HEADER TRANSFERASE 20-FEB-18 6FTB TITLE STAPHYLOCOCCUS AUREUS MONOFUNCTIONAL GLYCOSYLTRANSFERASE IN COMPLEX TITLE 2 WITH MOENOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOFUNCTIONAL GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MGT,PEPTIDOGLYCAN TGASE; COMPND 5 EC: 2.4.1.129; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS MW2; SOURCE 3 ORGANISM_TAXID: 1242971; SOURCE 4 GENE: MGT, MW1814; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: TOLC-; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPW2-SA0933(2)-N3 KEYWDS TRANSGLYCOSYLASE, PEPTIDOGLYCAN, MONOFUNCTIONAL, MOENOMYCIN, KEYWDS 2 INHIBITOR, MEMBRANE, CELL SHAPE, CELL WALL BIOSYNTHESIS, KEYWDS 3 GLYCOSYLTRANSFERASE, PEPTIDOGLYCAN SYNTHESIS, TRANSFERASE, KEYWDS 4 ANTIBIOTICS EXPDTA X-RAY DIFFRACTION AUTHOR A.S.PUNEKAR,C.J.DOWSON,D.I.ROPER REVDAT 3 17-JAN-24 6FTB 1 REMARK REVDAT 2 08-AUG-18 6FTB 1 JRNL REVDAT 1 27-JUN-18 6FTB 0 JRNL AUTH A.S.PUNEKAR,F.SAMSUDIN,A.J.LLOYD,C.G.DOWSON,D.J.SCOTT, JRNL AUTH 2 S.KHALID,D.I.ROPER JRNL TITL THE ROLE OF THE JAW SUBDOMAIN OF PEPTIDOGLYCAN JRNL TITL 2 GLYCOSYLTRANSFERASES FOR LIPID II POLYMERIZATION. JRNL REF CELL SURF V. 2 54 2018 JRNL REFN ESSN 2468-2330 JRNL PMID 30046666 JRNL DOI 10.1016/J.TCSW.2018.06.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HEASLET,B.SHAW,A.MISTRY,A.A.MILLER REMARK 1 TITL CHARACTERIZATION OF THE ACTIVE SITE OF S. AUREUS REMARK 1 TITL 2 MONOFUNCTIONAL GLYCOSYLTRANSFERASE (MTG) BY SITE-DIRECTED REMARK 1 TITL 3 MUTATION AND STRUCTURAL ANALYSIS OF THE PROTEIN COMPLEXED REMARK 1 TITL 4 WITH MOENOMYCIN. REMARK 1 REF J STRUCT BIOL. V. 167 129 2009 REMARK 1 REFN ISSN 1047-8477 REMARK 1 PMID 19416756 REMARK 1 DOI 10.1016/J.JSB.2009.04.010 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2758 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2230 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2616 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.15 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 206 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91410 REMARK 3 B22 (A**2) : 0.91410 REMARK 3 B33 (A**2) : -1.82820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.193 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.168 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.184 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.165 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1979 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2676 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 754 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 63 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 290 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1979 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 266 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2648 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.11 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.19 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200007659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RIGAKU VARIMAX HF OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 23.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.0 REMARK 200 STARTING MODEL: 3HZS REMARK 200 REMARK 200 REMARK: HEXAGONAL PLATE CRYSTALS APPEARED WITHIN 1 WEEK. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SA MGT E100Q (10 MG/ML) WAS MIXED WITH REMARK 280 1MM MOENOMYCIN AND 1MM MNCL2 AND INCUBATED ON ICE FOR ~3 HOURS. REMARK 280 PRECIPITATED MATERIAL WAS REMOVED BY CENTRIFUGATION AT 16, 000XG REMARK 280 FOR 5 MINUTES. THE MOENOMYCIN COMPLEX WAS CRYSTALLIZED BY REMARK 280 HANGING DROP VAPOR DIFFUSION, MIXING THE PROTEIN 1:1 WITH A REMARK 280 RESERVOIR SOLUTION CONTAINING 0.1M NA ACETATE PH 4.6, 0.2M NACL, REMARK 280 30% MPD AT 295 K., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.21100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.03079 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.94800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.21100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.03079 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.94800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.21100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.03079 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.94800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.21100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.03079 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.94800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.21100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.03079 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.94800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.21100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.03079 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.94800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.06157 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 85.89600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 66.06157 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 85.89600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 66.06157 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 85.89600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 66.06157 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.89600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 66.06157 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 85.89600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 66.06157 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 85.89600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OBD M0E A 301 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 151 OCZ M0E A 303 3445 1.94 REMARK 500 C16 M0E A 301 C19 M0E A 301 2455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 81.00 -170.45 REMARK 500 ASN A 179 43.37 -152.08 REMARK 500 ALA A 225 69.49 -157.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 557 DISTANCE = 6.49 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 M0E A 302 REMARK 610 M0E A 303 REMARK 610 1QW A 314 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M0E A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M0E A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M0E A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1QW A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HZS RELATED DB: PDB REMARK 900 MGT MOENOMYCIN COMPLEX REMARK 900 RELATED ID: 2C6W RELATED DB: PDB REMARK 900 PBP1A APO STRUCTURE REMARK 900 RELATED ID: 2ZC5 RELATED DB: PDB REMARK 900 PBP1A BIAPENEM COMPLEX REMARK 900 RELATED ID: 2OLU RELATED DB: PDB REMARK 900 PBP2 APO STRUCTURE REMARK 900 RELATED ID: 3DWK RELATED DB: PDB REMARK 900 PBP2 APO STRUCTURE REMARK 900 RELATED ID: 2OLV RELATED DB: PDB REMARK 900 PBP2 MOENOMYCIN COMPLEX DBREF 6FTB A 68 268 UNP Q7A0I6 MGT_STAAW 68 268 SEQADV 6FTB GLU A 59 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB ASN A 60 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB LEU A 61 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB TYR A 62 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB PHE A 63 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB GLN A 64 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB GLY A 65 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB HIS A 66 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB MET A 67 UNP Q7A0I6 EXPRESSION TAG SEQADV 6FTB GLN A 100 UNP Q7A0I6 GLU 100 CONFLICT SEQRES 1 A 210 GLU ASN LEU TYR PHE GLN GLY HIS MET ASP ASN VAL ASP SEQRES 2 A 210 GLU LEU ARG LYS ILE GLU ASN LYS SER SER PHE VAL SER SEQRES 3 A 210 ALA ASP ASN MET PRO GLU TYR VAL LYS GLY ALA PHE ILE SEQRES 4 A 210 SER MET GLN ASP GLU ARG PHE TYR ASN HIS HIS GLY PHE SEQRES 5 A 210 ASP LEU LYS GLY THR THR ARG ALA LEU PHE SER THR ILE SEQRES 6 A 210 SER ASP ARG ASP VAL GLN GLY GLY SER THR ILE THR GLN SEQRES 7 A 210 GLN VAL VAL LYS ASN TYR PHE TYR ASP ASN ASP ARG SER SEQRES 8 A 210 PHE THR ARG LYS VAL LYS GLU LEU PHE VAL ALA HIS ARG SEQRES 9 A 210 VAL GLU LYS GLN TYR ASN LYS ASN GLU ILE LEU SER PHE SEQRES 10 A 210 TYR LEU ASN ASN ILE TYR PHE GLY ASP ASN GLN TYR THR SEQRES 11 A 210 LEU GLU GLY ALA ALA ASN HIS TYR PHE GLY THR THR VAL SEQRES 12 A 210 ASN LYS ASN SER THR THR MET SER HIS ILE THR VAL LEU SEQRES 13 A 210 GLN SER ALA ILE LEU ALA SER LYS VAL ASN ALA PRO SER SEQRES 14 A 210 VAL TYR ASN ILE ASN ASN MET SER GLU ASN PHE THR GLN SEQRES 15 A 210 ARG VAL SER THR ASN LEU GLU LYS MET LYS GLN GLN ASN SEQRES 16 A 210 TYR ILE ASN GLU THR GLN TYR GLN GLN ALA MET SER GLN SEQRES 17 A 210 LEU ASN HET M0E A 301 109 HET M0E A 302 21 HET M0E A 303 20 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET PO4 A 312 5 HET PO4 A 313 5 HET 1QW A 314 14 HETNAM M0E MOENOMYCIN HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM 1QW (2R)-2,3-DIHYDROXYPROPYL DODECANOATE HETSYN M0E MOENOMYCIN HETSYN EDO ETHYLENE GLYCOL HETSYN 1QW 1-LAUROYL-RAC-GLYCEROL FORMUL 2 M0E 3(C69 H106 N5 O34 P) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 13 PO4 2(O4 P 3-) FORMUL 15 1QW C15 H30 O4 FORMUL 16 HOH *157(H2 O) HELIX 1 AA1 ASN A 60 GLN A 64 5 5 HELIX 2 AA2 ASN A 69 LYS A 79 5 11 HELIX 3 AA3 SER A 84 MET A 88 5 5 HELIX 4 AA4 PRO A 89 ASP A 101 1 13 HELIX 5 AA5 ASP A 111 SER A 121 1 11 HELIX 6 AA6 THR A 133 PHE A 143 1 11 HELIX 7 AA7 SER A 149 TYR A 167 1 19 HELIX 8 AA8 ASN A 168 ASN A 178 1 11 HELIX 9 AA9 THR A 188 GLY A 198 1 11 HELIX 10 AB1 THR A 212 VAL A 223 1 12 HELIX 11 AB2 SER A 235 GLN A 252 1 18 HELIX 12 AB3 ASN A 256 ASN A 268 1 13 SITE 1 AC1 36 GLN A 100 SER A 132 GLN A 137 LYS A 140 SITE 2 AC1 36 ASN A 141 ASP A 145 ASP A 147 ARG A 148 SITE 3 AC1 36 SER A 149 PHE A 150 LYS A 153 TYR A 181 SITE 4 AC1 36 GLY A 183 ASP A 184 VAL A 223 ASN A 224 SITE 5 AC1 36 ALA A 225 PRO A 226 SER A 227 ASN A 237 SITE 6 AC1 36 M0E A 303 EDO A 305 EDO A 306 EDO A 307 SITE 7 AC1 36 1QW A 314 HOH A 401 HOH A 402 HOH A 405 SITE 8 AC1 36 HOH A 432 HOH A 445 HOH A 446 HOH A 459 SITE 9 AC1 36 HOH A 466 HOH A 478 HOH A 493 HOH A 505 SITE 1 AC2 6 HIS A 107 HIS A 108 GLY A 109 PHE A 110 SITE 2 AC2 6 ASP A 111 LEU A 112 SITE 1 AC3 13 PHE A 110 THR A 115 GLY A 130 GLY A 131 SITE 2 AC3 13 GLN A 136 SER A 149 PHE A 150 THR A 151 SITE 3 AC3 13 M0E A 301 PO4 A 313 HOH A 403 HOH A 485 SITE 4 AC3 13 HOH A 493 SITE 1 AC4 9 ASN A 60 GLN A 64 ASN A 141 ASN A 179 SITE 2 AC4 9 TYR A 181 TYR A 187 EDO A 305 EDO A 306 SITE 3 AC4 9 EDO A 308 SITE 1 AC5 7 ASN A 141 ILE A 180 TYR A 181 VAL A 223 SITE 2 AC5 7 PRO A 226 M0E A 301 EDO A 304 SITE 1 AC6 6 GLN A 64 ASP A 145 TYR A 187 M0E A 301 SITE 2 AC6 6 EDO A 304 HOH A 448 SITE 1 AC7 9 GLN A 100 GLY A 130 GLY A 131 SER A 132 SITE 2 AC7 9 GLN A 137 ASN A 224 M0E A 301 HOH A 408 SITE 3 AC7 9 HOH A 487 SITE 1 AC8 9 GLN A 64 LYS A 140 ASN A 141 PHE A 143 SITE 2 AC8 9 TYR A 144 ASP A 145 EDO A 304 EDO A 309 SITE 3 AC8 9 EDO A 310 SITE 1 AC9 7 LYS A 140 PHE A 143 TYR A 144 ARG A 152 SITE 2 AC9 7 GLU A 156 EDO A 308 EDO A 310 SITE 1 AD1 7 ASP A 145 ASN A 146 ARG A 148 EDO A 308 SITE 2 AD1 7 EDO A 309 HOH A 478 HOH A 508 SITE 1 AD2 5 ASN A 168 LYS A 169 HOH A 424 HOH A 488 SITE 2 AD2 5 HOH A 495 SITE 1 AD3 7 ASN A 194 HIS A 195 PHE A 197 GLY A 198 SITE 2 AD3 7 THR A 206 HIS A 210 HOH A 468 SITE 1 AD4 4 THR A 115 THR A 116 LEU A 119 M0E A 303 SITE 1 AD5 10 ASP A 184 TYR A 196 LYS A 222 PRO A 226 SITE 2 AD5 10 SER A 227 VAL A 228 TYR A 229 ASN A 230 SITE 3 AD5 10 ILE A 231 M0E A 301 CRYST1 114.422 114.422 128.844 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008740 0.005046 0.000000 0.00000 SCALE2 0.000000 0.010092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007761 0.00000