HEADER TRANSFERASE 20-FEB-18 6FSO TITLE CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH METHYL({[5-(PYRIDIN-3-YLOXY) TITLE 2 FURAN-2-YL]METHYL})AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS (STRAIN ATCC SOURCE 3 31821 / ZM4 / CP4); SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 6 GENE: TGT, ZMO0363; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TGT, TRNA, GUANINE EXCHANGE ENZYME, PROTEIN INTERFACE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.HASSAAN,A.HEINE,G.KLEBE REVDAT 5 17-JAN-24 6FSO 1 REMARK REVDAT 4 18-MAR-20 6FSO 1 JRNL REVDAT 3 26-JUN-19 6FSO 1 REMARK REVDAT 2 08-MAY-19 6FSO 1 REMARK ATOM REVDAT 1 20-MAR-19 6FSO 0 JRNL AUTH E.HASSAAN,P.O.ERIKSSON,S.GESCHWINDNER,A.HEINE,G.KLEBE JRNL TITL FRAGMENTS AS NOVEL STARTING POINTS FOR TRNA-GUANINE JRNL TITL 2 TRANSGLYCOSYLASE INHIBITORS FOUND BY ALTERNATIVE SCREENING JRNL TITL 3 STRATEGIES. JRNL REF CHEMMEDCHEM V. 15 324 2020 JRNL REFN ESSN 1860-7187 JRNL PMID 31808981 JRNL DOI 10.1002/CMDC.201900604 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 68178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3080 - 4.1778 0.96 2842 150 0.1649 0.1853 REMARK 3 2 4.1778 - 3.3164 0.93 2670 141 0.1514 0.1594 REMARK 3 3 3.3164 - 2.8973 0.97 2782 146 0.1505 0.1567 REMARK 3 4 2.8973 - 2.6324 0.92 2633 139 0.1457 0.1631 REMARK 3 5 2.6324 - 2.4438 0.97 2777 146 0.1353 0.1587 REMARK 3 6 2.4438 - 2.2997 0.97 2778 146 0.1290 0.1472 REMARK 3 7 2.2997 - 2.1845 0.89 2540 133 0.1593 0.2196 REMARK 3 8 2.1845 - 2.0894 0.97 2766 146 0.1387 0.1567 REMARK 3 9 2.0894 - 2.0090 0.90 2571 134 0.1694 0.1866 REMARK 3 10 2.0090 - 1.9397 0.96 2714 143 0.1500 0.1483 REMARK 3 11 1.9397 - 1.8790 0.86 2440 128 0.1900 0.2225 REMARK 3 12 1.8790 - 1.8253 0.97 2764 146 0.1523 0.1781 REMARK 3 13 1.8253 - 1.7773 0.97 2769 146 0.1449 0.1500 REMARK 3 14 1.7773 - 1.7339 0.98 2751 144 0.1502 0.1855 REMARK 3 15 1.7339 - 1.6945 0.97 2760 146 0.1711 0.2162 REMARK 3 16 1.6945 - 1.6584 0.98 2773 146 0.1700 0.1795 REMARK 3 17 1.6584 - 1.6252 0.97 2729 143 0.1761 0.2099 REMARK 3 18 1.6252 - 1.5946 0.97 2779 146 0.1782 0.1955 REMARK 3 19 1.5946 - 1.5661 0.97 2746 145 0.1907 0.2416 REMARK 3 20 1.5661 - 1.5395 0.97 2710 143 0.2197 0.2370 REMARK 3 21 1.5395 - 1.5147 0.87 2509 132 0.3086 0.3285 REMARK 3 22 1.5147 - 1.4914 0.96 2725 144 0.2896 0.2730 REMARK 3 23 1.4914 - 1.4695 0.94 2654 139 0.3100 0.3399 REMARK 3 24 1.4695 - 1.4488 0.90 2587 137 0.3439 0.4246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3010 REMARK 3 ANGLE : 0.989 4043 REMARK 3 CHIRALITY : 0.073 421 REMARK 3 PLANARITY : 0.007 547 REMARK 3 DIHEDRAL : 22.818 1143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.1395 9.7994 88.5334 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0699 REMARK 3 T33: 0.0733 T12: 0.0011 REMARK 3 T13: -0.0026 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.4312 L22: -0.0154 REMARK 3 L33: 0.2997 L12: -0.1398 REMARK 3 L13: 0.1772 L23: 0.0399 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.0189 S13: 0.0050 REMARK 3 S21: -0.0118 S22: 0.0032 S23: -0.0106 REMARK 3 S31: 0.0251 S32: -0.0389 S33: -0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.3106 32.8051 96.5121 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.1418 REMARK 3 T33: 0.2131 T12: 0.0466 REMARK 3 T13: -0.1301 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 0.0459 L22: 0.0200 REMARK 3 L33: 0.0357 L12: 0.0316 REMARK 3 L13: -0.0379 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.0800 S12: 0.0230 S13: 0.1909 REMARK 3 S21: -0.2406 S22: 0.0068 S23: 0.0416 REMARK 3 S31: -0.1424 S32: -0.1138 S33: -0.0166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.6301 19.6076 99.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.1052 REMARK 3 T33: 0.1024 T12: 0.0016 REMARK 3 T13: -0.0071 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.1058 L22: 0.0237 REMARK 3 L33: 0.1414 L12: 0.0198 REMARK 3 L13: 0.1312 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.1646 S13: 0.1346 REMARK 3 S21: 0.0505 S22: -0.0261 S23: 0.0137 REMARK 3 S31: 0.0327 S32: -0.0803 S33: 0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.2496 19.9772 102.3205 REMARK 3 T TENSOR REMARK 3 T11: 0.0958 T22: 0.0913 REMARK 3 T33: 0.0947 T12: -0.0029 REMARK 3 T13: 0.0013 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.2733 L22: 0.3647 REMARK 3 L33: 0.4426 L12: -0.0405 REMARK 3 L13: 0.2465 L23: 0.2481 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.1209 S13: 0.0396 REMARK 3 S21: -0.0084 S22: 0.0399 S23: -0.0657 REMARK 3 S31: -0.0543 S32: 0.0384 S33: 0.0186 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.6392 16.0688 87.7626 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.0674 REMARK 3 T33: 0.1090 T12: -0.0021 REMARK 3 T13: 0.0064 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.2443 L22: 0.2916 REMARK 3 L33: 0.2578 L12: -0.1162 REMARK 3 L13: -0.1247 L23: 0.2722 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.0200 S13: 0.0937 REMARK 3 S21: -0.0493 S22: 0.0507 S23: -0.0697 REMARK 3 S31: -0.0440 S32: 0.0898 S33: 0.0149 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.1568 12.1637 68.0324 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.0830 REMARK 3 T33: 0.0834 T12: -0.0017 REMARK 3 T13: 0.0026 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.0021 L22: 0.0295 REMARK 3 L33: 0.5042 L12: -0.2082 REMARK 3 L13: 0.2633 L23: -0.2744 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0655 S13: 0.0082 REMARK 3 S21: -0.0254 S22: -0.0159 S23: -0.0393 REMARK 3 S31: 0.0232 S32: 0.0547 S33: 0.0026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68288 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.449 REMARK 200 RESOLUTION RANGE LOW (A) : 43.289 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 2.680 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000, 100MM MES, 1MM DTT, 10% REMARK 280 DMSO, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.35650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.35650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 166.88108 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 140.40387 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 10 REMARK 465 LEU A 111 REMARK 465 SER A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 THR A 115 REMARK 465 ARG A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 47 OG1 CG2 REMARK 470 TYR A 106 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 109 CG SD CE REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LEU A 128 O REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLU A 208 OE1 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ASN A 301 ND2 REMARK 470 ARG A 306 CZ NH1 NH2 REMARK 470 LYS A 325 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 512 O HOH A 684 1.97 REMARK 500 O HOH A 712 O HOH A 715 2.02 REMARK 500 O THR A 47 O HOH A 501 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 687 O HOH A 705 4758 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 119.64 -162.89 REMARK 500 THR A 47 -110.59 15.93 REMARK 500 THR A 47 -74.05 -70.52 REMARK 500 ALA A 48 63.99 -114.01 REMARK 500 ASP A 129 9.77 -155.89 REMARK 500 GLN A 203 -169.39 -122.55 REMARK 500 SER A 205 -132.06 53.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.5 REMARK 620 3 CYS A 323 SG 115.1 114.0 REMARK 620 4 HIS A 349 ND1 105.5 115.6 100.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F63 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 409 DBREF 6FSO A 10 384 UNP P28720 TGT_ZYMMO 10 384 SEQADV 6FSO LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 375 ASP ARG PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU SEQRES 2 A 375 GLY LYS ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY SEQRES 3 A 375 VAL ILE ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA SEQRES 4 A 375 ALA THR VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA SEQRES 5 A 375 THR GLY ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU SEQRES 6 A 375 MET LEU ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY SEQRES 7 A 375 GLY LEU HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU SEQRES 8 A 375 THR ASP SER GLY GLY TYR GLN VAL MET SER LEU SER SER SEQRES 9 A 375 LEU THR LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER SEQRES 10 A 375 HIS LEU ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SEQRES 11 A 375 SER ILE GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL SEQRES 12 A 375 MET ALA PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SEQRES 13 A 375 SER ARG ALA ALA SER SER MET GLU ARG SER MET ARG TRP SEQRES 14 A 375 ALA LYS ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU SEQRES 15 A 375 GLN ALA GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SEQRES 16 A 375 SER VAL PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA SEQRES 17 A 375 LEU ALA GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY SEQRES 18 A 375 LEU ALA VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL SEQRES 19 A 375 LEU ASP PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO SEQRES 20 A 375 HIS TYR LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL SEQRES 21 A 375 GLY ALA VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL SEQRES 22 A 375 LEU PRO THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR SEQRES 23 A 375 TRP ASP GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER SEQRES 24 A 375 GLU ASP LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA SEQRES 25 A 375 VAL CYS GLN LYS TRP SER ARG ALA TYR ILE HIS HIS LEU SEQRES 26 A 375 ILE ARG ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR SEQRES 27 A 375 GLU HIS ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS SEQRES 28 A 375 ILE ARG ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE SEQRES 29 A 375 ALA GLN ASP PHE ARG ALA ARG TYR PHE ALA ARG HET ZN A 401 1 HET PEG A 402 7 HET PEG A 403 7 HET PEG A 404 7 HET DMS A 405 4 HET F63 A 406 15 HET PG4 A 407 13 HET ACT A 408 4 HET PGE A 409 10 HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM DMS DIMETHYL SULFOXIDE HETNAM F63 N-METHYL-1-[5-(PYRIDIN-3-YLOXY)FURAN-2-YL]METHANAMINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 PEG 3(C4 H10 O3) FORMUL 6 DMS C2 H6 O S FORMUL 7 F63 C11 H12 N2 O2 FORMUL 8 PG4 C8 H18 O5 FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 PGE C6 H14 O4 FORMUL 11 HOH *252(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 ASN A 70 ARG A 77 1 8 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 SER A 110 1 7 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 SER A 188 1 25 HELIX 8 AA8 ARG A 189 ALA A 196 1 8 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLY A 236 VAL A 248 1 13 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 GLU A 273 1 10 HELIX 13 AB4 VAL A 282 ASN A 290 1 9 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 SER A 15 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 MET A 43 0 SHEET 2 AA2 8 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 3 GLN A 117 SER A 118 0 SHEET 2 AA3 3 GLY A 121 LYS A 125 -1 O GLY A 121 N SER A 118 SHEET 3 AA3 3 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.29 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.08 CISPEP 1 THR A 39 PRO A 40 0 0.93 CISPEP 2 ARG A 77 PRO A 78 0 6.96 CISPEP 3 TYR A 161 PRO A 162 0 0.33 CISPEP 4 VAL A 262 GLY A 263 0 0.26 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 6 ARG A 34 GLY A 148 SER A 149 ASP A 150 SITE 2 AC2 6 ASN A 195 HOH A 611 SITE 1 AC3 6 ARG A 77 ARG A 303 ARG A 336 GLY A 368 SITE 2 AC3 6 HOH A 567 HOH A 580 SITE 1 AC4 6 PRO A 249 LEU A 251 PRO A 252 ASP A 253 SITE 2 AC4 6 ASP A 254 HOH A 664 SITE 1 AC5 4 GLY A 94 TRP A 95 ASP A 96 HOH A 741 SITE 1 AC6 3 GLU A 173 ARG A 177 GLN A 213 SITE 1 AC7 4 TRP A 296 GLU A 317 GLN A 356 LYS A 360 SITE 1 AC8 5 VAL A 282 THR A 285 ARG A 286 ARG A 289 SITE 2 AC8 5 HOH A 540 SITE 1 AC9 6 LEU A 311 PRO A 313 LYS A 325 TRP A 326 SITE 2 AC9 6 SER A 327 HOH A 546 CRYST1 90.460 64.713 70.552 90.00 95.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011055 0.000000 0.001105 0.00000 SCALE2 0.000000 0.015453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014245 0.00000