HEADER PROTEIN TRANSPORT 26-FEB-18 6FUE TITLE PERIPLASMIC COILED COIL DOMAIN OF THE FAPF AMYLOID TRANSPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAPF; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. UK4; SOURCE 4 ORGANISM_TAXID: 452680 KEYWDS TRIMERIC PERIPLASMIC COILED COIL, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.L.ROUSE,F.STYLIANOU,R.M.L.MORGAN,S.J.MATTHEWS REVDAT 3 08-MAY-24 6FUE 1 COMPND LINK REVDAT 2 10-OCT-18 6FUE 1 COMPND JRNL REVDAT 1 20-JUN-18 6FUE 0 JRNL AUTH S.L.ROUSE,F.STYLIANOU,H.Y.G.WU,J.L.BERRY,L.SEWELL, JRNL AUTH 2 R.M.L.MORGAN,A.C.SAUERWEIN,S.MATTHEWS JRNL TITL THE FAPF AMYLOID SECRETION TRANSPORTER POSSESSES AN ATYPICAL JRNL TITL 2 ASYMMETRIC COILED COIL. JRNL REF J. MOL. BIOL. V. 430 3863 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29886016 JRNL DOI 10.1016/J.JMB.2018.06.007 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 21454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1106 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1495 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : -0.38000 REMARK 3 B23 (A**2) : -0.40000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1879 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1908 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2539 ; 1.856 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4365 ; 1.091 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 5.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;41.281 ;26.505 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;15.877 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.475 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2131 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 387 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 913 ; 3.573 ; 3.397 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 912 ; 3.559 ; 3.394 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1137 ; 4.810 ; 5.042 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1138 ; 4.811 ; 5.046 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 4.799 ; 3.989 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 967 ; 4.796 ; 3.994 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1394 ; 7.336 ; 5.796 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7838 ;10.126 ;32.812 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7839 ;10.125 ;32.819 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22562 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 32.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 1.990 REMARK 200 R MERGE (I) : 0.03030 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE DIHYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE, PH 6.5, 10 % V/V 2-PROPANOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP D 1 REMARK 465 VAL D 2 REMARK 465 ASP E 1 REMARK 465 GLN E 38 REMARK 465 GLN F 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 1 CG OD1 OD2 REMARK 470 ARG A 17 NE CZ NH1 NH2 REMARK 470 LYS A 23 NZ REMARK 470 GLN A 30 CG CD OE1 NE2 REMARK 470 GLN A 34 CD OE1 NE2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 ASP B 1 CG OD1 OD2 REMARK 470 LYS B 15 NZ REMARK 470 ARG B 17 CZ NH1 NH2 REMARK 470 LYS B 23 NZ REMARK 470 GLN B 34 CG CD OE1 NE2 REMARK 470 GLN B 38 CG CD OE1 NE2 REMARK 470 ASP C 1 CG OD1 OD2 REMARK 470 ARG C 17 NE CZ NH1 NH2 REMARK 470 LYS C 23 CE NZ REMARK 470 GLU C 36 CG CD OE1 OE2 REMARK 470 ILE D 4 CG1 CG2 CD1 REMARK 470 LYS D 23 CE NZ REMARK 470 GLN D 34 OE1 NE2 REMARK 470 GLN D 38 CG CD OE1 NE2 REMARK 470 ILE E 4 CG1 CG2 CD1 REMARK 470 LYS E 15 NZ REMARK 470 ASP E 37 CG OD1 OD2 REMARK 470 ILE F 4 CG1 CG2 CD1 REMARK 470 GLU F 5 CG CD OE1 OE2 REMARK 470 ARG F 17 NE CZ NH1 NH2 REMARK 470 LYS F 23 CE NZ REMARK 470 GLU F 36 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASP A 37 O HOH A 203 1.53 REMARK 500 ZN ZN A 102 O HOH A 215 1.68 REMARK 500 O HOH B 231 O HOH B 238 1.81 REMARK 500 OE1 GLN E 21 O HOH E 201 1.86 REMARK 500 O HOH E 241 O HOH F 226 1.92 REMARK 500 O HOH F 238 O HOH F 241 2.04 REMARK 500 O HOH A 231 O HOH E 240 2.07 REMARK 500 CG ASP A 37 O HOH A 203 2.07 REMARK 500 NE2 GLN F 21 O HOH E 201 2.07 REMARK 500 O HOH A 239 O HOH E 236 2.17 REMARK 500 OE1 GLN D 21 O HOH E 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 3 ZN ZN F 104 1455 0.73 REMARK 500 OD2 ASP F 1 ZN ZN F 104 1556 1.69 REMARK 500 OD2 ASP B 3 OD2 ASP F 1 1454 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 18 CA - CB - CG ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 37 CB - CG - OD1 ANGL. DEV. = -9.0 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP B 3 CB - CG - OD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 ASP B 3 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 3 -69.99 -130.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 244 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH C 244 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C 245 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH E 252 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH E 253 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH F 244 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH F 245 DISTANCE = 8.73 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 3 OD2 REMARK 620 2 ASP D 37 OD1 90.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 10 OE2 REMARK 620 2 GLU A 13 OE1 110.4 REMARK 620 3 HOH A 223 O 111.4 107.3 REMARK 620 4 GLU D 29 OE2 91.3 119.1 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 29 OE2 REMARK 620 2 GLU D 10 OE2 51.2 REMARK 620 3 GLU D 13 OE1 52.8 5.2 REMARK 620 4 HOH D 219 O 122.6 72.2 71.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 10 OE2 REMARK 620 2 GLU B 13 OE1 112.4 REMARK 620 3 GLU F 29 OE2 56.1 101.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 26 O REMARK 620 2 GLN B 30 OE1 100.1 REMARK 620 3 HOH B 236 O 91.2 98.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 29 OE1 REMARK 620 2 GLU F 10 OE2 36.5 REMARK 620 3 GLU F 13 OE1 41.1 4.6 REMARK 620 4 HOH F 222 O 38.4 5.1 5.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 37 OD1 REMARK 620 2 HOH B 215 O 85.7 REMARK 620 3 ASP F 3 OD1 83.2 89.3 REMARK 620 4 ASP F 3 OD2 79.9 88.1 3.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 202 O REMARK 620 2 GLU F 13 OE1 30.8 REMARK 620 3 HOH F 222 O 110.7 109.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 10 OE2 REMARK 620 2 GLU C 13 OE1 111.3 REMARK 620 3 HOH C 218 O 62.4 52.6 REMARK 620 4 GLU E 29 OE2 60.6 52.6 5.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 29 OE2 REMARK 620 2 GLU E 10 OE2 90.6 REMARK 620 3 GLU E 13 OE1 117.0 111.4 REMARK 620 4 HOH E 225 O 114.7 110.6 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 10 O REMARK 620 2 GLU D 10 OE1 98.6 REMARK 620 3 HOH D 232 O 129.2 125.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 13 OE1 REMARK 620 2 HOH D 202 O 160.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 1 OD1 REMARK 620 2 ASP F 37 OD2 27.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 104 DBREF 6FUE A 1 38 UNP C4IN73 C4IN73_9PSED 27 64 DBREF 6FUE B 1 38 UNP C4IN73 C4IN73_9PSED 27 64 DBREF 6FUE C 1 38 UNP C4IN73 C4IN73_9PSED 27 64 DBREF 6FUE D 1 38 UNP C4IN73 C4IN73_9PSED 27 64 DBREF 6FUE E 1 38 UNP C4IN73 C4IN73_9PSED 27 64 DBREF 6FUE F 1 38 UNP C4IN73 C4IN73_9PSED 27 64 SEQRES 1 A 38 ASP VAL ASP ILE GLU THR LEU LYS GLN GLU LEU LEU GLU SEQRES 2 A 38 LEU LYS GLN ARG TYR GLU ALA GLN GLN LYS ALA LEU ALA SEQRES 3 A 38 VAL LEU GLU GLN ARG VAL ARG GLN VAL GLU ASP GLN SEQRES 1 B 38 ASP VAL ASP ILE GLU THR LEU LYS GLN GLU LEU LEU GLU SEQRES 2 B 38 LEU LYS GLN ARG TYR GLU ALA GLN GLN LYS ALA LEU ALA SEQRES 3 B 38 VAL LEU GLU GLN ARG VAL ARG GLN VAL GLU ASP GLN SEQRES 1 C 38 ASP VAL ASP ILE GLU THR LEU LYS GLN GLU LEU LEU GLU SEQRES 2 C 38 LEU LYS GLN ARG TYR GLU ALA GLN GLN LYS ALA LEU ALA SEQRES 3 C 38 VAL LEU GLU GLN ARG VAL ARG GLN VAL GLU ASP GLN SEQRES 1 D 38 ASP VAL ASP ILE GLU THR LEU LYS GLN GLU LEU LEU GLU SEQRES 2 D 38 LEU LYS GLN ARG TYR GLU ALA GLN GLN LYS ALA LEU ALA SEQRES 3 D 38 VAL LEU GLU GLN ARG VAL ARG GLN VAL GLU ASP GLN SEQRES 1 E 38 ASP VAL ASP ILE GLU THR LEU LYS GLN GLU LEU LEU GLU SEQRES 2 E 38 LEU LYS GLN ARG TYR GLU ALA GLN GLN LYS ALA LEU ALA SEQRES 3 E 38 VAL LEU GLU GLN ARG VAL ARG GLN VAL GLU ASP GLN SEQRES 1 F 38 ASP VAL ASP ILE GLU THR LEU LYS GLN GLU LEU LEU GLU SEQRES 2 F 38 LEU LYS GLN ARG TYR GLU ALA GLN GLN LYS ALA LEU ALA SEQRES 3 F 38 VAL LEU GLU GLN ARG VAL ARG GLN VAL GLU ASP GLN HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET NA A 104 1 HET ZN B 101 1 HET NA B 102 1 HET NA B 103 1 HET NA B 104 1 HET NA B 105 1 HET IPA C 101 4 HET ZN D 101 1 HET NA D 102 1 HET ZN E 101 1 HET ZN E 102 1 HET ZN F 101 1 HET ZN F 102 1 HET ZN F 103 1 HET ZN F 104 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 7 ZN 11(ZN 2+) FORMUL 10 NA 6(NA 1+) FORMUL 16 IPA C3 H8 O FORMUL 25 HOH *273(H2 O) HELIX 1 AA1 ASP A 3 ASP A 37 1 35 HELIX 2 AA2 ASP B 3 ASP B 37 1 35 HELIX 3 AA3 ASP C 3 ASP C 37 1 35 HELIX 4 AA4 ILE D 4 GLN D 38 1 35 HELIX 5 AA5 ASP E 3 ASP E 37 1 35 HELIX 6 AA6 ASP F 3 ASP F 37 1 35 LINK OD2 ASP A 3 ZN ZN A 102 1555 1555 1.95 LINK OE2 GLU A 10 ZN ZN A 101 1555 1555 1.98 LINK OE1 GLU A 13 ZN ZN A 101 1555 1555 2.05 LINK OE2 GLU A 29 ZN ZN A 103 1555 1555 1.97 LINK ZN ZN A 101 O HOH A 223 1555 1555 1.83 LINK ZN ZN A 101 OE2 GLU D 29 1555 1555 1.83 LINK ZN ZN A 102 OD1 ASP D 37 1555 1555 2.11 LINK ZN ZN A 103 OE2 GLU D 10 1655 1555 2.02 LINK ZN ZN A 103 OE1 GLU D 13 1655 1555 2.01 LINK ZN ZN A 103 O HOH D 219 1555 1455 1.97 LINK OE2 GLU B 10 ZN ZN F 102 1555 1455 1.99 LINK OE1 GLU B 13 ZN ZN F 102 1555 1455 1.99 LINK O ALA B 26 NA NA B 104 1555 1555 3.02 LINK OE1 GLU B 29 ZN ZN F 101 1555 1565 1.95 LINK OE1 GLN B 30 NA NA B 104 1555 1555 3.09 LINK OD1 ASP B 37 NA NA B 102 1555 1555 2.00 LINK ZN ZN B 101 O HOH B 212 1555 1555 2.12 LINK NA NA B 102 O HOH B 215 1555 1555 2.25 LINK NA NA B 102 OD1 ASP F 3 1545 1555 2.69 LINK NA NA B 102 OD2 ASP F 3 1545 1555 2.12 LINK NA NA B 103 O HOH F 222 1555 1565 3.11 LINK NA NA B 104 O HOH B 236 1555 1555 2.81 LINK NA NA B 105 O HOH B 202 1555 1555 2.37 LINK NA NA B 105 OE1 GLU F 13 1545 1555 3.11 LINK NA NA B 105 O HOH F 222 1555 1565 2.25 LINK OE2 GLU C 10 ZN ZN E 101 1555 1565 2.06 LINK OE1 GLU C 13 ZN ZN E 101 1555 1565 2.02 LINK OE2 GLU C 29 ZN ZN E 102 1555 1555 2.03 LINK O HOH C 218 ZN ZN E 101 1545 1555 1.79 LINK O GLU D 10 NA NA D 102 1555 1555 2.84 LINK OE1 GLU D 10 NA NA D 102 1555 1555 2.92 LINK OE1 GLU D 13 ZN ZN D 101 1555 1555 2.22 LINK ZN ZN D 101 O HOH D 202 1555 1555 2.19 LINK NA NA D 102 O HOH D 232 1555 1555 2.65 LINK OE2 GLU E 10 ZN ZN E 102 1555 1555 1.95 LINK OE1 GLU E 13 ZN ZN E 102 1555 1555 2.01 LINK OE2 GLU E 29 ZN ZN E 101 1555 1555 2.03 LINK ZN ZN E 102 O HOH E 225 1555 1555 1.98 LINK OD1 ASP F 1 ZN ZN F 104 1555 1556 2.45 LINK OE2 GLU F 10 ZN ZN F 101 1555 1555 1.98 LINK OE1 GLU F 13 ZN ZN F 101 1555 1555 1.99 LINK OE2 GLU F 29 ZN ZN F 102 1555 1555 1.97 LINK OD2 ASP F 37 ZN ZN F 104 1555 1555 2.22 LINK ZN ZN F 101 O HOH F 222 1555 1555 2.18 SITE 1 AC1 4 GLU A 10 GLU A 13 HOH A 223 GLU D 29 SITE 1 AC2 3 ASP A 3 HOH A 215 ASP D 37 SITE 1 AC3 5 GLU A 29 GLU D 10 GLU D 13 ZN D 101 SITE 2 AC3 5 HOH D 219 SITE 1 AC4 7 HOH A 226 GLU B 10 GLU B 13 HOH B 212 SITE 2 AC4 7 GLU F 29 ZN F 102 HOH F 220 SITE 1 AC5 3 ASP B 37 HOH B 215 ASP F 3 SITE 1 AC6 1 NA B 105 SITE 1 AC7 4 ALA B 26 GLU B 29 GLN B 30 HOH B 236 SITE 1 AC8 6 GLU B 29 NA B 103 HOH B 202 GLU F 13 SITE 2 AC8 6 ZN F 101 HOH F 222 SITE 1 AC9 3 ASP C 37 HOH C 205 GLN E 34 SITE 1 AD1 3 ZN A 103 GLU D 13 HOH D 202 SITE 1 AD2 5 GLU D 10 GLU D 13 LEU D 14 HOH D 232 SITE 2 AD2 5 LYS F 15 SITE 1 AD3 4 GLU C 10 GLU C 13 HOH C 218 GLU E 29 SITE 1 AD4 5 GLU C 29 GLU E 10 GLU E 13 HOH E 221 SITE 2 AD4 5 HOH E 225 SITE 1 AD5 5 GLU B 29 NA B 105 GLU F 10 GLU F 13 SITE 2 AD5 5 HOH F 222 SITE 1 AD6 5 GLU B 10 GLU B 13 ZN B 101 HOH B 212 SITE 2 AD6 5 GLU F 29 SITE 1 AD7 2 GLN F 16 HOH F 236 SITE 1 AD8 3 ASP B 3 ASP F 1 ASP F 37 CRYST1 37.590 37.700 57.340 90.24 108.95 119.89 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026603 0.015291 0.012489 0.00000 SCALE2 0.000000 0.030595 0.006325 0.00000 SCALE3 0.000000 0.000000 0.018829 0.00000