HEADER IMMUNE SYSTEM 27-FEB-18 6FUM TITLE F11 T-CELL RECEPTOR RECOGNISING PKYVKQNTLKLAT PEPTIDE PRESENTED BY TITLE 2 HLA-DR*0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN F11 T-CELL RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN F11 T-CELL RECEPTOR BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T CELL RECEPTOR, HUMAN LEUKOCYTE ANTIGEN, INFLUENZA EPITOPE, KEYWDS 2 HAEMAGGLUTININ, 3D STRUCTURE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 3 17-JAN-24 6FUM 1 REMARK REVDAT 2 09-MAY-18 6FUM 1 COMPND JRNL HETNAM REVDAT 1 18-APR-18 6FUM 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2530 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3493 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3694 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3280 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5027 ; 1.880 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7653 ; 1.053 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 7.612 ; 5.021 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;37.138 ;24.432 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;14.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4137 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 767 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1801 ; 1.140 ; 1.746 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1800 ; 1.139 ; 1.744 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2258 ; 1.868 ; 2.610 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2259 ; 1.868 ; 2.612 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1889 ; 1.474 ; 1.957 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1890 ; 1.474 ; 1.958 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2759 ; 2.322 ; 2.852 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3983 ; 6.293 ;21.655 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3984 ; 6.294 ;21.666 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -25.0820 5.2812 -21.8513 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0672 REMARK 3 T33: 0.0780 T12: 0.0561 REMARK 3 T13: -0.0256 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 6.1729 L22: 1.1781 REMARK 3 L33: 1.2220 L12: 0.0215 REMARK 3 L13: -1.0031 L23: 0.2967 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: 0.1540 S13: -0.0950 REMARK 3 S21: -0.0600 S22: -0.0845 S23: 0.1808 REMARK 3 S31: -0.1130 S32: -0.1290 S33: -0.0271 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9661 11.7021 -15.4223 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0447 REMARK 3 T33: 0.0821 T12: 0.0027 REMARK 3 T13: 0.0190 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.6039 L22: 4.6635 REMARK 3 L33: 4.0180 L12: -1.4344 REMARK 3 L13: -0.3734 L23: 0.9345 REMARK 3 S TENSOR REMARK 3 S11: -0.1200 S12: -0.2078 S13: -0.1356 REMARK 3 S21: 0.2611 S22: 0.2089 S23: -0.1489 REMARK 3 S31: -0.0089 S32: 0.3137 S33: -0.0889 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -30.1074 15.9490 -0.7698 REMARK 3 T TENSOR REMARK 3 T11: 0.0608 T22: 0.0391 REMARK 3 T33: 0.0769 T12: 0.0283 REMARK 3 T13: 0.0293 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.5428 L22: 0.9248 REMARK 3 L33: 2.1487 L12: -0.3178 REMARK 3 L13: 1.8168 L23: -0.2734 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: -0.0022 S13: -0.0363 REMARK 3 S21: 0.1245 S22: -0.0622 S23: 0.1705 REMARK 3 S31: -0.1002 S32: -0.0838 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3501 24.2112 -7.3717 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.0041 REMARK 3 T33: 0.0465 T12: 0.0089 REMARK 3 T13: -0.0213 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.5266 L22: 1.6369 REMARK 3 L33: 6.5096 L12: -0.2857 REMARK 3 L13: -2.1045 L23: 1.0632 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: -0.0526 S13: -0.0206 REMARK 3 S21: -0.2716 S22: -0.0316 S23: 0.0021 REMARK 3 S31: -0.5622 S32: 0.0466 S33: -0.0630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49905 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 46.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EH6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA/K PO4, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.80500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 434 O HOH A 434 2455 0.52 REMARK 500 OD1 ASN A 145 OD1 ASN A 145 2555 1.87 REMARK 500 OE1 GLN A 96 OE1 GLN A 96 2455 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 185 CB SER B 185 OG -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 2 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG B 106 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 41 9.85 80.63 REMARK 500 ALA A 53 -116.03 -116.55 REMARK 500 THR A 72 54.36 31.89 REMARK 500 PHE A 74 65.29 -154.66 REMARK 500 ASP A 97 17.93 55.04 REMARK 500 ASP A 118 57.01 -146.58 REMARK 500 ASP A 131 59.07 -98.99 REMARK 500 ASP B 50 -175.41 -178.51 REMARK 500 ASP B 94 -168.45 -79.56 REMARK 500 HIS B 150 70.05 -157.02 REMARK 500 ASN B 158 45.48 39.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 1 ASP B 2 149.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P4G A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF 6FUM A 1 202 PDB 6FUM 6FUM 1 202 DBREF 6FUM B 1 240 PDB 6FUM 6FUM 1 240 SEQRES 1 A 202 ALA GLN SER VAL THR GLN LEU GLY SER HIS VAL SER VAL SEQRES 2 A 202 SER GLU GLY ALA LEU VAL LEU LEU ARG CYS ASN TYR SER SEQRES 3 A 202 SER SER VAL PRO PRO TYR LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 202 PRO ASN GLN GLY LEU GLN LEU LEU LEU LYS TYR THR SER SEQRES 5 A 202 ALA ALA THR LEU VAL LYS GLY ILE ASN GLY PHE GLU ALA SEQRES 6 A 202 GLU PHE LYS LYS SER GLU THR SER PHE HIS LEU THR LYS SEQRES 7 A 202 PRO SER ALA HIS MET SER ASP ALA ALA GLU TYR PHE CYS SEQRES 8 A 202 ALA VAL SER GLU GLN ASP ASP LYS ILE ILE PHE GLY LYS SEQRES 9 A 202 GLY THR ARG LEU HIS ILE LEU PRO ASN ILE GLN ASN PRO SEQRES 10 A 202 ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER SEQRES 11 A 202 ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN SEQRES 12 A 202 THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE SEQRES 13 A 202 THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE SEQRES 14 A 202 LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP SEQRES 15 A 202 PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO SEQRES 16 A 202 GLU ASP THR PHE PHE PRO SER SEQRES 1 B 240 ALA ASP VAL THR GLN THR PRO ARG ASN ARG ILE THR LYS SEQRES 2 B 240 THR GLY LYS ARG ILE MET LEU GLU CYS SER GLN THR LYS SEQRES 3 B 240 GLY HIS ASP ARG MET TYR TRP TYR ARG GLN ASP PRO GLY SEQRES 4 B 240 LEU GLY LEU ARG LEU ILE TYR TYR SER PHE ASP VAL LYS SEQRES 5 B 240 ASP ILE ASN LYS GLY GLU ILE SER ASP GLY TYR SER VAL SEQRES 6 B 240 SER ARG GLN ALA GLN ALA LYS PHE SER LEU SER LEU GLU SEQRES 7 B 240 SER ALA ILE PRO ASN GLN THR ALA LEU TYR PHE CYS ALA SEQRES 8 B 240 THR SER ASP GLU SER TYR GLY TYR THR PHE GLY SER GLY SEQRES 9 B 240 THR ARG LEU THR VAL VAL GLU ASP LEU ASN LYS VAL SER SEQRES 10 B 240 PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU SEQRES 11 B 240 ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA SEQRES 12 B 240 THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP SEQRES 13 B 240 VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP SEQRES 14 B 240 PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER SEQRES 15 B 240 ARG TYR SER LEU SER SER ARG LEU ARG VAL SER ALA THR SEQRES 16 B 240 PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL SEQRES 17 B 240 GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN SEQRES 18 B 240 ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU SEQRES 19 B 240 ALA TRP GLY ARG ALA ASP HET EDO A 301 4 HET EDO A 302 4 HET P4G A 303 11 HET EDO B 301 4 HET EDO B 302 4 HET SO4 B 303 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM P4G 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 5 P4G C8 H18 O3 FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *346(H2 O) HELIX 1 AA1 ILE A 60 GLY A 62 5 3 HELIX 2 AA2 LYS A 69 THR A 72 5 4 HELIX 3 AA3 HIS A 82 ALA A 86 5 5 HELIX 4 AA4 ARG A 165 ASP A 168 5 4 HELIX 5 AA5 ALA A 184 PHE A 189 1 6 HELIX 6 AA6 ILE B 81 THR B 85 5 5 HELIX 7 AA7 ASP B 112 VAL B 116 5 5 HELIX 8 AA8 SER B 127 GLN B 135 1 9 HELIX 9 AA9 ALA B 194 GLN B 198 1 5 SHEET 1 AA1 2 SER A 3 THR A 5 0 SHEET 2 AA1 2 ASN A 24 SER A 26 -1 O ASN A 24 N THR A 5 SHEET 1 AA2 5 HIS A 10 SER A 14 0 SHEET 2 AA2 5 THR A 106 LEU A 111 1 O HIS A 109 N VAL A 11 SHEET 3 AA2 5 ALA A 87 GLU A 95 -1 N TYR A 89 O THR A 106 SHEET 4 AA2 5 LEU A 33 GLN A 38 -1 N TYR A 36 O PHE A 90 SHEET 5 AA2 5 GLN A 45 TYR A 50 -1 O LEU A 47 N TRP A 35 SHEET 1 AA3 4 HIS A 10 SER A 14 0 SHEET 2 AA3 4 THR A 106 LEU A 111 1 O HIS A 109 N VAL A 11 SHEET 3 AA3 4 ALA A 87 GLU A 95 -1 N TYR A 89 O THR A 106 SHEET 4 AA3 4 LYS A 99 PHE A 102 -1 O ILE A 101 N VAL A 93 SHEET 1 AA4 4 VAL A 19 LEU A 21 0 SHEET 2 AA4 4 SER A 73 LYS A 78 -1 O LEU A 76 N LEU A 21 SHEET 3 AA4 4 GLU A 64 LYS A 68 -1 N GLU A 64 O THR A 77 SHEET 4 AA4 4 LEU A 56 LYS A 58 -1 N VAL A 57 O ALA A 65 SHEET 1 AA5 8 VAL A 154 ILE A 156 0 SHEET 2 AA5 8 PHE A 169 SER A 178 -1 O TRP A 177 N TYR A 155 SHEET 3 AA5 8 SER A 133 THR A 138 -1 N CYS A 135 O ALA A 176 SHEET 4 AA5 8 ALA A 120 ASP A 126 -1 N ALA A 120 O THR A 138 SHEET 5 AA5 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 125 SHEET 6 AA5 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 AA5 8 TYR B 184 SER B 193 -1 O LEU B 190 N LEU B 139 SHEET 8 AA5 8 VAL B 166 THR B 168 -1 N CYS B 167 O ARG B 189 SHEET 1 AA6 8 CYS A 160 MET A 164 0 SHEET 2 AA6 8 PHE A 169 SER A 178 -1 O PHE A 169 N MET A 164 SHEET 3 AA6 8 SER A 133 THR A 138 -1 N CYS A 135 O ALA A 176 SHEET 4 AA6 8 ALA A 120 ASP A 126 -1 N ALA A 120 O THR A 138 SHEET 5 AA6 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 125 SHEET 6 AA6 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 AA6 8 TYR B 184 SER B 193 -1 O LEU B 190 N LEU B 139 SHEET 8 AA6 8 LEU B 173 LYS B 174 -1 N LEU B 173 O SER B 185 SHEET 1 AA7 4 THR B 4 THR B 6 0 SHEET 2 AA7 4 ILE B 18 SER B 23 -1 O GLU B 21 N THR B 6 SHEET 3 AA7 4 LYS B 72 LEU B 77 -1 O LEU B 75 N LEU B 20 SHEET 4 AA7 4 TYR B 63 ALA B 69 -1 N SER B 64 O SER B 76 SHEET 1 AA8 6 ASN B 9 LYS B 13 0 SHEET 2 AA8 6 THR B 105 VAL B 110 1 O VAL B 110 N THR B 12 SHEET 3 AA8 6 ALA B 86 SER B 93 -1 N TYR B 88 O THR B 105 SHEET 4 AA8 6 ARG B 30 ASP B 37 -1 N GLN B 36 O LEU B 87 SHEET 5 AA8 6 GLY B 41 ASP B 50 -1 O ILE B 45 N TRP B 33 SHEET 6 AA8 6 ASP B 53 LYS B 56 -1 O ASN B 55 N TYR B 47 SHEET 1 AA9 4 ASN B 9 LYS B 13 0 SHEET 2 AA9 4 THR B 105 VAL B 110 1 O VAL B 110 N THR B 12 SHEET 3 AA9 4 ALA B 86 SER B 93 -1 N TYR B 88 O THR B 105 SHEET 4 AA9 4 TYR B 99 PHE B 101 -1 O THR B 100 N THR B 92 SHEET 1 AB1 4 LYS B 160 VAL B 162 0 SHEET 2 AB1 4 VAL B 151 VAL B 157 -1 N TRP B 155 O VAL B 162 SHEET 3 AB1 4 HIS B 203 PHE B 210 -1 O GLN B 207 N SER B 154 SHEET 4 AB1 4 GLN B 229 TRP B 236 -1 O GLN B 229 N PHE B 210 SSBOND 1 CYS A 23 CYS A 91 1555 1555 2.05 SSBOND 2 CYS A 135 CYS A 185 1555 1555 2.10 SSBOND 3 CYS A 160 CYS B 167 1555 1555 2.02 SSBOND 4 CYS B 22 CYS B 90 1555 1555 2.11 SSBOND 5 CYS B 141 CYS B 206 1555 1555 1.96 CISPEP 1 THR B 6 PRO B 7 0 -5.73 CISPEP 2 TYR B 147 PRO B 148 0 -4.87 SITE 1 AC1 5 LYS A 132 SER A 133 HOH A 406 HOH A 488 SITE 2 AC1 5 PHE B 124 SITE 1 AC2 7 ARG A 165 SER A 166 HOH A 525 SER B 164 SITE 2 AC2 7 ARG B 191 VAL B 192 HOH B 450 SITE 1 AC3 11 ARG A 107 LEU A 108 HIS A 109 LYS A 159 SITE 2 AC3 11 ILE A 193 HOH A 409 HOH A 467 HOH A 480 SITE 3 AC3 11 HOH A 508 HOH A 523 HOH A 551 SITE 1 AC4 7 THR A 157 ASP A 158 ASP B 169 GLN B 171 SITE 2 AC4 7 PRO B 172 LEU B 173 HOH B 465 SITE 1 AC5 4 ASN B 114 GLU B 218 TRP B 219 THR B 220 SITE 1 AC6 5 THR B 85 ALA B 86 ARG B 106 LEU B 107 SITE 2 AC6 5 HOH B 411 CRYST1 85.610 114.180 50.630 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019751 0.00000