HEADER ISOMERASE 09-MAR-18 6FXS TITLE STRUCTURE OF TRYPANOSOMA BRUCEI TYPE B RIBOSE 5-PHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE 5-PHOSPHATE ISOMERASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RIBOSE 5-PHOSPHATE ISOMERASE, PUTATIVE; COMPND 8 CHAIN: B; COMPND 9 EC: 5.3.1.6; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI (STRAIN 927/4 SOURCE 3 GUTAT10.1); SOURCE 4 ORGANISM_TAXID: 185431; SOURCE 5 STRAIN: 927/4 GUTAT10.1; SOURCE 6 GENE: TB11.01.0700; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI (STRAIN 927/4 SOURCE 11 GUTAT10.1); SOURCE 12 ORGANISM_TAXID: 185431; SOURCE 13 STRAIN: 927/4 GUTAT10.1; SOURCE 14 GENE: TB11.01.0700; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PENTOSE PHOSPHATE PATHWAY TYPE B RIBOSE 5-PHOSPHATE ISOMERASE R5P, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.RONIN,F.CIESIELSKI,P.CIAPETTI REVDAT 3 17-JAN-24 6FXS 1 REMARK REVDAT 2 12-JUN-19 6FXS 1 AUTHOR JRNL REVDAT 1 22-MAY-19 6FXS 0 JRNL AUTH C.RONIN,F.CIESIELSKI,P.CIAPETTI JRNL TITL STRUCTURE OF TRYPANOSOMA BRUCEI TYPE B RIBOSE 5-PHOSPHATE JRNL TITL 2 ISOMERASE (TBRPIB) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.4620 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.4720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.901 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2358 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2209 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3195 ; 2.102 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5089 ; 1.125 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 5.638 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.429 ;22.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;13.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;23.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2637 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1192 ; 2.147 ; 2.095 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1191 ; 2.142 ; 2.091 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1487 ; 2.936 ; 3.119 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1488 ; 2.939 ; 3.123 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 3.918 ; 2.629 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1154 ; 3.915 ; 2.609 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1689 ; 5.834 ; 3.721 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2629 ; 6.809 ;26.350 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2601 ; 6.792 ;26.171 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.912 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27783 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 19.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 22.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.62700 REMARK 200 FOR SHELL : 4.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH7.5; 1.26M NH4SO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.09000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.04500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.13500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.09000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.13500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.04500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -97.80000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 SER A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 LEU A -3 REMARK 465 VAL A -2 REMARK 465 PRO A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 SER A 153 REMARK 465 ASN A 154 REMARK 465 THR A 155 REMARK 465 ASN A 156 REMARK 465 GLY A 157 REMARK 465 CYS A 158 REMARK 465 MET B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 LEU B -3 REMARK 465 VAL B -2 REMARK 465 PRO B -1 REMARK 465 ARG B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 465 ASN B 154 REMARK 465 THR B 155 REMARK 465 ASN B 156 REMARK 465 GLY B 157 REMARK 465 CYS B 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 354 O HOH A 365 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 29 CD GLU A 29 OE1 -0.073 REMARK 500 GLU B 125 CD GLU B 125 OE2 -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP A 66 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 107 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 CYS B 72 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 116 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -164.42 -115.25 REMARK 500 ASP B 13 -165.93 -115.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 DBREF 6FXS A 4 158 UNP Q384D1 Q384D1_TRYB2 1 155 DBREF 6FXS B 4 158 UNP Q384D1 Q384D1_TRYB2 1 155 SEQADV 6FXS MET A -16 UNP Q384D1 INITIATING METHIONINE SEQADV 6FXS GLY A -15 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER A -14 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER A -13 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS A -12 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS A -11 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS A -10 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS A -9 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS A -8 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS A -7 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER A -6 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER A -5 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS GLY A -4 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS LEU A -3 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS VAL A -2 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS PRO A -1 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS ARG A 0 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS GLY A 1 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER A 2 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS A 3 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS MET B -16 UNP Q384D1 INITIATING METHIONINE SEQADV 6FXS GLY B -15 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER B -14 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER B -13 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS B -12 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS B -11 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS B -10 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS B -9 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS B -8 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS B -7 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER B -6 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER B -5 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS GLY B -4 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS LEU B -3 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS VAL B -2 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS PRO B -1 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS ARG B 0 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS GLY B 1 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS SER B 2 UNP Q384D1 EXPRESSION TAG SEQADV 6FXS HIS B 3 UNP Q384D1 EXPRESSION TAG SEQRES 1 A 175 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 175 LEU VAL PRO ARG GLY SER HIS MET THR ARG LYS VAL ALA SEQRES 3 A 175 ILE GLY ALA ASP HIS ILE GLY PHE PRO ILE HIS GLU SER SEQRES 4 A 175 ILE VAL ARG TYR VAL ARG GLU ALA GLY GLU GLU PHE GLU SEQRES 5 A 175 PRO VAL TYR ILE GLY PRO HIS SER LEU GLU ARG VAL ASP SEQRES 6 A 175 TYR PRO ASP TYR ALA LEU ASN VAL ALA ARG MET VAL ALA SEQRES 7 A 175 ARG GLY GLU ALA ASP VAL GLY ILE LEU VAL CSD GLY SER SEQRES 8 A 175 GLY ILE GLY MET SER ILE ALA ALA ASN LYS VAL PRO GLY SEQRES 9 A 175 ILE ARG ALA ALA LEU CYS PHE ASP HIS TYR THR ALA VAL SEQRES 10 A 175 MET ALA ARG GLN HIS ASN ASP ALA ASN VAL VAL CYS LEU SEQRES 11 A 175 GLY GLU ARG THR THR GLY PRO ALA VAL LEU ARG GLU ILE SEQRES 12 A 175 ILE MET THR PHE LEU GLN THR PRO TYR SER GLY GLU ASP SEQRES 13 A 175 ARG HIS THR GLN ARG LEU GLU LYS ILE LYS ALA ALA GLU SEQRES 14 A 175 SER ASN THR ASN GLY CYS SEQRES 1 B 175 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 175 LEU VAL PRO ARG GLY SER HIS MET THR ARG LYS VAL ALA SEQRES 3 B 175 ILE GLY ALA ASP HIS ILE GLY PHE PRO ILE HIS GLU SER SEQRES 4 B 175 ILE VAL ARG TYR VAL ARG GLU ALA GLY GLU GLU PHE GLU SEQRES 5 B 175 PRO VAL TYR ILE GLY PRO HIS SER LEU GLU ARG VAL ASP SEQRES 6 B 175 TYR PRO ASP TYR ALA LEU ASN VAL ALA ARG MET VAL ALA SEQRES 7 B 175 ARG GLY GLU ALA ASP VAL GLY ILE LEU VAL CYS GLY SER SEQRES 8 B 175 GLY ILE GLY MET SER ILE ALA ALA ASN LYS VAL PRO GLY SEQRES 9 B 175 ILE ARG ALA ALA LEU CYS PHE ASP HIS TYR THR ALA VAL SEQRES 10 B 175 MET ALA ARG GLN HIS ASN ASP ALA ASN VAL VAL CYS LEU SEQRES 11 B 175 GLY GLU ARG THR THR GLY PRO ALA VAL LEU ARG GLU ILE SEQRES 12 B 175 ILE MET THR PHE LEU GLN THR PRO TYR SER GLY GLU ASP SEQRES 13 B 175 ARG HIS THR GLN ARG LEU GLU LYS ILE LYS ALA ALA GLU SEQRES 14 B 175 SER ASN THR ASN GLY CYS MODRES 6FXS CSD A 72 CYS MODIFIED RESIDUE HET CSD A 72 8 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 B 201 5 HETNAM CSD 3-SULFINOALANINE HETNAM SO4 SULFATE ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *143(H2 O) HELIX 1 AA1 GLY A 16 PRO A 18 5 3 HELIX 2 AA2 ILE A 19 GLU A 29 1 11 HELIX 3 AA3 ASP A 48 ARG A 62 1 15 HELIX 4 AA4 GLY A 75 ASN A 83 1 9 HELIX 5 AA5 ASP A 95 HIS A 105 1 11 HELIX 6 AA6 GLY A 119 THR A 133 1 15 HELIX 7 AA7 GLU A 138 GLU A 152 1 15 HELIX 8 AA8 GLY B 16 PRO B 18 5 3 HELIX 9 AA9 ILE B 19 ALA B 30 1 12 HELIX 10 AB1 ASP B 48 ARG B 62 1 15 HELIX 11 AB2 GLY B 75 LYS B 84 1 10 HELIX 12 AB3 ASP B 95 HIS B 105 1 11 HELIX 13 AB4 GLY B 119 THR B 133 1 15 HELIX 14 AB5 GLU B 138 SER B 153 1 16 SHEET 1 AA1 5 PHE A 34 TYR A 38 0 SHEET 2 AA1 5 ARG A 6 ALA A 12 1 N ILE A 10 O VAL A 37 SHEET 3 AA1 5 VAL A 67 CSD A 72 1 O ILE A 69 N ALA A 9 SHEET 4 AA1 5 VAL A 110 GLY A 114 1 O LEU A 113 N LEU A 70 SHEET 5 AA1 5 ALA A 90 LEU A 92 1 N ALA A 91 O VAL A 110 SHEET 1 AA2 5 PHE B 34 TYR B 38 0 SHEET 2 AA2 5 ARG B 6 ALA B 12 1 N VAL B 8 O VAL B 37 SHEET 3 AA2 5 VAL B 67 CYS B 72 1 O ILE B 69 N GLY B 11 SHEET 4 AA2 5 VAL B 110 GLY B 114 1 O LEU B 113 N LEU B 70 SHEET 5 AA2 5 ALA B 90 LEU B 92 1 N ALA B 91 O CYS B 112 LINK C VAL A 71 N CSD A 72 1555 1555 1.35 LINK C CSD A 72 N GLY A 73 1555 1555 1.32 CISPEP 1 GLY A 40 PRO A 41 0 5.26 CISPEP 2 GLY B 40 PRO B 41 0 0.51 SITE 1 AC1 5 HIS A 14 ARG A 46 ARG B 140 HIS B 141 SITE 2 AC1 5 ARG B 144 SITE 1 AC2 4 ARG A 25 TYR A 26 ARG A 116 ARG A 124 SITE 1 AC3 4 ARG A 140 ARG A 144 HIS B 14 ARG B 46 CRYST1 97.800 97.800 84.180 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011879 0.00000