQRES 26 A 339 THR ASN PRO ALA ARG PHE LEU SER PRO THR LEU ARG ALA SEQRES 27 A 339 SER SEQRES 1 B 339 ILE SER GLU PHE THR ASN SER GLY ASP ARG ILE ASN THR SEQRES 2 B 339 VAL ARG GLY PRO ILE THR ILE SER GLU ALA GLY PHE THR SEQRES 3 B 339 LEU THR HIS GLU HIS ILE CYS GLY SER SER ALA GLY PHE SEQRES 4 B 339 LEU ARG ALA TRP PRO GLU PHE PHE GLY SER ARG ALA ALA SEQRES 5 B 339 LEU VAL GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG SEQRES 6 B 339 ALA ALA GLY VAL ARG THR ILE VAL ASP VAL SER THR PHE SEQRES 7 B 339 ASP ALA GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SER SEQRES 8 B 339 ARG ALA ALA ASP VAL HIS ILE VAL ALA ALA THR GLY LEU SEQRES 9 B 339 TRP GLU ASP PRO PRO LEU SER MET ARG LEU ARG SER VAL SEQRES 10 B 339 GLU GLU LEU THR GLN PHE PHE LEU ARG GLU ILE GLN TYR SEQRES 11 B 339 GLY ILE GLU ASP THR GLY ILE ARG ALA GLY ILE ILE LYS SEQRES 12 B 339 VAL ALA THR GLN GLY LYS ALA THR PRO PHE GLN GLU LEU SEQRES 13 B 339 VAL LEU ARG ALA ALA ALA ARG ALA SER LEU ALA THR GLY SEQRES 14 B 339 VAL PRO VAL THR THR HIS THR PHE ALA SER GLN ARG ASP SEQRES 15 B 339 GLY GLU GLN GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SEQRES 16 B 339 SER PRO SER ARG VAL CYS ILE GLY HIS SER ASP ASP THR SEQRES 17 B 339 ASP ASP LEU SER TYR LEU THR ALA LEU ALA ALA ARG GLY SEQRES 18 B 339 TYR LEU ILE GLY LEU ASP GLY ILE PRO HIS SER ALA ILE SEQRES 19 B 339 GLY LEU GLU ASP ASN ALA SER ALA SER ALA LEU LEU GLY SEQRES 20 B 339 ASN ARG SER TRP GLN THR ARG ALA LEU LEU ILE LYS ALA SEQRES 21 B 339 LEU ILE ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SER SEQRES 22 B 339 ASN ASP TRP LEU PHE GLY PHE SER SER TYR VAL THR ASN SEQRES 23 B 339 ILE MET ASP VAL MET ASP SER VAL ASN PRO ASP GLY MET SEQRES 24 B 339 ALA PHE ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU SEQRES 25 B 339 LYS GLY VAL PRO GLN GLU THR LEU ALA GLY ILE THR VAL SEQRES 26 B 339 THR ASN PRO ALA ARG PHE LEU SER PRO THR LEU ARG ALA SEQRES 27 B 339 SER HET FMT A 401 3 HET ZN A 402 1 HET ZN A 403 1 HET 9ON A 404 10 HET FMT B 401 3 HET ZN B 402 1 HET ZN B 403 1 HET 9ON B 404 10 HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETNAM 9ON (2~{S})-2-METHYLPENTANEDIOIC ACID FORMUL 3 FMT 2(C H2 O2) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 9ON 2(C6 H10 O4) FORMUL 11 HOH *471(H2 O) HELIX 1 AA1 ILE A 46 GLY A 50 1 5 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 PHE A 203 GLN A 206 5 4 HELIX 11 AB2 ARG A 207 GLU A 219 1 13 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 ASN A 265 GLY A 273 1 9 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 ARG A 331 1 6 HELIX 21 AC3 ARG A 331 LYS A 339 1 9 HELIX 22 AC4 PRO A 342 VAL A 351 1 10 HELIX 23 AC5 VAL A 351 SER A 359 1 9 HELIX 24 AC6 ILE B 46 GLY B 50 1 5 HELIX 25 AC7 GLY B 64 TRP B 69 1 6 HELIX 26 AC8 PRO B 70 GLY B 74 5 5 HELIX 27 AC9 SER B 75 ALA B 93 1 19 HELIX 28 AD1 THR B 103 GLY B 107 5 5 HELIX 29 AD2 ASP B 109 ASP B 121 1 13 HELIX 30 AD3 PRO B 135 LEU B 140 1 6 HELIX 31 AD4 SER B 142 TYR B 156 1 15 HELIX 32 AD5 THR B 177 GLY B 195 1 19 HELIX 33 AD6 PHE B 203 GLN B 206 5 4 HELIX 34 AD7 ARG B 207 GLU B 219 1 13 HELIX 35 AD8 SER B 222 SER B 224 5 3 HELIX 36 AD9 HIS B 230 THR B 234 5 5 HELIX 37 AE1 ASP B 236 ARG B 246 1 11 HELIX 38 AE2 ASN B 265 GLY B 273 1 9 HELIX 39 AE3 SER B 276 GLN B 290 1 15 HELIX 40 AE4 TYR B 292 LYS B 294 5 3 HELIX 41 AE5 ASN B 312 ASN B 321 1 10 HELIX 42 AE6 ASP B 323 MET B 325 5 3 HELIX 43 AE7 ALA B 326 LYS B 339 1 14 HELIX 44 AE8 PRO B 342 VAL B 351 1 10 HELIX 45 AE9 VAL B 351 SER B 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 GLY A 129 0 SHEET 2 AA4 6 ILE A 167 ALA A 171 1 O LYS A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O GLY A 251 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ARG B 36 THR B 39 0 SHEET 2 AA5 2 GLY B 42 THR B 45 -1 O ILE B 44 N ILE B 37 SHEET 1 AA6 3 THR B 52 GLU B 56 0 SHEET 2 AA6 3 THR B 97 ASP B 100 1 O VAL B 99 N LEU B 53 SHEET 3 AA6 3 HIS B 123 VAL B 125 1 O HIS B 123 N ILE B 98 SHEET 1 AA7 2 CYS B 59 GLY B 60 0 SHEET 2 AA7 2 GLY B 305 PHE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 AA8 6 ALA B 127 GLY B 129 0 SHEET 2 AA8 6 ILE B 167 ALA B 171 1 O LYS B 169 N THR B 128 SHEET 3 AA8 6 VAL B 198 HIS B 201 1 O THR B 199 N ILE B 168 SHEET 4 AA8 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 AA8 6 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 6 AA8 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK NE2 HIS A 55 ZN ZN A 402 1555 1555 2.08 LINK NE2 HIS A 57 ZN ZN A 402 1555 1555 2.03 LINK ND1 HIS A 201 ZN ZN A 403 1555 1555 2.06 LINK NE2 HIS A 230 ZN ZN A 403 1555 1555 2.02 LINK OD1 ASP A 301 ZN ZN A 402 1555 1555 2.16 LINK O1 FMT A 401 ZN ZN A 402 1555 1555 2.11 LINK O2 FMT A 401 ZN ZN A 403 1555 1555 1.99 LINK ZN ZN A 402 O9 9ON A 404 1555 1555 1.95 LINK ZN ZN A 403 O8 9ON A 404 1555 1555 2.02 LINK ZN ZN A 403 O9 9ON A 404 1555 1555 2.48 LINK NE2 HIS B 55 ZN ZN B 402 1555 1555 2.16 LINK NE2 HIS B 57 ZN ZN B 402 1555 1555 1.96 LINK ND1 HIS B 201 ZN ZN B 403 1555 1555 2.12 LINK NE2 HIS B 230 ZN ZN B 403 1555 1555 2.04 LINK OD1 ASP B 301 ZN ZN B 402 1555 1555 2.23 LINK O1 FMT B 401 ZN ZN B 402 1555 1555 2.15 LINK O2 FMT B 401 ZN ZN B 403 1555 1555 2.02 LINK ZN ZN B 402 O8 9ON B 404 1555 1555 1.95 LINK ZN ZN B 403 O9 9ON B 404 1555 1555 2.02 LINK ZN ZN B 403 O8 9ON B 404 1555 1555 2.54 SITE 1 AC1 10 HIS A 55 HIS A 57 VAL A 101 TRP A 131 SITE 2 AC1 10 LYS A 169 HIS A 201 HIS A 230 ZN A 402 SITE 3 AC1 10 ZN A 403 9ON A 404 SITE 1 AC2 5 HIS A 55 HIS A 57 ASP A 301 FMT A 401 SITE 2 AC2 5 9ON A 404 SITE 1 AC3 4 HIS A 201 HIS A 230 FMT A 401 9ON A 404 SITE 1 AC4 12 HIS A 55 HIS A 57 TRP A 131 HIS A 201 SITE 2 AC4 12 HIS A 230 HIS A 257 ASP A 301 LEU A 303 SITE 3 AC4 12 FMT A 401 ZN A 402 ZN A 403 HOH A 658 SITE 1 AC5 9 HIS B 55 HIS B 57 VAL B 101 LYS B 169 SITE 2 AC5 9 HIS B 201 HIS B 230 ZN B 402 ZN B 403 SITE 3 AC5 9 9ON B 404 SITE 1 AC6 5 HIS B 55 HIS B 57 ASP B 301 FMT B 401 SITE 2 AC6 5 9ON B 404 SITE 1 AC7 4 HIS B 201 HIS B 230 FMT B 401 9ON B 404 SITE 1 AC8 9 HIS B 55 HIS B 57 TRP B 131 HIS B 201 SITE 2 AC8 9 HIS B 230 ASP B 301 FMT B 401 ZN B 402 SITE 3 AC8 9 ZN B 403 CRYST1 54.469 81.460 70.710 90.00 95.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018359 0.000000 0.001645 0.00000 SCALE2 0.000000 0.012276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014199 0.00000